View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20760_low_4 (Length: 616)

Name: NF20760_low_4
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20760_low_4
NF20760_low_4
[»] chr2 (3 HSPs)
chr2 (298-473)||(4745217-4745392)
chr2 (20-113)||(4744965-4745058)
chr2 (187-230)||(4745098-4745141)
[»] chr6 (1 HSPs)
chr6 (511-605)||(28963075-28963169)
[»] chr8 (2 HSPs)
chr8 (512-605)||(3442750-3442843)
chr8 (517-605)||(24115842-24115931)
[»] chr4 (1 HSPs)
chr4 (512-589)||(26683799-26683875)


Alignment Details
Target: chr2 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 298 - 473
Target Start/End: Original strand, 4745217 - 4745392
Alignment:
Q  298 atgttagttttatgtttcgtcttgtaacttggtaattgccaaatcaatgtttggagcttacatcccatattttaacctttgtaacttgctgattttgaaa 397  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||||| ||||||| || |||||||||| ||||||||| ||| ||  || ||||| | |    
T  4745217 atgttggttttatgtttcggcttgtaacttggtaatcgccaaatcaaagtttggacctcacatcccatactttaaccttcgtagctgactaattttcata 4745316  T
Q  398 ctcaaacgattgcacaatttctgtgatgggcagagagataagtgagtagtaaatgaagtttagaacaattttaaag 473  Q
    ||  ||| |||||||||||| | |||| ||||||||||| |||| ||||||| |||||||| |||||| |||||||    
T  4745317 ctttaacaattgcacaatttatatgattggcagagagatgagtgggtagtaagtgaagtttggaacaactttaaag 4745392  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 4744965 - 4745058
Alignment:
Q  20 tgttaagggaaagtggtgaacctcggggtcaatgtggcattgctgcacatgcttcttatcccaccatataatatttttatacgaatttcacaat 113  Q
    |||| |||||||||||||||||  | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4744965 tgttgagggaaagtggtgaaccaggaggtcaatgtggcattgctgcacatgcttcttatcccatcatataatatttttatacgaatttcacaat 4745058  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 4745098 - 4745141
Alignment:
Q  187 ttcttcgtgttcgtgcttatattgtattgaaattctgcctatat 230  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||    
T  4745098 ttcttcgtattcgtgcttatattgtactgaaattctgcttatat 4745141  T

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Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 511 - 605
Target Start/End: Original strand, 28963075 - 28963169
Alignment:
Q  511 agaaaaatgctttatggtacgagagcaaaccatgcacgacaacttaagaatgaattgctgctcttgaatttttatctttcttttaactaattcat 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||| ||||||||||||| ||||||||||||||    
T  28963075 agaaaaatgctttatggtacgagagcaaaccatgcacgacaacttaggaatgaattgctgaccttggatttttatctttcctttaactaattcat 28963169  T

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Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 512 - 605
Target Start/End: Complemental strand, 3442843 - 3442750
Alignment:
Q  512 gaaaaatgctttatggtacgagagcaaaccatgcacgacaacttaagaatgaattgctgctcttgaatttttatctttcttttaactaattcat 605  Q
    |||||||||||||| | |||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||||||||  |||||||||||||    
T  3442843 gaaaaatgctttattgcacgagaacaaaccatgcacgacaacttacgaatgaattgctgcccttggatttttatctttccattaactaattcat 3442750  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 517 - 605
Target Start/End: Complemental strand, 24115931 - 24115842
Alignment:
Q  517 atgctttatggtacgagagcaaacc-atgcacgacaacttaagaatgaattgctgctcttgaatttttatctttcttttaactaattcat 605  Q
    |||||||||||||||||| |||||| ||||||||||||||  |||||||||||| | |||| ||||||||||||| ||||| ||||||||    
T  24115931 atgctttatggtacgagaacaaacccatgcacgacaacttgcgaatgaattgcttcccttggatttttatctttcatttaattaattcat 24115842  T

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Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 512 - 589
Target Start/End: Complemental strand, 26683875 - 26683799
Alignment:
Q  512 gaaaaatgctttatggtacgagagcaaaccatgcacgacaacttaagaatgaattgctgctcttgaatttttatcttt 589  Q
    ||||||||||||||||||| ||||||||||||||||||||||||   |||||| ||| || |||||||||||||||||    
T  26683875 gaaaaatgctttatggtacaagagcaaaccatgcacgacaacttgcaaatgaa-tgccgcccttgaatttttatcttt 26683799  T

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