View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20760_low_27 (Length: 234)

Name: NF20760_low_27
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20760_low_27
NF20760_low_27
[»] chr8 (10 HSPs)
chr8 (87-218)||(34255985-34256125)
chr8 (87-218)||(18811380-18811520)
chr8 (126-218)||(27827705-27827797)
chr8 (87-218)||(31577815-31577955)
chr8 (87-218)||(43080274-43080414)
chr8 (126-218)||(5591482-5591574)
chr8 (126-218)||(15069287-15069379)
chr8 (126-217)||(17848209-17848300)
chr8 (87-218)||(21481168-21481308)
chr8 (87-127)||(13985445-13985485)
[»] chr7 (20 HSPs)
chr7 (87-218)||(13290021-13290161)
chr7 (87-218)||(38394612-38394752)
chr7 (87-218)||(36076-36216)
chr7 (87-218)||(1048811-1048951)
chr7 (126-218)||(44725249-44725341)
chr7 (128-218)||(7093983-7094073)
chr7 (87-218)||(7351173-7351313)
chr7 (126-219)||(21678733-21678826)
chr7 (87-218)||(22135429-22135569)
chr7 (87-218)||(40550456-40550596)
chr7 (125-218)||(7471503-7471596)
chr7 (126-218)||(18391650-18391742)
chr7 (126-218)||(24749261-24749353)
chr7 (126-218)||(6594012-6594104)
chr7 (126-218)||(28486239-28486331)
chr7 (87-208)||(24816896-24817025)
chr7 (126-195)||(31159234-31159302)
chr7 (126-218)||(47675616-47675708)
chr7 (126-218)||(26213394-26213486)
chr7 (128-218)||(48490004-48490094)
[»] chr5 (19 HSPs)
chr5 (126-218)||(658683-658775)
chr5 (87-218)||(34478941-34479081)
chr5 (87-218)||(31543350-31543490)
chr5 (87-218)||(10750315-10750455)
chr5 (87-218)||(15356371-15356511)
chr5 (87-218)||(23665663-23665803)
chr5 (126-218)||(6745733-6745825)
chr5 (126-218)||(18467349-18467441)
chr5 (126-218)||(29720972-29721064)
chr5 (126-218)||(9788700-9788792)
chr5 (126-218)||(20043650-20043741)
chr5 (126-218)||(27911097-27911189)
chr5 (126-218)||(16545034-16545126)
chr5 (126-218)||(25806126-25806218)
chr5 (126-218)||(40380713-40380805)
chr5 (127-181)||(18510957-18511011)
chr5 (134-218)||(13694620-13694703)
chr5 (126-218)||(26171364-26171456)
chr5 (126-218)||(534356-534448)
[»] chr4 (26 HSPs)
chr4 (87-218)||(16933670-16933810)
chr4 (126-214)||(3578220-3578308)
chr4 (126-221)||(12395378-12395473)
chr4 (126-221)||(12400340-12400435)
chr4 (126-214)||(22134143-22134231)
chr4 (134-218)||(22782259-22782343)
chr4 (128-218)||(47563476-47563566)
chr4 (87-218)||(11008090-11008230)
chr4 (87-218)||(22046237-22046377)
chr4 (87-218)||(52094841-52094981)
chr4 (126-205)||(18537039-18537118)
chr4 (128-218)||(26558308-26558398)
chr4 (128-218)||(36379005-36379095)
chr4 (126-218)||(5136689-5136781)
chr4 (134-218)||(9175994-9176078)
chr4 (126-211)||(5872412-5872497)
chr4 (126-218)||(7123305-7123397)
chr4 (126-218)||(8394016-8394107)
chr4 (134-218)||(10113585-10113669)
chr4 (126-218)||(22802259-22802351)
chr4 (134-218)||(36921020-36921104)
chr4 (135-218)||(5207142-5207225)
chr4 (129-164)||(5350501-5350536)
chr4 (87-129)||(11435626-11435668)
chr4 (168-218)||(12402618-12402668)
chr4 (126-203)||(14788970-14789047)
[»] chr2 (8 HSPs)
chr2 (87-218)||(19503858-19503998)
chr2 (126-218)||(21520216-21520308)
chr2 (126-218)||(22405452-22405544)
chr2 (126-218)||(34574680-34574772)
chr2 (87-218)||(36560663-36560803)
chr2 (134-214)||(35217496-35217576)
chr2 (126-205)||(6263689-6263768)
chr2 (129-206)||(42019369-42019446)
[»] chr1 (21 HSPs)
chr1 (126-218)||(28203221-28203313)
chr1 (126-218)||(51750702-51750794)
chr1 (87-218)||(51758151-51758291)
chr1 (128-218)||(28841089-28841179)
chr1 (87-210)||(3805668-3805800)
chr1 (87-218)||(16226785-16226925)
chr1 (126-216)||(31424546-31424636)
chr1 (126-218)||(6996249-6996341)
chr1 (134-218)||(13127257-13127341)
chr1 (87-218)||(47177979-47178119)
chr1 (128-218)||(28222900-28222990)
chr1 (126-218)||(20300796-20300888)
chr1 (128-211)||(13784793-13784876)
chr1 (126-218)||(27338655-27338747)
chr1 (126-218)||(31657801-31657893)
chr1 (126-218)||(31736998-31737090)
chr1 (126-213)||(50168833-50168920)
chr1 (128-218)||(8348587-8348677)
chr1 (126-211)||(3157260-3157345)
chr1 (126-218)||(50078316-50078408)
chr1 (126-205)||(25250816-25250895)
[»] chr3 (34 HSPs)
chr3 (90-218)||(5192249-5192386)
chr3 (126-218)||(3315326-3315418)
chr3 (87-218)||(11168697-11168837)
chr3 (134-218)||(456559-456643)
chr3 (126-218)||(5898053-5898145)
chr3 (128-216)||(27421284-27421372)
chr3 (87-218)||(37407238-37407378)
chr3 (126-218)||(43226721-43226813)
chr3 (126-215)||(1619999-1620088)
chr3 (134-218)||(6065315-6065399)
chr3 (126-218)||(22834487-22834579)
chr3 (126-218)||(23199617-23199709)
chr3 (126-218)||(23634090-23634181)
chr3 (127-218)||(10957845-10957936)
chr3 (128-214)||(42990945-42991031)
chr3 (126-218)||(6717110-6717202)
chr3 (126-218)||(10209798-10209890)
chr3 (126-218)||(4600198-4600290)
chr3 (126-218)||(5259801-5259893)
chr3 (87-218)||(9635602-9635742)
chr3 (126-218)||(18098693-18098784)
chr3 (126-218)||(29811466-29811558)
chr3 (126-218)||(53597870-53597962)
chr3 (144-218)||(7769218-7769291)
chr3 (128-218)||(43422990-43423080)
chr3 (87-211)||(7762820-7762953)
chr3 (134-218)||(28101530-28101614)
chr3 (128-177)||(25634522-25634571)
chr3 (142-218)||(4310032-4310108)
chr3 (126-218)||(10056842-10056934)
chr3 (126-218)||(10059064-10059156)
chr3 (126-218)||(10061286-10061378)
chr3 (126-218)||(10063508-10063600)
chr3 (126-218)||(10065730-10065822)
[»] chr6 (19 HSPs)
chr6 (87-218)||(33309506-33309646)
chr6 (128-218)||(12936771-12936861)
chr6 (126-218)||(5408548-5408640)
chr6 (126-218)||(5412873-5412965)
chr6 (126-218)||(25462987-25463079)
chr6 (87-218)||(26067917-26068057)
chr6 (87-218)||(12157868-12158008)
chr6 (87-218)||(26932085-26932225)
chr6 (135-218)||(3395070-3395153)
chr6 (127-218)||(26944190-26944281)
chr6 (128-206)||(12911092-12911170)
chr6 (128-218)||(3631465-3631555)
chr6 (86-218)||(30443909-30444050)
chr6 (126-218)||(16553273-16553365)
chr6 (126-218)||(16629829-16629921)
chr6 (126-181)||(11137236-11137291)
chr6 (129-218)||(17012731-17012820)
chr6 (166-218)||(15534124-15534176)
chr6 (126-218)||(34165481-34165573)
[»] scaffold1899 (1 HSPs)
scaffold1899 (126-218)||(289-381)
[»] scaffold0140 (1 HSPs)
scaffold0140 (87-218)||(22743-22883)
[»] scaffold0025 (1 HSPs)
scaffold0025 (126-218)||(73039-73131)
[»] scaffold0127 (1 HSPs)
scaffold0127 (87-176)||(12439-12537)
[»] scaffold0004 (1 HSPs)
scaffold0004 (128-218)||(80533-80623)
[»] scaffold0016 (1 HSPs)
scaffold0016 (126-218)||(115200-115292)
[»] scaffold0133 (1 HSPs)
scaffold0133 (129-218)||(26412-26501)
[»] scaffold0011 (1 HSPs)
scaffold0011 (134-218)||(34223-34307)
[»] scaffold0005 (1 HSPs)
scaffold0005 (126-203)||(50683-50760)


