View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20760_low_5 (Length: 518)

Name: NF20760_low_5
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20760_low_5
NF20760_low_5
[»] chr6 (16 HSPs)
chr6 (16-511)||(34898457-34898950)
chr6 (250-361)||(1485125-1485235)
chr6 (290-410)||(34620921-34621041)
chr6 (290-410)||(34748358-34748478)
chr6 (297-411)||(882728-882842)
chr6 (290-398)||(34027359-34027467)
chr6 (290-361)||(31305826-31305897)
chr6 (290-334)||(2234550-2234595)
chr6 (250-328)||(30926790-30926868)
chr6 (294-398)||(25388116-25388219)
chr6 (290-361)||(4910943-4911014)
chr6 (324-413)||(434163-434253)
chr6 (366-420)||(19601372-19601426)
chr6 (366-408)||(34026417-34026459)
chr6 (290-346)||(852567-852623)
chr6 (290-350)||(17225887-17225947)
[»] chr7 (11 HSPs)
chr7 (250-422)||(27571858-27572029)
chr7 (250-408)||(38123598-38123755)
chr7 (290-413)||(45557400-45557523)
chr7 (292-420)||(40561678-40561806)
chr7 (310-420)||(33853404-33853514)
chr7 (290-414)||(22310385-22310509)
chr7 (294-360)||(40795969-40796035)
chr7 (294-398)||(12306760-12306866)
chr7 (292-361)||(41788353-41788422)
chr7 (391-420)||(45823307-45823336)
chr7 (290-398)||(40491613-40491721)
[»] chr4 (12 HSPs)
chr4 (307-422)||(33843763-33843878)
chr4 (290-361)||(55927749-55927820)
chr4 (290-336)||(4243422-4243468)
chr4 (290-330)||(33844012-33844052)
chr4 (290-361)||(8604601-8604672)
chr4 (366-417)||(48045675-48045726)
chr4 (290-336)||(2207114-2207160)
chr4 (290-356)||(32818354-32818420)
chr4 (315-360)||(25319108-25319153)
chr4 (299-336)||(32100336-32100373)
chr4 (290-350)||(10185229-10185289)
chr4 (291-350)||(16551993-16552050)
[»] chr2 (11 HSPs)
chr2 (290-416)||(1976788-1976916)
chr2 (290-361)||(44439289-44439360)
chr2 (315-361)||(15220840-15220886)
chr2 (290-361)||(16013683-16013760)
chr2 (292-362)||(37420171-37420243)
chr2 (256-350)||(42982546-42982639)
chr2 (391-429)||(11650668-11650706)
chr2 (290-336)||(42741012-42741058)
chr2 (317-362)||(40401621-40401666)
chr2 (376-420)||(3476349-3476393)
chr2 (317-361)||(4908852-4908896)
[»] scaffold0361 (1 HSPs)
scaffold0361 (290-361)||(14093-14164)
[»] chr3 (15 HSPs)
chr3 (294-418)||(36302222-36302348)
chr3 (290-415)||(46853459-46853584)
chr3 (259-336)||(30301002-30301079)
chr3 (290-429)||(51285605-51285744)
chr3 (250-358)||(40147832-40147939)
chr3 (250-336)||(35058357-35058443)
chr3 (290-359)||(35264392-35264461)
chr3 (257-361)||(27266773-27266876)
chr3 (290-356)||(31708223-31708289)
chr3 (315-416)||(5406964-5407061)
chr3 (290-349)||(37335025-37335084)
chr3 (297-416)||(40136096-40136214)
chr3 (290-400)||(3776557-3776667)
chr3 (291-361)||(35253446-35253516)
chr3 (300-361)||(29475364-29475425)
[»] chr1 (21 HSPs)
chr1 (256-361)||(48548993-48549095)
chr1 (300-415)||(1233350-1233465)
chr1 (294-336)||(28287340-28287382)
chr1 (290-355)||(213522-213587)
chr1 (297-362)||(1514385-1514450)
chr1 (319-420)||(6932104-6932205)
chr1 (250-336)||(8381962-8382047)
chr1 (292-336)||(20026168-20026212)
chr1 (292-336)||(24587949-24587993)
chr1 (298-362)||(52263625-52263689)
chr1 (290-361)||(4458421-4458492)
chr1 (290-361)||(34915101-34915172)
chr1 (290-336)||(7790646-7790692)
chr1 (290-335)||(47892393-47892438)
chr1 (290-358)||(3016197-3016265)
chr1 (290-350)||(10324928-10324988)
chr1 (290-330)||(17284131-17284171)
chr1 (290-361)||(30557539-30557608)
chr1 (294-346)||(30850393-30850445)
chr1 (324-388)||(35961437-35961501)
chr1 (293-349)||(52339719-52339775)
[»] chr8 (9 HSPs)
chr8 (294-399)||(16972005-16972110)
chr8 (294-361)||(32927931-32927998)
chr8 (290-361)||(35495295-35495366)
chr8 (290-336)||(13384658-13384704)
chr8 (290-361)||(32767422-32767495)
chr8 (369-415)||(38386430-38386476)
chr8 (319-419)||(2778577-2778677)
chr8 (290-398)||(26100088-26100196)
chr8 (392-420)||(43024963-43024991)
[»] chr5 (8 HSPs)
chr5 (290-415)||(15368508-15368632)
chr5 (293-361)||(8591519-8591587)
chr5 (309-396)||(35138967-35139054)
chr5 (290-360)||(36639972-36640042)
chr5 (300-337)||(7925431-7925468)
