View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20760_low_28 (Length: 227)

Name: NF20760_low_28
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20760_low_28
NF20760_low_28
[»] chr2 (2 HSPs)
chr2 (15-174)||(40927230-40927389)
chr2 (15-163)||(9612552-9612700)
[»] chr1 (1 HSPs)
chr1 (100-221)||(48506622-48506741)
[»] chr4 (1 HSPs)
chr4 (15-81)||(31978646-31978712)
[»] chr3 (1 HSPs)
chr3 (15-89)||(41073449-41073523)
[»] chr7 (1 HSPs)
chr7 (15-88)||(29915610-29915683)
[»] chr6 (1 HSPs)
chr6 (16-89)||(31393192-31393265)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 40927230 - 40927389
Alignment:
Q  15 tcaataacattattgacggaataatccctcgataatacagataattatgttattgacggataaatccttcagtaaagtctttgacaaatctcccttgcat 114  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40927230 tcaataacattattgacgaaataatccttcgataatacagataattacgttattgacggataaatccttcagtaaagtctttgacaaatctcccttgcat 40927329  T
Q  115 cactaacggatcatttccgtcaataatgatggtgcatgacagctgcacatggcatcgtat 174  Q
     ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40927330 tactgacggatcatttccgtcaataatgatggtgcataacagctgcacatggcatcgtat 40927389  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 9612552 - 9612700
Alignment:
Q  15 tcaataacattattgacggaataatccctcgataatacagataattatgttattgacggataaatccttcagtaaagtctttgacaaatctcccttgcat 114  Q
    |||||||||||| ||||||||||| ||||| ||| ||||||||| | ||||| ||||||||||||||  |||||||||| ||||| |||||||||||  |    
T  9612552 tcaataacattactgacggaataaaccctcaatagtacagataaatctgttactgacggataaatccgccagtaaagtcattgacgaatctcccttgtgt 9612651  T
Q  115 cactaacggatcatttccgtcaataatgatggtgcatgacagctgcaca 163  Q
     ||| ||||||   |||||||||||||||||||| | ||||||||||||    
T  9612652 tactgacggatttgttccgtcaataatgatggtgtaggacagctgcaca 9612700  T

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Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 100 - 221
Target Start/End: Complemental strand, 48506741 - 48506622
Alignment:
Q  100 aaatctcccttgcatcactaacggatcatttccgtcaataatgatggtgcatgacagctgcacatggcatcgtattattggcggatgaaatctgttagta 199  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  48506741 aaatctctcttacatcactgacggatcatttccgtcaataatgatggtgcatgacagctgcacatggcatcgtattactggcggatgaaatctgtcagta 48506642  T
Q  200 ataaaataaacaatccgccagt 221  Q
    ||  |||||||||| |||||||    
T  48506641 at--aataaacaattcgccagt 48506622  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 31978646 - 31978712
Alignment:
Q  15 tcaataacattattgacggaataatccctcgataatacagataattatgttattgacggataaatcc 81  Q
    |||||||||||| ||||||||||| ||||| ||||| ||| | ||||  ||| ||||||||||||||    
T  31978646 tcaataacattactgacggaataaaccctcaataattcagttgattacattactgacggataaatcc 31978712  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 41073449 - 41073523
Alignment:
Q  15 tcaataacattattgacggaataatccctcgataatacagataattatgttattgacggataaatccttcagtaa 89  Q
    |||||||| ||| |||||||| |||||||| ||||| |||| | |||  ||| |||||||||||||| |||||||    
T  41073449 tcaataacgttactgacggaacaatccctcaataattcagagagttacattactgacggataaatccgtcagtaa 41073523  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 29915683 - 29915610
Alignment:
Q  15 tcaataacattattgacggaataatccctcgataatacagataattatgttattgacggataaatccttcagta 88  Q
    |||||||||||| ||||||||||| ||||| |||||  || | ||||  ||| |||||||||||||| ||||||    
T  29915683 tcaataacattactgacggaataaaccctcaataatttagttgattacattactgacggataaatccatcagta 29915610  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 31393265 - 31393192
Alignment:
Q  16 caataacattattgacggaataatccctcgataatacagataattatgttattgacggataaatccttcagtaa 89  Q
    ||||||| ||| |||||||| |||||||| ||||| |||| | |||  ||| |||||||||||||| |||||||    
T  31393265 caataacgttactgacggaacaatccctcaataattcagagagttacattactgacggataaatccgtcagtaa 31393192  T

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