Alignment Details
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 34256125 - 34255985
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggc---------cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||         ||||| ||||||||||||||| ||||||||||| ||| | || |||||||    
T  34256125 accatgtcacaagcggagaagaccgagatggtggacaaggctatgagtgccattgtcttgtgcctcggggacaaagttttgagggatgtcgcgaaggaac 34256026  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  34256025 caaccgcaacatcgatgtggtcaaagttggagtcgttgtat 34255985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 18811380 - 18811520
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcc---------attgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| ||||||         |||| ||||||||||||||||||||||||||||||  |||||||||||     
T  18811380 accatgtcacaagcggagaagaccgagatggtggacaaggcctggagtgtcattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaag 18811479  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||||| | ||||| |||| |||||||||    
T  18811480 caaccgcggcatcgatgtgggcaaagatggaatctttgtat 18811520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 27827705 - 27827797
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||||||||||||||  ||||||||||| |||||||  ||||||||| | |||||||||| |||||||||    
T  27827705 gccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaagcaaccgcggcatcgatgtgggcaaagttggaatctttgtat 27827797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 31577955 - 31577815
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| ||||| ||||||||||||||||||||| |||||||         ||| ||||||||||||||||||||||||||||||  |||| |||||||    
T  31577955 accatgtcacaagaggagaagatcgagatggtggacaaggccagaagtgtcattgtcttgtgcctcggggataaagttttgagagaggtagcgaaggaac 31577856  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||  ||  ||||||||| |||||||||||||||| |||||    
T  31577855 caattgcgtcatcgatgtggtcaaagttggagtctgtgtat 31577815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 43080274 - 43080414
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||||         ||| |||||||||||| |||||||||||||||||  |||||||||||     
T  43080274 accatgtcacaagcggagaagaccgagatggtggacaaggccaggagtgccattgtcttgtgcctcggagataaagttttgagagaagtagcaaaggaag 43080373  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||||| | |||||||||| |||||||||    
T  43080374 caaccgcggcatcgatgtgggcaaagttggaatctttgtat 43080414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 5591482 - 5591574
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||||||||||| |||||||||||||| ||| | || ||||||||||||||  | ||||||| ||||||||||||||| ||||||    
T  5591482 gccattgtcttgtgcctcggtgataaagttttgagggatgtcgcgaaggaaccaaccgcggcgtcgatgtggtcaaagttggagtcattgtat 5591574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 15069287 - 15069379
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||| |||||||||||||||||||| |||  ||||||| |||||||| ||  ||||||||| | |||||||||| |||||||||    
T  15069287 gccattgtcttgttcctcggggataaagttttgaaagaagtagcaaatgaaccaactgcggcatcgatgtgggcaaagttggaatctttgtat 15069379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 17848209 - 17848300
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgta 217  Q
    ||||||| ||| ||||||| |||||||||||| ||  ||||||| |||||||||| |||   |||||||| |||||||||||||||||||||    
T  17848209 gccattgtcttttgcctcgaggataaagttttaagtcatttagcgaaggaaccaatcgcggaatcgatgtggtcaaagttggagtctttgta 17848300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 21481168 - 21481308
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| ||||||||||||||||||||||||||  |||||||         |||  ||||||||||| |||||| ||||||||||  |||| || ||||    
T  21481168 accatgtcacaagcggagaagatcgagatggtgggcaaggccaagagtgccattgttttgtgcctcggagataaatttttgagagaagtagcgaatgaac 21481267  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||| |||| ||||||||| || | |||||||    
T  21481268 caaccgcgacatcaatgtggtcaaagttcgaatatttgtat 21481308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 13985485 - 13985445
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggc 127  Q
    ||||||| |||||||||||||| |||||||||||| |||||    
T  13985485 accatgtcacaagcggagaagaccgagatggtggacaaggc 13985445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 13290161 - 13290021
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||||         ||| |||||||||| |||||||||||||||||||| ||||||||||||    
T  13290161 accatgtcacaagcggagaagaccgagatggtggacaaggccagaagtgtcattgtcttgtgcctcagggataaagttttgagagatgtagcaaaggaac 13290062  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||  |||| ||||| ||||||||||||||| ||||||    
T  13290061 caaccgggacattgatgtggtcaaagttggagtcattgtat 13290021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 38394612 - 38394752
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||||         ||| ||||||||||||||||||||||||||||||  |||||||||||     
T  38394612 accatgtcacaagcggagaagaccgagatggtggacaaggccaggagtgccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaag 38394711  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||||| | |||||||||| |||||||||    
T  38394712 caaccgcggcatcgatgtgggcaaagttggaatctttgtat 38394752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 36076 - 36216
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||||         ||| ||||||||||||||||||||||||||||||  |||||||||||     
T  36076 accatgtcacaagcggagaagaccgagatggtggacaaggccaggagtgccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaag 36175  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    | |||||  ||||||||| | |||||||||| |||||||||    
T  36176 ctaccgcggcatcgatgtgggcaaagttggaatctttgtat 36216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 1048951 - 1048811
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataagg---------ccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| ||||         |||||| ||||||||||||||||||||||||||||||  |||||||||||     
T  1048951 accatgtcacaagcggagaagaccgagatggtggacaaggtcaggagtgccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaag 1048852  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||| | | |||||||||| |||||||||    
T  1048851 caaccgcggcatcgatatgggcaaagttggaatctttgtat 1048811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 44725249 - 44725341
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||  ||||||| | | |||||||||| |||||||||    
T  44725249 gccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaaccaaccgcggcatcgatttgggcaaagttggaatctttgtat 44725341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 7094073 - 7093983
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||| ||| ||||| ||||||||||||||||||||  ||||||||||| ||||||| |||||||||| | ||||||||||||||||||||    
T  7094073 cattgtcttatgccttggggataaagttttgagagaagtagcaaaggaagcaaccgcgacatcgatgtgggcaaagttggagtctttgtat 7093983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 7351313 - 7351173
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| || ||||||||||| |||||||||||| |||||||         ||| |||||||||||||||||||||||||| |||  |||||||||||     
T  7351313 accatgtcacgagcggagaagaccgagatggtggacaaggccaggagtgccgttgtcttgtgcctcggggataaagttttgaaagaagtagcaaaggaag 7351214  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||||| | |||||||||| |||||||||    
T  7351213 caaccgcggcatcgatgtgggcaaagttggaatctttgtat 7351173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 21678733 - 21678826
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtatt 219  Q
    ||||||| ||||||||||||| ||||||||||||||||  || | || ||||||||||| |||||||||| ||||||||| || ||||||||||    
T  21678733 gccattgtcttgtgcctcgggaataaagttttgagagaagtaacgaaagaaccaaccgcgacatcgatgtggtcaaagttcgaatctttgtatt 21678826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 22135429 - 22135569
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| ||||||          ||| ||||||||||||||||||||||||||||||  |||||||||||     
T  22135429 accatgtcacaagcggagaagaccgagatggtggacaaggcccggagtgccgttgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaag 22135528  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  |||| || | | |||||||||| |||||||||    
T  22135529 caaccgcggcatcaatatgggcaaagttggaatctttgtat 22135569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 40550456 - 40550596
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| ||||||          ||| ||||||||||||||||||||||||||||||  |||||||||||     
T  40550456 accatgtcacaagcggagaagaccgagatggtggacaaggcccggagtgccgttgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaag 40550555  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  |||| || | | |||||||||| |||||||||    
T  40550556 caaccgcggcatcaatatgggcaaagttggaatctttgtat 40550596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 7471596 - 7471503
Alignment:
Q  125 ggccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||| ||||||||||||| ||||||||| ||||||  || |||||||  |||||||  ||||||||| |||||||||||| |||||||||    
T  7471596 ggccattgtcttgtgcctcgggaataaagtttcgagagaagtaacaaaggatacaaccgcggcatcgatgtggtcaaagttggaatctttgtat 7471503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 18391742 - 18391650
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||||||||||| ||| | || ||||||||||||||  ||||||| | ||| |||||||| || ||||||    
T  18391742 gccattgtcttgtgcctcggggataaagttttgagggatgtcgcgaaggaaccaaccgcggcatcgatatggtctaagttggaatcgttgtat 18391650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 24749261 - 24749353
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||||||||||||||  ||||||| |||||||||    ||||||||| | |||||||| | |||||||||    
T  24749261 gccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaagaaccaaccatggcatcgatgtgggcaaagttgaaatctttgtat 24749353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 6594104 - 6594012
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||| ||||||||||| ||| | || ||||||||||||||  ||||||| | ||| |||||||| || ||||||    
T  6594104 gccattgtcttgtgcctcggggacaaagttttgagggatgtcgcgaaggaaccaaccgcggcatcgatatggtctaagttggaatcgttgtat 6594012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 28486239 - 28486331
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||| ||||||||||   ||||| |||| |||||||  ||||||||| ||||||||| || | |||||||    
T  28486239 gccattgtcttgtgcctcggggataaaattttgagagaagcagcaacggaaacaaccgcggcatcgatgtggtcaaagttcgaatatttgtat 28486331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 24817025 - 24816896
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| || ||||||||||| |||||||||||| |||||||         ||| ||| ||||||||||||||||||| ||||||  || | |||||||    
T  24817025 accatgtcacgagcggagaagaccgagatggtggacaaggccaggagtgtcattgtcttatgcctcggggataaagttt-gagagaagtaacgaaggaac 24816927  T
Q  178 caaccgcaacatcgatgtagtcaaagttgga 208  Q
    ||||||| |||||||||  ||||||||||||    
T  24816926 caaccgcgacatcgatgcggtcaaagttgga 24816896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 31159302 - 31159234