chr5 (375-420)||(9952555-9952600)
chr5 (291-335)||(9185020-9185064)
chr5 (315-359)||(37886019-37886063)


Alignment Details
Target: chr6 (Bit Score: 435; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 16 - 511
Target Start/End: Original strand, 34898457 - 34898950
Alignment:
Q  16 cagaaaacacttaacctcttgagaagatatactgcagacaccattgacagtgacttgagttctgagatcaatgaatgatctctccacaagtaaggctgcc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34898457 cagaaaacacttaacctcttgagaagatatactgcagacaccattgacggtgacttgagttctgagatcaatgaatgatctctccacaagtaaggctgcc 34898556  T
Q  116 atgtgcttttcttctggagacatagagagagatttttcaattgattcccaaggccaaatcttaataacacccccttcggaacctgaccagagatcaccta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34898557 atgtgcttttcttctggagacatagagagagatttttcaattgattcccaaggccaaatcttaataacacccccttcggaacctgaccagagatcaccta 34898656  T
Q  216 gacgaagaaacagtaagttagcaaataagtggtgagaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcga 315  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||||||||||||||||    
T  34898657 gacgaagaaacagtaaattagcaaataagtggtgagaatcgattctacttgaagctagaaattagagtttttttattctagaattgattttaacactcga 34898756  T
Q  316 atttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaatcaatttt 415  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  34898757 atttattgttcaactcactttaacacaaatgtatcg-aacataaattgtattaccttcgactcacttt-agccagaatcaattcaatcaaaatcaatttt 34898854  T
Q  416 tgtcaacgccaaacatacacttaattttgaaaagactactagagggagaggcctaccgtagctgcttatgatcatggcaagaacgggacctctgtg 511  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34898855 tgtcaacgccaaacatacacttaattttgaaaatactactagagggagaggcctaccgtagctgcttatgatcatggcaagaacgggacctctgtg 34898950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 361
Target Start/End: Complemental strand, 1485235 - 1485125
Alignment:
Q  250 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 349  Q
    ||||| ||||||||||||| |||||||||||||       |||||||||||||||||||||||| |||||||||||||||||||||| |||  | |||||    
T  1485235 agaattgattctacttgaatctagaaattggagcttttg-attctagaattgattttaacactcaaatttattgttcaactcacttttacataagtgtat 1485137  T
Q  350 cgaaacataaat 361  Q
    | |||| |||||    
T  1485136 ccaaacgtaaat 1485125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 410
Target Start/End: Original strand, 34620921 - 34621041
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 389  Q
    ||||||||||||||||| |||||  |||||||| ||||||||||||| |||  |||||||| ||||||||||    ||| |||| ||||| ||  |||||    
T  34620921 attctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactcaattctagcca 34621020  T
Q  390 gaatcaattcaatcaaaatca 410  Q
    ||||| ||||| |||||||||    
T  34621021 gaatccattcactcaaaatca 34621041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 410
Target Start/End: Original strand, 34748358 - 34748478
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 389  Q
    ||||||||||||||||| |||||  |||||||| ||||||||||||| |||  |||||||| ||||||||||    ||| |||| ||||| ||  |||||    
T  34748358 attctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactcaattctagcca 34748457  T
Q  390 gaatcaattcaatcaaaatca 410  Q
    ||||| ||||| |||||||||    
T  34748458 gaatccattcactcaaaatca 34748478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 297 - 411
Target Start/End: Original strand, 882728 - 882842
Alignment:
Q  297 aattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaa 396  Q
    |||||||||| ||| || ||||||||||| ||||||||||  || ||||||||| ||||||||||  | ||| |||| ||||| ||| | | ||||||||    
T  882728 aattgatttttacattcaaatttattgtttaactcacttttgcatgaatgtatccaaacataaatcattttaccttcaactcaattttaactagaatcaa 882827  T
Q  397 ttcaatcaaaatcaa 411  Q
    |||| ||||| ||||    
T  882828 ttcactcaaactcaa 882842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 398
Target Start/End: Complemental strand, 34027467 - 34027359
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 389  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||| | ||| |||| |||| || ||||||  || | |  ||| ||||||||| |||||    
