View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20760_low_25 (Length: 240)
Name: NF20760_low_25
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20760_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 3659644 - 3659853
Alignment:
| Q |
18 |
tatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagcacttcctcgtcatcttcaacaccctgataagagtccacaacatctaca |
117 |
Q |
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| T |
3659644 |
tatatctccgtcatcgctactacgtgttgatcctccactgtcccccaccagcacttcctcgtcatcttcaacaccctgagaagagtccacaacatctaca |
3659743 |
T |
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| Q |
118 |
actgcaaactttctattctccaaaacctcgccttggtcatcatttgaggaacttccatctgattcacaagttcttgtgctataaacctcacaaacattac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3659744 |
actgcaaactttctattctccaaaacctcgccttggtcatcatttgaggaacttccatccgattcacaagttcttgtgctataaacctcacaaacattac |
3659843 |
T |
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| Q |
218 |
cattctctgc |
227 |
Q |
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|||||||||| |
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| T |
3659844 |
cattctctgc |
3659853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 3653393 - 3653449
Alignment:
| Q |
18 |
tatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagcacttc |
74 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3653393 |
tatatctccgtcatcgctactacgtgttgatcctccactgtcctccaccagaacttc |
3653449 |
T |
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