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgt 195  Q
    ||||||| ||||||| ||||||||||||||||||||||  ||||||||||| |||||||  |||||||||    
T  31159302 gccattgtcttgtgc-tcggggataaagttttgagagaagtagcaaaggaagcaaccgcggcatcgatgt 31159234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 47675708 - 47675616
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||||||| || ||||||||||| ||| | ||||||||||| |||||  | ||||||| ||||||||| ||||| ||||||    
T  47675708 gccattgtattgtgcctcggtgacaaagttttgagggatgtcgcaaaggaacctaccgcggcgtcgatgtggtcaaagtttgagtcattgtat 47675616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 26213394 - 26213486
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| | |||||| |||||||||| ||||||||||| |||| |||||||||| ||    ||| |||| |||||| |||||||| ||||||    
T  26213394 gccattgtcatgtgccacggggataaatttttgagagatgtagcgaaggaaccaatcgtggaatcaatgtggtcaaatttggagtcattgtat 26213486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 48490004 - 48490094
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||| |||||||||||| || ||||| ||||| ||| | || |||||||| || ||  | ||||||| ||||||||||||||| ||||||    
T  48490004 cattgtcttgtgcctcggtgacaaagtattgagggatgtcgcgaaggaacctactgcggcgtcgatgtggtcaaagttggagtcattgtat 48490094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 658683 - 658775
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||| ||||||||| || | |||||||    
T  658683 gccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaaccaaccgcgacatcgatgtggtcaaagttcgaatatttgtat 658775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 34479081 - 34478941
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| ||||| |||||||| |||||||||||| |||||||         ||| ||||||||||||||||||||||||||||||  |||||||||||     
T  34479081 accatgtcacaagaggagaagaccgagatggtggacaaggccaggagtgccgttgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaag 34478982  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||||||||| | |||||||||| |||||||||    
T  34478981 caaccgcgacatcgatgtgggcaaagttggaatctttgtat 34478941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 31543350 - 31543490
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| | |||||||||||| |||||||||||| |||||||         ||| ||||||||||||||||||||||||||||||  |||||||||||     
T  31543350 accatgtcataagcggagaagaccgagatggtggacaaggccaggagtgccgttgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaag 31543449  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||||||||| | ||||||| || |||||||||    
T  31543450 caaccgcgacatcgatgtgggcaaagttagaatctttgtat 31543490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 10750315 - 10750455
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| || ||||||||||| |||||||||||| |||||||         ||| ||||||||||||||||||||||||||||||  ||| |||||||     
T  10750315 accatgtcacgagcggagaagaccgagatggtggacaaggccaggagtgctgttgtcttgtgcctcggggataaagttttgagagaagtaggaaaggaag 10750414  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||||| | |||||||||| |||||||||    
T  10750415 caaccgcggcatcgatgtgggcaaagttggaatctttgtat 10750455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 15356511 - 15356371
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| ||||||          ||| ||||||||||||||||||||||||||||||  |||||||||||     
T  15356511 accatgtcacaagcggagaagaccgagatggtggacaaggcccggagtgccgttgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaag 15356412  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||| | | |||||||||| |||||||||    
T  15356411 caaccgcggcatcgatatgggcaaagttggaatctttgtat 15356371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 23665663 - 23665803
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| ||||||          ||| ||||||||||||||||||||||||||||||  |||||||||||     
T  23665663 accatgtcacaagcggagaagaccgagatggtggacaaggcccggagtgccgttgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaag 23665762  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||| | | |||||||||| |||||||||    
T  23665763 caaccgcggcatcgatatgggcaaagttggaatctttgtat 23665803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 6745733 - 6745825
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||||||||| ||||||  |||| |||| | |||||||| | |||||||||    
T  6745733 gccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaacgaaccgcggcatcaatgtgggcaaagttgtaatctttgtat 6745825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 18467349 - 18467441
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||||| ||||| |||||||||||||||||  |||||||||||| |||||| |||||||| | | |||||||||| |||||||||    
T  18467349 gccattgtcttgtgtctcggagataaagttttgagagaagtagcaaaggaacgaaccgcgacatcgatatgggcaaagttggaatctttgtat 18467441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 29720972 - 29721064
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||| ||||||||||| ||| | || ||||||||||||||  ||||||||| |||||||||||| || ||||||    
T  29720972 gccattgtcttgtgcctcggggacaaagttttgagggatgtcgcgaaggaaccaaccgcggcatcgatgtggtcaaagttggaatcgttgtat 29721064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 9788792 - 9788700
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||| ||||||||||| ||| | || ||||||||||||||  ||||||| | |||||||||||| || ||||||    
T  9788792 gccattgtcttgtgcctcggggacaaagttttgagggatgtcgcgaaggaaccaaccgcggcatcgatatggtcaaagttggaatcgttgtat 9788700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 20043650 - 20043741
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||||||||||||||| |||||||||| |||| |||||||||| | || ||||||||||||||||||| || | |||||||    
T  20043650 gccattgttttgtgcctcggggataaagatttgagagatgtagcgaaggaaccaa-ctcagcatcgatgtagtcaaagttcgaatatttgtat 20043741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 27911097 - 27911189
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||||||||||| |||||||||||||||||  ||||||||||| |||| ||  ||||||||| ||||||||| || | |||||||    
T  27911097 gccattgtcttgtgcctcggagataaagttttgagagaagtagcaaaggaatcaactgcggcatcgatgtggtcaaagttcgaatatttgtat 27911189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 16545034 - 16545126
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||| ||||||||||| ||| | || ||||||||||||||  ||||||| | ||| |||||||| || ||||||    
T  16545034 gccattgtcttgtgcctcggggacaaagttttgagggatgtcgcgaaggaaccaaccgcggcatcgatatggtctaagttggaatcgttgtat 16545126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 25806126 - 25806218
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||| ||||||||| ||||||   ||||| |||| |||||||| ||||||||| ||||||||| || | |||||||    
T  25806126 gccattgtcttgtgcctcgggtataaagtttcgagagaagcagcaatggaaacaaccgcagcatcgatgtggtcaaagttcgaatatttgtat 25806218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 40380713 - 40380805
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||| ||||||||||| ||| | || ||||||||||||||  ||||||| | ||| |||||||| || ||||||    
T  40380713 gccattgtcttgtgcctcggggacaaagttttgagggatgtcgcgaaggaaccaaccgcggcatcgatatggtctaagttggaatcgttgtat 40380805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 18510957 - 18511011
Alignment:
Q  127 ccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaac 181  Q
    |||||| ||||||||||||||||||||||| |||| |  ||||||||||||||||    
T  18510957 ccattgtcttgtgcctcggggataaagtttcgagataagtagcaaaggaaccaac 18511011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 13694703 - 13694620
Alignment:
Q  134 cttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||||||||||||||||||||||| ||| |  | |||||||| ||||| | || ||||| |||||| |||||||| ||||||    
T  13694703 cttgtgcctcggggataaagttttgag-gatatcacgaaggaacctaccgcgatattgatgtggtcaaatttggagtcgttgtat 13694620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 26171364 - 26171456
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||| ||| |||||||| || ||| | || |||||||||||||   ||||||| | |||||||||||| || ||||||    
T  26171364 gccattgtcttgtgcctcgaggacaaagttttaagggatgtcgcgaaggaaccaaccgtggcatcgatatggtcaaagttggaatcgttgtat 26171456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 534356 - 534448
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||||||||||| || ||||||||||| ||| |  | |||||||| || ||  | | ||||| ||||||||||||||| ||||||    
T  534356 gccattgtcttgtgcctcggtgacaaagttttgagggatgtcccgaaggaacctacggcggcgttgatgtggtcaaagttggagtcattgtat 534448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 16933810 - 16933670
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||||         ||| ||||||||||||||||||||||||||||||  |||||||||||     
T  16933810 accatgtcacaagcggagaagaccgagatggtggacaaggccaggagtgccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaag 16933711  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||||| | |||||||||| |||||||||    
T  16933710 caaccgcggcatcgatgtgggcaaagttggaatctttgtat 16933670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 3578308 - 3578220
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtcttt 214  Q
    ||||||| |||||||||| | |||||||||||||||||| |||  |||||||||||||| |||||||||| ||||||||||||||||||    
T  3578308 gccattgtcttgtgcctcagagataaagttttgagagatgtagtgaaggaaccaaccgcgacatcgatgtggtcaaagttggagtcttt 3578220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 12395473 - 12395378
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtattga 221  Q
    ||||||| ||||||||||||||||||| ||||||||||  |||||||||| |||||||  |||||||||| | |||||||||| ||||||||||||    
T  12395473 gccattgtcttgtgcctcggggataaaattttgagagaagtagcaaaggagccaaccgtgacatcgatgtgggcaaagttggaatctttgtattga 12395378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 12400435 - 12400340
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtattga 221  Q
    ||||||| ||||||||||||||||||| ||||||||||  |||||||||| |||||||  |||||||||| | |||||||||| ||||||||||||    
T  12400435 gccattgtcttgtgcctcggggataaaattttgagagaagtagcaaaggagccaaccgtgacatcgatgtgggcaaagttggaatctttgtattga 12400340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 22134231 - 22134143
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtcttt 214  Q
    ||||||| ||||||||||||||||||||||||||||||  ||||||||||| |||||||  ||||||||| | |||||||||| |||||    
T  22134231 gccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaagcaaccgcggcatcgatgtgggcaaagttggaatcttt 22134143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 22782343 - 22782259
Alignment:
Q  134 cttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||||||||||||||||||||||||||  ||||||||||| |||||||  ||||||||| | |||||||||| |||||||||    
T  22782343 cttgtgcctcggggataaagttttgagagaagtagcaaaggaagcaaccgcggcatcgatgtgggcaaagttggaatctttgtat 22782259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 47563476 - 47563566
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||| ||||||||||||||||||||||||||||||  ||||||||||  ||||||| |||||||||| |  ||||||||| |||||||||    
