View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20760_low_19 (Length: 302)
Name: NF20760_low_19
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20760_low_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 32640345 - 32640632
Alignment:
| Q |
1 |
cataaaagtgtatgatactgattatgtgacaaattggtaatcaaaagaattatgattacatcttttttaaaagctggttagtatagctcatttttattta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32640345 |
cataaaagtgtatgatactgattatgtgacaaattggtaatcaaaagaattatgattacatcttttttaaaagctggttagtatagctcatttttagtta |
32640444 |
T |
|
| Q |
101 |
gtttgtctaaaaccagttaaacatagaagaaacattcacttctcactgtattatcgttagttaaaaatcacaagtgtgcccgaaatcgattagtttgtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32640445 |
gtttgtctaaaaccagttaaacatagaagaaacattcacttctcactgtattatcgttagttaaaaatcacaagtgtgcccgaaatcgattagtttgtct |
32640544 |
T |
|
| Q |
201 |
ttggttgttccttctaccaacaaattagtaatccaaagaattgtgattacacatttgttaaaagctattttagtgtacctcatttttg |
288 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32640545 |
ttggttgttccttgttccaacaaattagtaatccaaagaattgtgattacacatttgttaaaagctattttagtgtacctcatttttg |
32640632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University