T  34027467 attctagaattgatttttacactcaaatttattattcaactcactcttacatgaatatatctaaccataaaccgtctcactttcaactcacttttagcca 34027368  T
Q  390 gaatcaatt 398  Q
     ||||||||    
T  34027367 caatcaatt 34027359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 31305897 - 31305826
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    ||||||||||||||||  |||||| ||||||||| |||||||||||| |||  ||| |||| ||||||||||    
T  31305897 attctagaattgatttatacactcaaatttattgatcaactcacttttacattaatatatccaaacataaat 31305826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 2234550 - 2234595
Alignment:
Q  290 attctagaattgattttaacactcgaattta-ttgttcaactcact 334  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||    
T  2234550 attctagaattgattttaacactcaaatttatttgttcaactcact 2234595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 30926868 - 30926790
Alignment:
Q  250 agaatcgattcta-cttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaa 328  Q
    ||||| ||||||| ||||||||||||||||||||       ||||||||||||||||| |||||| ||||||||||||||    
T  30926868 agaatggattctaacttgaagctagaaattggagtttttt-attctagaattgatttttacactcaaatttattgttcaa 30926790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 398
Target Start/End: Original strand, 25388116 - 25388219
Alignment:
Q  294 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaat 393  Q
    ||||||||||||| |||||| ||||||||| |||||||||||| |||  ||| |||| |||  |||||  ||||| || | ||||| |||||| ||||||    
T  25388116 tagaattgattttgacactcaaatttattg-tcaactcacttttacataaatatatccaaatgtaaatcatattacctccaactcattttaagtcagaat 25388214  T
Q  394 caatt 398  Q
    |||||    
T  25388215 caatt 25388219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 4910943 - 4911014
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    ||||||||||||||||| |||  | ||||||| |||| ||||||||| |||  |||||||| ||||||||||    
T  4910943 attctagaattgattttcacatacaaatttatagttcgactcacttttacataaatgtatccaaacataaat 4911014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 413
Target Start/End: Complemental strand, 434253 - 434163
Alignment:
Q  324 ttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaa-tcaaaatcaatt 413  Q
    ||||||||||||| |||||||| |||| ||||| ||||  | ||| || | ||||||||| ||||| |||| |||||| ||||||||||||    
T  434253 ttcaactcacttttacacgaatatatccaaacacaaatcattttacctgcaactcacttttagccataatccattcaactcaaaatcaatt 434163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 420
Target Start/End: Complemental strand, 19601426 - 19601372
Alignment:
Q  366 ttatcttcgactcactttaagccagaatcaattcaatcaaaatcaatttttgtca 420  Q
    |||||||| ||||||| | ||  | ||||||||||||||||||||||||||||||    
T  19601426 ttatcttcaactcactattagttaaaatcaattcaatcaaaatcaatttttgtca 19601372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 408
Target Start/End: Complemental strand, 34026459 - 34026417
Alignment:
Q  366 ttatcttcgactcactttaagccagaatcaattcaatcaaaat 408  Q
    |||||||| ||||||||| |||||||||||||||| |||||||    
T  34026459 ttatcttcaactcacttttagccagaatcaattcactcaaaat 34026417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 852567 - 852623
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatg 346  Q
    ||||||||||||||||| |||| | ||| ||||||| |||||||||| ||| |||||    
T  852567 attctagaattgatttttacacccaaatgtattgtttaactcacttttacatgaatg 852623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 350
Target Start/End: Original strand, 17225887 - 17225947
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatc 350  Q
    ||||||||||||||||| |||  | ||||||| |||||||||| ||| ||| |||||||||    
T  17225887 attctagaattgatttttacatacaaatttatagttcaactcagttttacatgaatgtatc 17225947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 250 - 422
Target Start/End: Original strand, 27571858 - 27572029
Alignment:
Q  250 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 349  Q
    ||||| |||||||||||||| ||||||||||||       |||||||||||||||||||||||| | |||||| |||||||||| || |||  |||||||    