T  47563476 cattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggatacaaccgcgacatcgatgtgggaaaagttggaatctttgtat 47563566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 11008230 - 11008090
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| ||||||||||||||  ||||||||||| |||||||         ||| |||||||||||| |||||||||||||||||  |||||||||||     
T  11008230 accatgtcacaagcggagaagactgagatggtggacaaggccaggagtgccgttgtcttgtgcctcggagataaagttttgagagaagtagcaaaggaag 11008131  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||||| |  |||| |||| |||||||||    
T  11008130 caaccgcggcatcgatgtgggaaaagatggaatctttgtat 11008090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 22046377 - 22046237
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||||         ||| ||||||||||| ||||||||||||||||||  |||||||| ||     
T  22046377 accatgtcacaagcggagaagaccgagatggtggacaaggccaggtgtgccattgtcttgtgcctcgaggataaagttttgagagaagtagcaaagtaag 22046278  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||| |  ||||||||| | |||| ||||| |||||||||    
T  22046277 caacctcggcatcgatgtgggcaaatttggaatctttgtat 22046237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 52094981 - 52094841
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggc---------cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||         ||||| ||||||| |||| || ||||||||||| |||||  | |||||||    
T  52094981 accatgtcacaagcggagaagaccgagatggtggacaaggctatgagtgtcattgtcttgtgcttcggtgacaaagttttgagggatttcacgaaggaac 52094882  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    | |||||  ||||||||| ||||||||||||||| ||||||    
T  52094881 ctaccgcggcatcgatgtggtcaaagttggagtcattgtat 52094841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 18537118 - 18537039
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagtt 205  Q
    ||||||| ||||||||||||| |||||||||| |||||| |||| |||||||||| |||  ||||||||| |||||||||    
T  18537118 gccattgtcttgtgcctcgggaataaagttttaagagatgtagcgaaggaaccaatcgcggcatcgatgtggtcaaagtt 18537039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 26558308 - 26558398
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||| ||||||||||| |||||||||||| || ||| | |||||||||||||||||  ||| ||| | ||||||||||||||| ||||||    
T  26558308 cattgtcttgtgcctcgaggataaagttttaagggatgtcgcaaaggaaccaaccgcggcatggatatggtcaaagttggagtcgttgtat 26558398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 36379005 - 36379095
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||| ||||||||||||| |||||| |||||||||  |||| |||||||||||||   ||||||||||||||||||| || | |||||||    
T  36379005 cattgtcttgtgcctcgggaataaagatttgagagaagtagcgaaggaaccaaccgtggcatcgatgtagtcaaagttcgaatatttgtat 36379095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 5136689 - 5136781
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||| ||||||||||| ||| | || ||||||||||||||  ||||||| | ||| |||||||| || ||||||    
T  5136689 gccattgtcttgtgcctcggggacaaagttttgagggatgtcgcgaaggaaccaaccgcggcatcgatatggtctaagttggaatcgttgtat 5136781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 9176078 - 9175994
Alignment:
Q  134 cttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||||||| |||||||||||||||||  ||||||||||| ||||| | |||||||||| |  ||||| ||| |||||||||    
T  9176078 cttgtgcctcggagataaagttttgagagaagtagcaaaggaagcaaccacgacatcgatgtgggaaaagtgggaatctttgtat 9175994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 5872412 - 5872497
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtc 211  Q
    ||||||| |||||||||||| || ||||||||||| ||  | || ||||||||||||||  | ||||||| |||||||||||||||    
T  5872412 gccattgtcttgtgcctcggtgacaaagttttgagggaggtcgcgaaggaaccaaccgcgccgtcgatgtggtcaaagttggagtc 5872497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 7123305 - 7123397
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||| ||||||||||| ||| | || |||||||||| |||  ||||||| | ||| |||||||| || ||||||    
T  7123305 gccattgtcttgtgcctcggggacaaagttttgagggatgtcgcgaaggaaccaaacgcggcatcgatatggtctaagttggaatcgttgtat 7123397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 8394016 - 8394107
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||| ||||||| ||| | || ||||||||||||||  ||||||| | ||| |||||||| || ||||||    
T  8394016 gccattgtcttgtgcctcggggataaa-ttttgagggatgtcgcgaaggaaccaaccgcggcatcgatatggtctaagttggaatcgttgtat 8394107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 10113585 - 10113669
Alignment:
Q  134 cttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||||| || |||||||||| |||||| |  | ||||||||  |||||| |||||||| ||||||||||||||| ||||||    
T  10113585 cttgtgcctcaggaataaagttttcagagatgtcacgaaggaaccttccgcaatatcgatgtggtcaaagttggagtcattgtat 10113669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 22802351 - 22802259
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||| |||||| |||||||||   | |||||||| ||||||| ||||| |||| ||||||||| || | |||||||    
T  22802351 gccattgtcttgtgcctcgggaataaagatttgagagaagcaacaaaggaaacaaccgcgacatcaatgtggtcaaagttcgaatatttgtat 22802259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 36921104 - 36921020
Alignment:
Q  134 cttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||| ||||||||||||||||||||||||   ||||||||| |||| |||  ||||||||| ||||||||| || | |||||||    
T  36921104 cttgtacctcggggataaagttttgagagaagcagcaaaggatccaatcgcggcatcgatgtggtcaaagtttgaatatttgtat 36921020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 5207225 - 5207142
Alignment:
Q  135 ttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||||||||||||||| ||||| ||| | |  |||||||  ||||||||||||   | | ||||||||||||||||||||    
T  5207225 ttgtgcctcggggataaagtgttgagggatgttgtgaaggaacgtaccgcaacatcggcatgggcaaagttggagtctttgtat 5207142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 5350501 - 5350536
Alignment:
Q  129 attgacttgtgcctcggggataaagttttgagagat 164  Q
    |||| |||||||||||||||||||||||||||||||    
T  5350501 attgtcttgtgcctcggggataaagttttgagagat 5350536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 11435626 - 11435668
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca 129  Q
    ||||||| |||||||||||||| |||||||||||| |||||||    
T  11435626 accatgtcacaagcggagaagaccgagatggtggacaaggcca 11435668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 12402668 - 12402618
Alignment:
Q  168 gcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||||||||||||  |||||||||| | |||||||||| |||||||||    
T  12402668 gcaaaggaaccaaccgtgacatcgatgtgggcaaagttggaatctttgtat 12402618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 14789047 - 14788970
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaag 203  Q
    ||||||| ||||  ||||||||||||||||||||||||  ||||||| ||  | |||||  ||||||||| |||||||    
T  14789047 gccattgtcttgctcctcggggataaagttttgagagaagtagcaaaagatactaccgcggcatcgatgtggtcaaag 14788970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 19503998 - 19503858
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||||         ||| ||||||||||||||||||||||||||||||  |||||||||||     
T  19503998 accatgtcacaagcggagaagaccgagatggtggacaaggccaggagtgccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaag 19503899  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||||| | |||||||||| |||||||||    
T  19503898 caaccgcggcatcgatgtgggcaaagttggaatctttgtat 19503858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 21520308 - 21520216
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||| | |||||||||| |||||||||    
T  21520308 gccattgtcttgtgcctcggggataaatttttgagagaagtagcaaaggaaccaaccgcagcatcgatgtggccaaagttggaatctttgtat 21520216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 22405544 - 22405452
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||||||||||||||  |||| |||||||||||||| |||||||||| | |||||||||| |||||||||    
T  22405544 gccattgtcttgtgcctcggggataaagttttgagagaagtagcgaaggaaccaaccgcgacatcgatgtgggcaaagttggaatctttgtat 22405452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 34574772 - 34574680
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||| ||||||||||||| |||| |||||| |||||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  34574772 gccattgtcttgttcctcggggataaattttttagagatgtagcaaaggaaccaaccgcggcatcgatgtggtcaaagttggagtctttgtat 34574680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 36560803 - 36560663
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||||         ||| ||||||||||||||||||||||||||||||  |||||||||||     
T  36560803 accatgtcacaagcggagaagaccgagatggtggacaaggccaggagtgccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaag 36560704  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||| | | |||||||||| |||||||||    
T  36560703 caaccgcggcatcgatatgggcaaagttggaatctttgtat 36560663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 35217576 - 35217496
Alignment:
Q  134 cttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtcttt 214  Q
    ||||||||||||||||||||||||||||||  ||||||||||| |||||||  ||||||||| | |||||||||| |||||    
T  35217576 cttgtgcctcggggataaagttttgagagaagtagcaaaggaagcaaccgcggcatcgatgtgggcaaagttggaatcttt 35217496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 6263768 - 6263689
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagtt 205  Q
    ||||||| ||||||||||||| ||||||||| ||||||   | | |||||| |||||||  ||||||||| |||||||||    
T  6263768 gccattgtcttgtgcctcgggaataaagtttcgagagaagcaacgaaggaaacaaccgcggcatcgatgtggtcaaagtt 6263689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 42019446 - 42019369
Alignment:
Q  129 attgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttg 206  Q
    |||| |||||||||| |||||||||||||||| ||| | || |||||||| ||    |||||||||| ||||||||||    
T  42019446 attgtcttgtgcctctgggataaagttttgagggatgtcgcgaaggaacctacgatgacatcgatgtggtcaaagttg 42019369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 28203313 - 28203221
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||  ||||||||| | |||||||||| |||||||||    
T  28203313 gccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaaccaaccgcggcatcgatgtgggcaaagttggaatctttgtat 28203221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 51750702 - 51750794
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||||||||||||||  ||||||||||| |||||||  ||||||||| | |||||||||| |||||||||    
T  51750702 gccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaagcaaccgcggcatcgatgtgggcaaagttggaatctttgtat 51750794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 51758151 - 51758291
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||||         ||| ||||||||||||||||||| ||||||||||  |||||||||||     
T  51758151 accatgtcacaagcggagaagaccgagatggtggacaaggccaggagtgccattgtcttgtgcctcggggataaaattttgagagaagtagcaaaggaag 51758250  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||||||||| | |||| ||||| |||||||||    
T  51758251 caaccgcgacatcgatgtgggcaaaattggaatctttgtat 51758291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 28841089 - 28841179
