View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20760_low_24 (Length: 244)
Name: NF20760_low_24
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20760_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 33540764 - 33540852
Alignment:
| Q |
18 |
ttcctaattgattatgtaacattccgaagtgattaatatttaacctatggattattaactattactaactaattaattattcaaatgag |
106 |
Q |
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| T |
33540764 |
ttcctaattgattatgtaacattccgaagtgattaatatttaacctatggattattaactattactaactaattaattattcaactgag |
33540852 |
T |
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Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 33540852 - 33540764
Alignment:
| Q |
139 |
ctcatttgaataattaattagttagtaatagttaataatccataggttaaatattaatcacttcggaatgttacataatcaattaggaa |
227 |
Q |
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| T |
33540852 |
ctcagttgaataattaattagttagtaatagttaataatccataggttaaatattaatcacttcggaatgttacataatcaattaggaa |
33540764 |
T |
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