T  27571858 agaattgattctacttgaagttagaaattggagcttttg-attctagaattgattttaacactcaagtttattattcaactcacatttacataaatgtat 27571956  T
Q  350 cgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaatcaatttttgtcaac 422  Q
    | || |||||||  | ||| |||  ||||||||| ||||| ||||||||||  ||||||||||||||||||||    
T  27571957 ccaaccataaatcattttacctttaactcacttttagccataatcaattcacccaaaatcaatttttgtcaac 27572029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 408
Target Start/End: Complemental strand, 38123755 - 38123598
Alignment:
Q  250 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 349  Q
    ||||| |||||||||||||||||||||||| ||       ||||||||||||||||| |||||| ||||||||| |||||||||||| ||| |||||| |    
T  38123755 agaattgattctacttgaagctagaaattgtagcttcta-attctagaattgatttttacactcaaatttattggtcaactcacttttacatgaatgtgt 38123657  T
Q  350 cgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaat 408  Q
    |  |||| |||||   ||| |||| ||||| ||| || || |||||||| | |||||||    
T  38123656 ccgaacacaaattactttaccttcaactcaattttagtcataatcaatttactcaaaat 38123598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 290 - 413
Target Start/End: Original strand, 45557400 - 45557523
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 389  Q
    ||||||| ||||||||| |||| | ||||| | | |||||||||||| ||| ||||||||| ||||| ||||    ||| |||| ||||||||| || ||    
T  45557400 attctaggattgatttttacacacaaatttgtagctcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttagtca 45557499  T
Q  390 gaatcaattcaatcaaaatcaatt 413  Q
    ||||||||||| ||||||||||||    
T  45557500 gaatcaattcattcaaaatcaatt 45557523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 420
Target Start/End: Complemental strand, 40561806 - 40561678
Alignment:
Q  292 tctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccaga 391  Q
    ||||||||| ||||  |||||| ||| |||||||||||||||||| ||| ||||||||| ||||||||||    |||  ||| ||||| |||   | |||    
T  40561806 tctagaattaatttatacactcaaatatattgttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaatttttactaga 40561707  T
Q  392 atcaattcaatcaaaatcaatttttgtca 420  Q
    ||||||||| |||||||||| ||||||||    
T  40561706 atcaattcactcaaaatcaacttttgtca 40561678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 310 - 420
Target Start/End: Complemental strand, 33853514 - 33853404
Alignment:
Q  310 actcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaatc 409  Q
    |||| |||||||||| || ||  |||| ||| ||||||||| ||||||||||    ||| |||| ||||||| | |||||||||||||||| | ||||||    
T  33853514 actcaaatttattgtccagcttgcttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatc 33853415  T
Q  410 aatttttgtca 420  Q
    |||||||||||    
T  33853414 aatttttgtca 33853404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 414
Target Start/End: Complemental strand, 22310509 - 22310385
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 389  Q
    ||||||||||| ||||| |||||  |||||||| ||||| ||||||| ||  ||||||||| ||||||||||  | |||||||| ||||| |||   |||    
T  22310509 attctagaattaatttttacacttaaatttatttttcaattcacttttacgagaatgtatccaaacataaatctttttatcttcaactcaatttttacca 22310410  T
Q  390 gaatcaattcaatcaaaatcaattt 414  Q
     | ||||| || |||||||||||||    
T  22310409 aactcaatccactcaaaatcaattt 22310385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 40796035 - 40795969
Alignment:
Q  294 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaa 360  Q
    |||||||||||||||||||| |||||| | ||||| ||||||| ||| ||||||||| || ||||||    
T  40796035 tagaattgattttaacactcaaatttactattcaaatcacttttacatgaatgtatccaatcataaa 40795969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 398
Target Start/End: Original strand, 12306760 - 12306866
Alignment:
Q  294 tagaattgattttaacactcgaattta--ttgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccaga 391  Q
    ||||||||||||| |||||| |||| |   | ||||||||||||| ||| |||| || | ||||||||||    |||||||| ||||||||| |||||||    
T  12306760 tagaattgatttttacactcaaattcactatattcaactcacttttacatgaatctagccaaacataaatcactttatcttcaactcacttttagccaga 12306859  T