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||| ||||||||||||||||||||||||||||||  ||||||||||| |||||||  ||||||||| | |||||||||| |||||||||    
T  28841089 cattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaagcaaccgcggcatcgatgtgggcaaagttggaatctttgtat 28841179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 210
Target Start/End: Complemental strand, 3805800 - 3805668
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| || ||||         ||| |||||| |||||||||||||||||||||||| |||| |||||||    
T  3805800 accatgtcacaagcggagaagaccgagatggtggacaatgccagaagtgtcattgtcttgtgtctcggggataaagttttgagagatatagcgaaggaac 3805701  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagt 210  Q
    ||||||| |||||||||| ||||| ||| ||||    
T  3805700 caaccgcgacatcgatgtggtcaacgttagagt 3805668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 16226785 - 16226925
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||||         ||| |||||||||||||||||||||||| |||||  || ||||||||     
T  16226785 accatgtcacaagcggagaagaccgagatggtggacaaggccaggagtgccgttgtcttgtgcctcggggataaagttttaagagaagtaacaaaggaag 16226884  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||||| | |||||||||| |||||||||    
T  16226885 caaccgcggcatcgatgtgggcaaagttggaatctttgtat 16226925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 31424636 - 31424546
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgt 216  Q
    ||||||| |||||||||||||||| |||||||||||||  ||||||||||||||||| | |||| ||||| | |||||||||| |||||||    
T  31424636 gccattgtcttgtgcctcggggatgaagttttgagagaagtagcaaaggaaccaaccacgacatagatgtgggcaaagttggaatctttgt 31424546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 6996249 - 6996341
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||| ||||||||||||||||||||||||  || ||||||| |||||||| |||||||||| ||||||||| || | |||||||    
T  6996249 gccattgtcttgtacctcggggataaagttttgagagaagtaacaaaggatccaaccgcgacatcgatgtggtcaaagttcgaatatttgtat 6996341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 13127341 - 13127257
Alignment:
Q  134 cttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||||| |||||||| ||||||||||| |||| ||| ||| |||||| ||||||||||  |||||||||||||||||||||    
T  13127341 cttgtgcctctgggataaaattttgagagatgtagcgaagtaactaaccgcgacatcgatgtcttcaaagttggagtctttgtat 13127257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 47177979 - 47178119
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| || ||||||||||| |||||||||||| |||||||         ||| |||||||||||||||||||||||| |||||  |||||||||||     
T  47177979 accatgtcacgagcggagaagaccgagatggtggacaaggccaggagtgccgttgtcttgtgcctcggggataaagttttaagagaagtagcaaaggaag 47178078  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||| |||  ||||||||| | |||||||||| |||||||||    
T  47178079 caatcgcggcatcgatgtgggcaaagttggaatctttgtat 47178119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 28222990 - 28222900
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||| |||||||||||| || ||||||||||| ||| | || ||||||||||||||| ||||||||| ||||||||||| ||| ||||||    
T  28222990 cattgtcttgtgcctcggtgacaaagttttgagggatgtcgcgaaggaaccaaccgcagcatcgatgtggtcaaagttggtgtcattgtat 28222900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 20300796 - 20300888
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||||||||||| |||||||||||||||||  |||||||||||| |||||   ||||||| | | |||||||||| |||||||||    
T  20300796 gccattgtcttgtgcctcggagataaagttttgagagaagtagcaaaggaacaaaccgtggcatcgatatgggcaaagttggaatctttgtat 20300888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 13784876 - 13784793
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtc 211  Q
    ||||| |||||||||| | |||||| ||||||| ||| | || |||||||| |||||||||||||||| |||||||||||||||    
T  13784876 cattgtcttgtgcctcagagataaaattttgagggatgtcgcgaaggaacctaccgcaacatcgatgtggtcaaagttggagtc 13784793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 27338747 - 27338655
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||| ||||||||| ||||||||||  |||||||||||  || |||  ||||||||| | |||||||||| |||||||||    
T  27338747 gccattgtcttgtgccttggggataaatttttgagagaagtagcaaaggaatgaatcgcggcatcgatgtgggcaaagttggaatctttgtat 27338655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 31657801 - 31657893
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||||||||||| || ||||||||||| ||| | |  ||||||||||||||  | ||||||| ||||||||||||||| ||||||    
T  31657801 gccattgtcttgtgcctcggtgacaaagttttgagggatgtcgtgaaggaaccaaccgcggcgtcgatgtggtcaaagttggagtcattgtat 31657893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 31737090 - 31736998
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||| ||||||||| ||||||   ||||||||||| ||||||  ||||||||| ||||||||| || | |||||||    
T  31737090 gccattgtcttgtgcctcgggtataaagtttcgagagaagcagcaaaggaacgaaccgcggcatcgatgtggtcaaagttcgaatatttgtat 31736998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 50168920 - 50168833
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctt 213  Q
    ||||||| |||||||||| | || ||||||||||| ||| | || |||||||||||| | || ||||| | |||||||||||||||||    
T  50168920 gccattgtcttgtgcctcagtgacaaagttttgagggatgtcgcgaaggaaccaaccacgacgtcgatatggtcaaagttggagtctt 50168833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 8348677 - 8348587
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||| ||| |||||| ||||||||||||||| |||  |||| ||| |||||||||   | ||||||| ||||||||| ||||||||||||    
T  8348677 cattgtcttatgcctcagggataaagttttgaaagaagtagcgaagaaaccaaccgtggcgtcgatgtggtcaaagttagagtctttgtat 8348587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 3157260 - 3157345
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtc 211  Q
    ||||||| |||||||||||| |  ||||||||||| ||| | || |||||||| |||||  | ||||||| |||||||||||||||    
T  3157260 gccattgtcttgtgcctcggtggcaaagttttgagggatgtcgcgaaggaacctaccgcggcgtcgatgtggtcaaagttggagtc 3157345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 50078408 - 50078316
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||| ||||||||| ||||||  |||| |||||| |||| ||  |||| |||| ||||||||| || | |||||||    
T  50078408 gccattgtcttgtgcctcgggaataaagtttcgagagaagtagcgaaggaaacaactgcggcatcaatgtggtcaaagtttgaatatttgtat 50078316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 25250895 - 25250816
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagtt 205  Q
    ||||||| ||||||||||  | ||||||||||||||||  ||||||||||| |||||||   |||||||| || ||||||    
T  25250895 gccattgtcttgtgcctcaagaataaagttttgagagaagtagcaaaggaaacaaccgcggtatcgatgtggttaaagtt 25250816  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 5192249 - 5192386
Alignment:
Q  90 atgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaa 180  Q
    |||| |||||||||||||| |||||||||||| |||||||         ||| ||||||||||||||||||||||||||||||  ||||||||||| |||    
T  5192249 atgtcacaagcggagaagaccgagatggtggacaaggccaagagtgccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaagcaa 5192348  T
Q  181 ccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    | || |||||||||| | |||||||||| |||||||||    
T  5192349 ctgcgacatcgatgtgggcaaagttggaatctttgtat 5192386  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 3315326 - 3315418
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||   |||||||||| | |||||||    
T  3315326 gccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaaccaaccgcgacatcgatgtgtgcaaagttggaatatttgtat 3315418  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 11168697 - 11168837
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggc---------cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||         ||||| |||||||||||||||||||||||||||| |  ||||| |||||     
T  11168697 accatgtcacaagcggagaagaccgagatggtggacaaggctaggagtgccattgtcttgtgcctcggggataaagttttgagataagtagcagaggaag 11168796  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||| ||||||||| | |||||||||| |||||||||    
T  11168797 caaccgcagcatcgatgtgggcaaagttggaatctttgtat 11168837  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 456559 - 456643
Alignment:
Q  134 cttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||||||| |||||||||||||||||  ||||||||||| ||||||| |||||||||| | |||||||||| |||||||||    
T  456559 cttgtgcctcggagataaagttttgagagaagtagcaaaggaagcaaccgcgacatcgatgtgggcaaagttggaatctttgtat 456643  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 5898053 - 5898145
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||||||||||||||||||||||||| |||  |||||||||||| |||||| |||||||| | | |||||||||| |||||||||    
T  5898053 gccattgtcttgtgcctcggggataaagttttgatagaagtagcaaaggaacgaaccgcgacatcgatatgggcaaagttggaatctttgtat 5898145  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 27421284 - 27421372
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgt 216  Q
    ||||| ||||||||| ||||||||||||||||||||| || | |||||||||||||| |||| ||||| ||||||||||||||| ||||    
T  27421284 cattgtcttgtgccttggggataaagttttgagagatgtaacgaaggaaccaaccgcgacattgatgtggtcaaagttggagtcgttgt 27421372  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 37407238 - 37407378
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggc---------cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||         ||||| ||||||||||||||| ||||||||||| ||| | || |||||||    
T  37407238 accatgtcacaagcggagaagaccgagatggtggacaaggctaggagtgccattgtcttgtgcctcggggacaaagttttgagggatgtcgcgaaggaac 37407337  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  |||| |||| ||||||||||||||| ||||||    
T  37407338 caaccgcggcatcaatgtggtcaaagttggagtcgttgtat 37407378  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 43226721 - 43226813
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||||||||||| |||||||||||||||||  |||||||||||| ||||||  ||||||||| | |||||||||| |||||||||    
T  43226721 gccattgtcttgtgcctcggagataaagttttgagagaagtagcaaaggaacgaaccgcggcatcgatgtgggcaaagttggaatctttgtat 43226813  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 1620088 - 1619999
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttg 215  Q
    ||||||| |||||||||||||||||||||||||| |||| |||| |||| || ||| ||  ||||||||| |||||||||||||||||||    
T  1620088 gccattgtcttgtgcctcggggataaagttttgatagatgtagcgaaggtacaaactgcggcatcgatgtggtcaaagttggagtctttg 1619999  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 6065399 - 6065315
Alignment:
Q  134 cttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||||||| ||||||||||||||||||  ||||||||||| |||||||  ||||||||| | |||||||||| |||||||||    
T  6065399 cttgtgcctcgaggataaagttttgagagaagtagcaaaggaagcaaccgcggcatcgatgtgggcaaagttggaatctttgtat 6065315  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 22834579 - 22834487
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||||||||||| |||||||||||||| ||| | || ||||||||||||||  | ||||||| ||||||||||||||| ||||||    
T  22834579 gccattgtcttgtgcctcggtgataaagttttgagggatgtcgcgaaggaaccaaccgcggcgtcgatgtggtcaaagttggagtcattgtat 22834487  T

