View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20760_low_30 (Length: 217)
Name: NF20760_low_30
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20760_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 16230308 - 16230493
Alignment:
| Q |
19 |
gagatcttgaaccaatgcacggattacctccacgcaagtcatccacaatctctgtatagtgctgttcttttggaacgggatcaagtgcgctgaaatacaa |
118 |
Q |
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| T |
16230308 |
gagatcctgaaccaatgcatggatcacctccacgcgagtcatccacaatctctgtatagttttgttcttttggaacaggatcaagtgcactgaaatacaa |
16230407 |
T |
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| Q |
119 |
gatttccaccatatccacatcacagcatactccaccaggctcctgaagaaaattgctactggtttgaaatccaggatgcaatatct |
204 |
Q |
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| T |
16230408 |
gatttccaccatatccacatcacaccatactccaccaggcccctgaagaaaattgccactggtttgaaatccaggatgcaatatct |
16230493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 34688162 - 34688261
Alignment:
| Q |
105 |
gcgctgaaatacaagatttccaccatatccacatcacagcatactccaccaggctcctgaagaaaattgctactggtttgaaatccaggatgcaatatct |
204 |
Q |
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| T |
34688162 |
gcgctgaaatacaagatttccaccatatccacatcacagcatactccaccaggctcctgaagaaaattgctcctggtttgaaatccaggatgcaatatct |
34688261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 34710574 - 34710673
Alignment:
| Q |
105 |
gcgctgaaatacaagatttccaccatatccacatcacagcatactccaccaggctcctgaagaaaattgctactggtttgaaatccaggatgcaatatct |
204 |
Q |
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| T |
34710574 |
gcgctgaaatacaagatttccaccatatccacatcacagcatactccaccaggctcctgaagaaaattgctcctggtttgaaatccaggatgcaatatct |
34710673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 28914031 - 28914176
Alignment:
| Q |
19 |
gagatcttgaaccaatgcacggattacctccacgcaagtcatccacaatctctgtatagtgctgttcttttggaacgggatcaagtgcgctgaaatacaa |
118 |
Q |
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| T |
28914031 |
gagatcctgaaccaatgcacggatcacctccacgcaagtcatccacaatctctgtatagtgttgttctttcggaactggttcaggtgcaccaaaatatga |
28914130 |
T |
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| Q |
119 |
gatttccaccatatccacatcacagcatactccaccaggctcctga |
164 |
Q |
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| T |
28914131 |
gaattccaccacatctacatcacaccatactccaccaggcccctga |
28914176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 34688099 - 34688167
Alignment:
| Q |
14 |
catcagagatcttgaaccaatgcacggattacctccacgcaagtcatccacaatctctgtatagtgctg |
82 |
Q |
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| T |
34688099 |
catctgagatcttgaaccaatgcacggattacctccacgcaagtcatccacaatctccgtatagcgctg |
34688167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 34710511 - 34710579
Alignment:
| Q |
14 |
catcagagatcttgaaccaatgcacggattacctccacgcaagtcatccacaatctctgtatagtgctg |
82 |
Q |
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| T |
34710511 |
catctgagatcttgaaccaatgcacggattacctccacgcaagtcatccacaatctccgtatagcgctg |
34710579 |
T |
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