View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20760_low_3 (Length: 624)

Name: NF20760_low_3
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20760_low_3
NF20760_low_3
[»] chr4 (5 HSPs)
chr4 (259-508)||(12047206-12047447)
chr4 (11-107)||(12047591-12047687)
chr4 (120-153)||(12047540-12047573)
chr4 (320-369)||(16073466-16073515)
chr4 (320-372)||(18513170-18513222)
[»] chr1 (2 HSPs)
chr1 (320-366)||(40258874-40258920)
chr1 (321-369)||(21365990-21366038)
[»] scaffold0168 (1 HSPs)
scaffold0168 (333-370)||(21244-21281)
[»] chr3 (1 HSPs)
chr3 (320-369)||(40993273-40993322)
[»] chr2 (1 HSPs)
chr2 (321-370)||(29176365-29176414)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 3e-99; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 259 - 508
Target Start/End: Complemental strand, 12047447 - 12047206
Alignment:
Q  259 agacactgttaataatttgagaaatctttttattcagtgtaagtatatgtgtgggaaacacgtccgacaccaaaacacgcctaatccgaggagcatccat 358  Q
    |||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12047447 agacaccgttaataatttgagaaatcttataattcagtgtaattatatgtgtgggaaacgcgtccgacaccaaaacacgcctaatccgaggagcatccat 12047348  T
Q  359 gcttcataggttcaaattgaatttcataaaggnnnnnnnnnngcttactttattggtgataaggtgacattgagttcctttaccagaagcaggtgcaccg 458  Q
    |||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12047347 gcttcataggttcaaattgaatttcataaag--------aaaacttactttattggtgataaggtgacattgagttcctttaccagaagcaggtgcaccg 12047256  T
Q  459 gaaatcataacatgaagtggctcctcctccgtcttcgccaccgctttcac 508  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12047255 gaaatcataacatgaagtggctcctccaccgtcttcgccaccgctttcac 12047206  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 12047687 - 12047591
Alignment:
Q  11 cacagattagagtaagcatttatatatcttaaaccttaatgcatctttctatctagcacactaaactagagtaagcatagggtactcacaaaacaaa 107  Q
    |||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12047687 cacagattagagtaggcatctatatatcttaaaccttaatgcatctatctatctagcacactaaactaaagtaagcatagggtactcacaaaacaaa 12047591  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 12047573 - 12047540
Alignment:
Q  120 ctttaaacatgctaatgctgctaatcaataatac 153  Q
    ||||||||||||||||||||||||||||||||||    
T  12047573 ctttaaacatgctaatgctgctaatcaataatac 12047540  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 16073466 - 16073515
Alignment:
Q  320 gtccgacaccaaaacacgcctaatccgaggagcatccatgcttcataggt 369  Q
    ||||||||| || |||||||||||||||||||  ||||||||||||||||    
T  16073466 gtccgacactaagacacgcctaatccgaggagtgtccatgcttcataggt 16073515  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 18513222 - 18513170
Alignment:
Q  320 gtccgacaccaaaacacgcctaatccgaggagcatccatgcttcataggttca 372  Q
    |||||||||||  |||||||||||| ||||||  ||| |||||||||||||||    
T  18513222 gtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcataggttca 18513170  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 40258920 - 40258874
Alignment:
Q  320 gtccgacaccaaaacacgcctaatccgaggagcatccatgcttcata 366  Q
    |||||||||||  |||||||||||||||||||  |||||||||||||    
T  40258920 gtccgacaccaggacacgcctaatccgaggagtgtccatgcttcata 40258874  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 21366038 - 21365990
Alignment:
Q  321 tccgacaccaaaacacgcctaatccgaggagcatccatgcttcataggt 369  Q
    ||||||||| | |||||||||||||||||||  ||| ||||||||||||    
T  21366038 tccgacaccgagacacgcctaatccgaggagtgtccgtgcttcataggt 21365990  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 21244 - 21281
Alignment:
Q  333 acacgcctaatccgaggagcatccatgcttcataggtt 370  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  21244 acacgcctaatccgaggagtatccgtgcttcataggtt 21281  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 40993322 - 40993273
Alignment:
Q  320 gtccgacaccaaaacacgcctaatccgaggagcatccatgcttcataggt 369  Q
    ||||||||||   |||||||||||||||||||  ||||||||||||||||    
T  40993322 gtccgacaccgggacacgcctaatccgaggagtgtccatgcttcataggt 40993273  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 370
Target Start/End: Complemental strand, 29176414 - 29176365
Alignment:
Q  321 tccgacaccaaaacacgcctaatccgaggagcatccatgcttcataggtt 370  Q
    ||||||||| |||||||||||||||||| ||  | |||||||||||||||    
T  29176414 tccgacaccgaaacacgcctaatccgagaagtgttcatgcttcataggtt 29176365  T

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