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Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 23199709 - 23199617
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||| ||||||||||| ||| | || |||||||||||||| |||||||| | |||||||||||| || ||||||    
T  23199709 gccattgtcttgtgcctcggggacaaagttttgagggatgttgcgaaggaaccaaccgcgacatcgatatggtcaaagttggaatcgttgtat 23199617  T

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Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 23634090 - 23634181
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||||||||| |||||||||||||||||||  |||| |||||||||| |||| ||||||||  |||||||||||| |||||||||    
T  23634090 gccattgtcttgtgcctcagggataaagttttgagagaagtagcgaaggaaccaa-cgcatcatcgatgaggtcaaagttggaatctttgtat 23634181  T

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Target: chr3; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 10957936 - 10957845
Alignment:
Q  127 ccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||   ||||||| | | |||||||||| |||||||||    
T  10957936 ccattgtcttgtgcctcgaggataaagttttgagagaagtagcaaaggaaccaaccgtggcatcgatttgggcaaagttggaatctttgtat 10957845  T

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Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 42990945 - 42991031
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtcttt 214  Q
    ||||| |||||||||||| ||||||||||||||| |  |||||||||||| |||||| |||||||||| | |||||||||| |||||    
T  42990945 cattgtcttgtgcctcggagataaagttttgagaaaagtagcaaaggaacgaaccgcgacatcgatgtgggcaaagttggaatcttt 42991031  T

