View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20760_low_2 (Length: 654)
Name: NF20760_low_2
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20760_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 213 - 637
Target Start/End: Original strand, 37580340 - 37580778
Alignment:
| Q |
213 |
acatttaattttattgaaagnnnnnnncaagtgtctcattgtttgttgatttgagaattagtttcataacatgtttaataacttgagatgcttgttgagg |
312 |
Q |
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| T |
37580340 |
acattcaattttattgaaagaaaaaaacaagtgtctcattgtttgttgatttgagaattagtttcataacatgtctaataacttgagatgcttgttgagg |
37580439 |
T |
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| Q |
313 |
atcaaaaccctaattatgatggttaggaaaaaatatattgtgttctattgtggtgatgccatggcacacccaacactgcctatttatatatttgtctact |
412 |
Q |
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| T |
37580440 |
atcaaaaccctagttatgatggttaggaaaaaatatattgtgttctattgtggtgatgccatggcacacccaacactgcctatttatatatttgtctact |
37580539 |
T |
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| Q |
413 |
ataacatgagatatgtatatacactttataactttttatcggttctcgtcgaacaaaacttttcctttctttctgtaatgacctaaaaaccaacacatga |
512 |
Q |
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| T |
37580540 |
ataacatgagatatgtatatacactttataactttttatcggttctcgtcaaacaaaacttttcctttctttctgtaatgacctaaaaaccaacacatga |
37580639 |
T |
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| Q |
513 |
taaaataaacacatacatggagacgagaaatgtcataatttgggttcgaacctagaaatctatat--------------atcaaactactaaactgtaac |
598 |
Q |
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| T |
37580640 |
taaaataaacacatacatggagacgagaaatgtcataatttgggttcgaacctagaaatctatataaaatattttcagaatcaaaccactaaactgtaac |
37580739 |
T |
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| Q |
599 |
aatgagaaacaaatgaattaacaaaatcaacatgaaaat |
637 |
Q |
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| T |
37580740 |
aatgagaaacaaatgaattaacaaaatcaacatgaaaat |
37580778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 37580117 - 37580314
Alignment:
| Q |
12 |
atgaatgacggtacacttaagcaatgagaggtcacattaagttgggtccaaacccagtatgcgacaaaatgcgtgtcaaacaaaggaacttcacccattt |
111 |
Q |
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| T |
37580117 |
atgaatgacggtacacttaagcaatgagaggtcacattaagttgggtccaaacccagtatgcgacaaaatgcgtgtcaaacaaaggaacttcacccattt |
37580216 |
T |
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| Q |
112 |
acacattcaatgaacacagcatcatagtttgtcccaaaataaatatgaggattgtgatgttttgagagtgttcgtaacgtttctcttcgcgaaagctc |
209 |
Q |
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| T |
37580217 |
acacattcaatgaacacggcatcatagtttgtcccaaaataaatatgaggattgtgatgttttgagagggttcgtaacgtttctcttcgcaaaagctc |
37580314 |
T |
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