View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20760_low_31 (Length: 214)
Name: NF20760_low_31
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20760_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 36774933 - 36774753
Alignment:
| Q |
16 |
aaaatagtaatcaacagtagaggtatagaacactcggggttggaaaaaagggttaggatggttataattaaattataatgcaaagtgttagaggaatggt |
115 |
Q |
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| T |
36774933 |
aaaatagtattcaacagtagaggtatagaacactaggggttggaaaaaagggttaggatggttataa----attataatgcaaagtgttagaggaatggt |
36774838 |
T |
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| Q |
116 |
tgtggttgattgatggtagtgaaagtagaagaaatgaggagtatttataaggtgccaaaaagctacttgacctgtatcaagatcc |
200 |
Q |
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| T |
36774837 |
tgtggttgattgaaggtagtgaaagtagaagaaatgaggagtatttataaggtgccaaaaagctacttgacctgtatcaagatcc |
36774753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 36795981 - 36795919
Alignment:
| Q |
101 |
tgttagaggaatggttgtggttgattgatggtagtgaaagtagaagaaatgaggagtatttat |
163 |
Q |
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| T |
36795981 |
tgttagaggaatggttgtgtttgattgatggtagtgaaagtaggagaaatgaggattatttat |
36795919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 36759629 - 36759556
Alignment:
| Q |
110 |
aatggttgtggttgattgatggtagtgaaagtagaagaaatgaggagtatttataaggtgccaaaaagctactt |
183 |
Q |
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| T |
36759629 |
aatggttgtagttgatggatggtagtgaaagagggagaagtgaggagtatttataaggtgccaaaaagctactt |
36759556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 36787644 - 36787595
Alignment:
| Q |
150 |
tgaggagtatttataaggtgccaaaaagctacttgacctgtatcaagatcc |
200 |
Q |
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| T |
36787644 |
tgaggattatttataaggtgcc-aaaagctacctgatctgtatcaagatcc |
36787595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 36787673 - 36787645
Alignment:
| Q |
104 |
tagaggaatggttgtggttgattgatggt |
132 |
Q |
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| T |
36787673 |
tagaggaatggttgtggttgattgatggt |
36787645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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