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Target: chr3; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 6717110 - 6717202
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||||||||||| ||| | || ||||||||||||||  ||||||| | ||| |||||||| || ||||||    
T  6717110 gccattgtcttgtgcctcggggataaagttttgagggatgtcgcgaaggaaccaaccgcggcatcgatatggtctaagttggaatcgttgtat 6717202  T

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Target: chr3; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 10209798 - 10209890
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||||||||||| ||| | || ||||||||||||||  ||||||| | ||| |||||||| || ||||||    
T  10209798 gccattgtcttgtgcctcggggataaagttttgagggatgtcgcgaaggaaccaaccgcggcatcgatatggtctaagttggaatcattgtat 10209890  T

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Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 4600290 - 4600198
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||| ||||||||||| ||| | || ||||||||||||||  ||||||| | ||| |||||||| || ||||||    
T  4600290 gccattgtcttgtgcctcggggacaaagttttgagggatgtcgcgaaggaaccaaccgcggcatcgatatggtctaagttggaatcgttgtat 4600198  T

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Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 5259893 - 5259801
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||| ||| |||||||| || ||| | || ||||||||||||||  |||| |||| ||||||||||||||| ||||||    
T  5259893 gccattgtcttgtgcctcgaggaaaaagttttaagggatgtcgcgaaggaaccaaccgcggcatctatgtggtcaaagttggagtcgttgtat 5259801  T

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Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 9635742 - 9635602
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggc---------cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||         ||||| ||| ||||||||||| ||||||||||| ||| | || |||||||    
T  9635742 accatgtcacaagcggagaagaccgagatggtggacaaggctaggagtgccattgtcttatgcctcggggacaaagttttgagggatgtcgcgaaggaac 9635643  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  |||| | || ||||||||||||| | ||||||    
T  9635642 caaccgcggcatctacgtggtcaaagttggagccgttgtat 9635602  T

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Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 18098784 - 18098693
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||| |||||||| ||||||||||||||||  |||||||||||||||||||  |||| |||| | ||||| |||| |||||||||    
T  18098784 gccattgtcttgcgcctcggg-ataaagttttgagagaagtagcaaaggaaccaaccgcggcatcaatgtgggcaaagatggaatctttgtat 18098693  T

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Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 29811466 - 29811558
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||||||||||| || ||||||||||| ||| | || |||||||| |||||| | || |||| ||||||||||||||| ||||||    
T  29811466 gccattgtcttgtgcctcggtgacaaagttttgagggatgtcgctaaggaacctaccgcagcgtccatgtggtcaaagttggagtcattgtat 29811558  T

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Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 53597870 - 53597962
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||| |||  |||||||||||||||||| |||  |||||| |||||||  ||||||||| |||||| ||| |||||||||||    
T  53597870 gccattgtcttgtgcttcgatgataaagttttgagagatgtagataaggaatcaaccgcggcatcgatgtggtcaaaattgaagtctttgtat 53597962  T

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Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 7769218 - 7769291
Alignment:
Q  144 ggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||||||||  |||||| ||| |||||||||||  || |||||||||| ||||||||||||||||||||||    
T  7769218 ggggataaagtttc-agagatgtagaaaaggaaccaattgcgacatcgatgtggtcaaagttggagtctttgtat 7769291  T

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Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 43423080 - 43422990
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||| ||| ||||| ||| ||||||||||||||||  |||||||||   ||||||| |||||||||| | |||||||||| |||||||||    
T  43423080 cattgtcttatgccttgggaataaagttttgagagaagtagcaaaggttacaaccgcgacatcgatgtgggcaaagttggaatctttgtat 43422990  T

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Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 7762820 - 7762953
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggc---------cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||         ||||| |||||||||||| || |||||||| || ||| | || |||||||    
T  7762820 accatgtcacaagcggagaagaccgagatggtggacaaggctaagagtgccattgtcttgtgcctcggtgacaaagttttaagggatgtcgcgaaggaac 7762919  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtc 211  Q
     ||||||   |||||||| |||||||||||||||    
T  7762920 taaccgcggaatcgatgtggtcaaagttggagtc 7762953  T

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Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 28101614 - 28101530
Alignment:
Q  134 cttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||||||||| ||||||||| || |||  ||||||| ||||||||||| ||||| |||| ||||||||| || | |||||||    
T  28101614 cttgtgcctcgggaataaagtttcgatagaagtagcaaaagaaccaaccgcgacatcaatgtggtcaaagttcgaatatttgtat 28101530  T

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Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 25634522 - 25634571
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||| ||||||||||||||||||||||||||||||  |||| |||||||    
T  25634522 cattgtcttgtgcctcggggataaagttttgagagaagtagcgaaggaac 25634571  T

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Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 4310108 - 4310032
Alignment:
Q  142 tcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||||||||||||||||||  |||||||||||| ||||||  |||| || | | |||||||| | |||||||||    
T  4310108 tcggggataaagttttgagagaagtagcaaaggaacgaaccgcggcatcaatatgggcaaagttgaaatctttgtat 4310032  T

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Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 10056842 - 10056934
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| | ||||||||||||| ||||||||||| ||| | || ||||||||||| ||  ||||||| | ||| |||||||| || ||||||    
T  10056842 gccattgtcctgtgcctcggggacaaagttttgagggatgtcgcgaaggaaccaactgcggcatcgatatggtctaagttggaatcgttgtat 10056934  T

