View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20760_low_23 (Length: 249)
Name: NF20760_low_23
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20760_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 5592361 - 5592588
Alignment:
| Q |
1 |
attgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatatgtctcatgagtaaggatg |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5592361 |
attgaaatgatccactaaagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatatgtctcatgagtaaggatg |
5592460 |
T |
|
| Q |
101 |
gcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgttacgtacatataccaaatgcttctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5592461 |
gcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgt----tacatataccaaatgcttctg |
5592556 |
T |
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| Q |
201 |
ttataaaccatgatattcataaatcatttagt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5592557 |
ttataaaccatgatattcataaatcatttagt |
5592588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5586092 - 5586309
Alignment:
| Q |
1 |
attgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatatgtctcatgagtaaggatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| |||| |
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| T |
5586092 |
attgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcgatgtcattttgctcctcaacacaagacccatctgtcccatgagtaaagatg |
5586191 |
T |
|
| Q |
101 |
gcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgttacgtacatataccaaatgcttctg |
200 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| | || |||||||||| ||| |
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| T |
5586192 |
gcacttggagtgcagcccaatagacctaacccagataacacatattttcttgctccaatttcatgtaaagcctgttcc----atgtaccaaatgcctcta |
5586287 |
T |
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| Q |
201 |
ttataaaccatgatattcataa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
5586288 |
ttataaaccatgatattcataa |
5586309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 5575618 - 5575795
Alignment:
| Q |
1 |
attgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatatgtctcatgagtaaggatg |
100 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| ||||| ||||| | |||||| ||| ||||| || ||||| | ||| ||||||||| |||| |
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| T |
5575618 |
attgaaatgatccactaaaaatttaagcttgaaattgaaaatcaatgcaggggcattttcctcatcaacgcaggacccgtttgttccatgagtaaagatg |
5575717 |
T |
|
| Q |
101 |
gcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgttac |
178 |
Q |
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|||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||| |||||||||| ||||||| |
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| T |
5575718 |
gcacttggtgtgcagcccaaaaggcctaaccctactaacacatattttctagctccaatgtcatgtaaagtctgttac |
5575795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 5580576 - 5580614
Alignment:
| Q |
136 |
taacacatattttcttgctccaatttcatgtaaagcctg |
174 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
5580576 |
taacacatattttcttgctccaatgtcatgtagagcctg |
5580614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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