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Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 10059064 - 10059156
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| | ||||||||||||| ||||||||||| ||| | || ||||||||||| ||  ||||||| | ||| |||||||| || ||||||    
T  10059064 gccattgtcctgtgcctcggggacaaagttttgagggatgtcgcgaaggaaccaactgcggcatcgatatggtctaagttggaatcgttgtat 10059156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 10061286 - 10061378
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| | ||||||||||||| ||||||||||| ||| | || ||||||||||| ||  ||||||| | ||| |||||||| || ||||||    
T  10061286 gccattgtcctgtgcctcggggacaaagttttgagggatgtcgcgaaggaaccaactgcggcatcgatatggtctaagttggaatcgttgtat 10061378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 10063508 - 10063600
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| | ||||||||||||| ||||||||||| ||| | || ||||||||||| ||  ||||||| | ||| |||||||| || ||||||    
T  10063508 gccattgtcctgtgcctcggggacaaagttttgagggatgtcgcgaaggaaccaactgcggcatcgatatggtctaagttggaatcgttgtat 10063600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 10065730 - 10065822
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| | ||||||||||||| ||||||||||| ||| | || ||||||||||| ||  ||||||| | ||| |||||||| || ||||||    
T  10065730 gccattgtcctgtgcctcggggacaaagttttgagggatgtcgcgaaggaaccaactgcggcatcgatatggtctaagttggaatcgttgtat 10065822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 33309506 - 33309646
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| || ||||||||||| |||||||||||| |||||||         ||| ||||||||||||||||||||||||||||||  |||||||||||     
T  33309506 accatgtcacgagcggagaagaccgagatggtggacaaggccaggagtgtcgttgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaag 33309605  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||| ||||||| | | |||||||||| |||||||||    
T  33309606 caaccgcagcatcgatatgggcaaagttggaatctttgtat 33309646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 12936861 - 12936771
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||| |||||||||  |||||||||||||||||||| |||| || |||||||||||  ||||||||| ||||||||||||||||||||||    
T  12936861 cattgtcttgtgccttagggataaagttttgagagatgtagcgaaagaaccaaccgcgccatcgatgtggtcaaagttggagtctttgtat 12936771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 5408640 - 5408548
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||| ||||||||||| ||| | || ||||||| |||||| |||||||||| ||||||||||||||| ||||||    
T  5408640 gccattgtcttgtgcctcggggacaaagttttgagggatgtcgcgaaggaactaaccgcgacatcgatgtggtcaaagttggagtcgttgtat 5408548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 5412965 - 5412873
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||| ||||||||||| ||| | || ||||||| |||||| |||||||||| ||||||||||||||| ||||||    
T  5412965 gccattgtcttgtgcctcggggacaaagttttgagggatgtcgcgaaggaactaaccgcgacatcgatgtggtcaaagttggagtcgttgtat 5412873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 25463079 - 25462987
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| || ||||||| |||  |||||||||||| ||||||  |||||||||||    
T  25463079 gccattgtcttgtgcctcggggataaagttttgagagatgtagcgaaagaaccaaacgcggcatcgatgtagttaaagttatagtctttgtat 25462987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 26068057 - 26067917
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| || ||||||||||| |||||||||||| |||||||         ||| |||||||||||||||||||||||||| |||  |||||||||||     
T  26068057 accatgtcacgagcggagaagaccgagatggtggacaaggccaggagtgtcgttgtcttgtgcctcggggataaagttttgatagaagtagcaaaggaag 26067958  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||||| | |||||||||| |||||||||    
T  26067957 caaccgcggcatcgatgtgggcaaagttggaatctttgtat 26067917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 12157868 - 12158008
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggc---------cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| |||||         ||||| ||| ||||||||||| ||||||||| | ||| | || |||||||    
T  12157868 accatgtcacaagcggagaagaccgagatggtggacaaggctaggagtgacattgtcttatgcctcggggaaaaagttttgggggatgtcgctaaggaac 12157967  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||| ||| |||||||||| ||||||||||||||| ||||||    
T  12157968 caaacgcgacatcgatgtggtcaaagttggagtcattgtat 12158008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 26932225 - 26932085
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| || ||||||||||| |||||||||||| |||||||         ||| ||||||||||||||||||||||||||||||  |||||||||||     
T  26932225 accatgtcacgagcggagaagaccgagatggtggacaaggccaggagtgccgttgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaag 26932126  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||| ||| | |||||||| | |||||||||    
T  26932125 caaccgcggcatcgttgtgggcaaagttgaaatctttgtat 26932085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 3395070 - 3395153
Alignment:
Q  135 ttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||||  |||||||||   |||||||||| |||||||||    
T  3395070 ttgtgcctcggggataaagttttgagagaagtggcaaaggaaccaaccgccgcatcgatgtgtgcaaagttggaatctttgtat 3395153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 26944190 - 26944281
Alignment:
Q  127 ccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||| ||||||||||||  ||||||||||||||||| |||| ||||||||||||||  ||||||||| ||||||||| || | |||||||    
T  26944190 ccattgtcttgtgcctcggaaataaagttttgagagatatagcgaaggaaccaaccgcgccatcgatgtggtcaaagttcgaatatttgtat 26944281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 12911170 - 12911092
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttg 206  Q
    ||||| |||||||||| |||||||||||||||||||| |||| || |||||||||||  ||||||||| ||||||||||    
T  12911170 cattgtcttgtgcctcagggataaagttttgagagatgtagcgaaagaaccaaccgcgccatcgatgtggtcaaagttg 12911092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 3631555 - 3631465
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||| |||||||||||||||||||||||||||| |  |||| |||||| | |||||| ||||||||| | ||||||||||  ||||||||    
T  3631555 cattgtcttgtgcctcggggataaagttttgagaaaagtagcgaaggaatccaccgcagcatcgatgtggccaaagttggaagctttgtat 3631465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 30443909 - 30444050
Alignment:
Q  86 aaccatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaa 176  Q
    |||||||| |||||||||||||| | |||||||||| |||||||         ||| ||| ||  ||||||| ||| ||||||||||| |||| ||||||    
T  30443909 aaccatgtcacaagcggagaagagcaagatggtggacaaggccagaagtgtttttgtcttatggttcggggacaaaattttgagagatatagcgaaggaa 30444008  T
Q  177 ccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||| |  ||||||||| ||||||||||||||| ||||||    
T  30444009 ccaaccacggcatcgatgtggtcaaagttggagtcgttgtat 30444050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 16553273 - 16553365
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||| ||||||||||| ||| | || ||||||||||||||  ||||||| | ||| |||||||| || ||||||    
T  16553273 gccattgtcttgtgcctcggggacaaagttttgagggatgtcgcgaaggaaccaaccgcggcatcgatatggtctaagttggaatcgttgtat 16553365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 16629829 - 16629921
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||| ||||||||||| ||| | || ||||||||||||||  ||||||| | ||| |||||||| || ||||||    
T  16629829 gccattgtcttgtgcctcggggacaaagttttgagggatgtcgcgaaggaaccaaccgcggcatcgatatggtctaagttggaatcgttgtat 16629921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 11137236 - 11137291
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaac 181  Q
    ||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  11137236 gccattgtcttgtgcctcagggataaagttttgagagatgtagcaaaggaaacaac 11137291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 17012731 - 17012820
Alignment:
Q  129 attgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||| ||||||||||| | || |||||||||| ||  |||||||||||||||| || |||||||||| ||||||||| || | |||||||    
T  17012731 attgtcttgtgcctcgagaattaagttttgagggaagtagcaaaggaaccaactgcgacatcgatgtggtcaaagttcgaatatttgtat 17012820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 15534176 - 15534124
Alignment:
Q  166 tagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||||||||||||||| |||||||||| ||||||||| || | |||||||    
T  15534176 tagcaaaggaaccaaccgcgacatcgatgtggtcaaagttcgaatatttgtat 15534124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 34165481 - 34165573
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| | ||||||||||||| ||||||||||| ||| | || ||||||||||| ||  ||||||| | ||| |||||||| || ||||||    
T  34165481 gccattgtcctgtgcctcggggacaaagttttgagggatgtcgcgaaggaaccaactgcggcatcgatatggtctaagttggaatcgttgtat 34165573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1899 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold1899
Description:

Target: scaffold1899; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 289 - 381
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| ||||||||||||||||||||||||||||||  ||||||||||| ||||||   ||||||||| | |||||||||| |||||||||    
T  289 gccattgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaagcaaccgtggcatcgatgtgggcaaagttggaatctttgtat 381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 22743 - 22883
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaac 177  Q
    ||||||| |||||||||||||| |||||||||||| ||||||          ||| ||||||||||||||||||||||||||||||  |||||||||||     
T  22743 accatgtcacaagcggagaagaccgagatggtggacaaggcccggagtgccgttgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaag 22842  T
Q  178 caaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||  ||||||| | | |||||||||| |||||||||    
T  22843 caaccgcggcatcgatatgggcaaagttggaatctttgtat 22883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 73131 - 73039
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||||||||||| |||||||||||||||||  |||||||||||| ||| ||  |||| |||| | |||||||||| |||||||||    
T  73131 gccattgtcttgtgcctcggagataaagttttgagagaagtagcaaaggaacgaactgcggcatctatgtgggcaaagttggaatctttgtat 73039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 176
Target Start/End: Complemental strand, 12537 - 12439
Alignment:
Q  87 accatgttacaagcggagaagatcgagatggtggataaggcca---------ttgacttgtgcctcggggataaagttttgagagatttagcaaaggaa 176  Q
    ||||||| |||||||||||||| |||||||||||| |||||||         ||| ||||||||||||||||||||||||||||||  |||||||||||    
T  12537 accatgtcacaagcggagaagaccgagatggtggacaaggccaggagtgccgttgtcttgtgcctcggggataaagttttgagagaagtagcaaaggaa 12439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 80533 - 80623
Alignment:
Q  128 cattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||| ||||||||||||| ||||||||| ||||||  ||||||||||| |||||||  ||||||||| ||||||||| || | |||||||    
T  80533 cattgtcttgtgcctcgggaataaagtttagagagaagtagcaaaggaaacaaccgcgccatcgatgtggtcaaagttcgaatatttgtat 80623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 115200 - 115292
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    ||||||| |||||||||||| || ||||||||||| ||| | || ||||||||||||||  |||||| || |||||||||| |||| ||||||    
T  115200 gccattgtcttgtgcctcggtgacaaagttttgagcgatgtcgcgaaggaaccaaccgcggcatcgacgtggtcaaagttgtagtcattgtat 115292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 26501 - 26412
Alignment:
Q  129 attgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||| ||||||||||| | || |||||||||| ||  |||||||||||||||| || |||||||||| ||||||||| || | |||||||    
T  26501 attgtcttgtgcctcgagaattaagttttgagggaagtagcaaaggaaccaactgcgacatcgatgtggtcaaagttcgaatatttgtat 26412  T

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Target: scaffold0011 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 34223 - 34307
Alignment:
Q  134 cttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaagttggagtctttgtat 218  Q
    |||||||||||| ||||||||||| |||||  ||||||||||| ||||  |  ||||||||| | |||||||||| |||||||||    
T  34223 cttgtgcctcggagataaagttttaagagaagtagcaaaggaaacaacaacggcatcgatgtgggcaaagttggaatctttgtat 34307  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 50683 - 50760
Alignment:
Q  126 gccattgacttgtgcctcggggataaagttttgagagatttagcaaaggaaccaaccgcaacatcgatgtagtcaaag 203  Q
    ||||||| ||||  ||||||||||||||||||||||||  ||||||| ||  | |||||  ||||||||| |||||||    
T  50683 gccattgtcttgctcctcggggataaagttttgagagaagtagcaaaagatactaccgcggcatcgatgtggtcaaag 50760  T

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