Q  392 atcaatt 398  Q
    |||||||    
T  12306860 atcaatt 12306866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 41788353 - 41788422
Alignment:
Q  292 tctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    |||| ||||||||||||||||| |||||  ||||||||||||||| | |  |||||||  ||||||||||    
T  41788353 tctataattgattttaacactcaaatttgctgttcaactcacttttatattaatgtatacaaacataaat 41788422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 420
Target Start/End: Original strand, 45823307 - 45823336
Alignment:
Q  391 aatcaattcaatcaaaatcaatttttgtca 420  Q
    ||||||||||||||||||||||||||||||    
T  45823307 aatcaattcaatcaaaatcaatttttgtca 45823336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 398
Target Start/End: Original strand, 40491613 - 40491721
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 389  Q
    ||||||||||||| ||| |||| | ||||||  ||| |||||||||| ||| ||||||||| ||| ||||||    ||| |||| ||||||||| || ||    
T  40491613 attctagaattgacttttacacacaaatttaaagtttaactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagtca 40491712  T
Q  390 gaatcaatt 398  Q
     ||||||||    
T  40491713 aaatcaatt 40491721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 422
Target Start/End: Original strand, 33843763 - 33843878
Alignment:
Q  307 aacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaa 406  Q
    |||||||||||||||||||||||||||| | ||| |||| |||| ||||||||||    |||  | | ||||||||| ||||||||||||||||||||||    
T  33843763 aacactcgaatttattgttcaactcactattacatgaatatatccaaacataaatcactttacatccaactcacttttagccagaatcaattcaatcaaa 33843862  T
Q  407 atcaatttttgtcaac 422  Q
    ||||||||||||||||    
T  33843863 atcaatttttgtcaac 33843878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 55927820 - 55927749
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    ||||||||||||||  | |||||| |||||||||||||| ||||||| ||| ||||||||| ||||||||||    
T  55927820 attctagaattgatcgtcacactcaaatttattgttcaagtcacttttacatgaatgtatccaaacataaat 55927749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 4243422 - 4243468
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcacttt 336  Q
    ||||||||||||||||| |||||| |||||||||||| |||||||||    
T  4243422 attctagaattgatttttacactcaaatttattgttctactcacttt 4243468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 33844012 - 33844052
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaact 330  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  33844012 attctaaaattgattttaacactcaaatttattgttcaact 33844052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 8604672 - 8604601
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    ||||||||||||||||| |||| | ||||||| ||| ||  |||||| ||| ||||||||| ||||||||||    
T  8604672 attctagaattgattttcacacacaaatttatagttgaatgcacttttacatgaatgtatccaaacataaat 8604601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 417
Target Start/End: Complemental strand, 48045726 - 48045675
Alignment:
Q  366 ttatcttcgactcactttaagccagaatcaattcaatcaaaatcaatttttg 417  Q
    |||||||| ||||| ||| |||||||||||||| | ||||||||||||||||    
T  48045726 ttatcttcaactcagttttagccagaatcaatttactcaaaatcaatttttg 48045675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 2207114 - 2207160
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcacttt 336  Q
    |||||| ||||||||| ||||||| ||||||| ||||||||||||||    
T  2207114 attctataattgatttcaacactccaatttatggttcaactcacttt 2207160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 32818420 - 32818354
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaaca 356  Q
    |||||||||||||||||  ||| | ||||||| |||||||| ||||| ||| ||||||||| |||||    
T  32818420 attctagaattgatttttgcacacaaatttatagttcaactaacttttacatgaatgtatccaaaca 32818354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 25319108 - 25319153
Alignment:
Q  315 aatttattgttcaactcactttaacacgaatgtatcgaaacataaa 360  Q
    |||||||||||||||||||||| ||   ||||||||||||||||||    
T  25319108 aatttattgttcaactcacttttacgtaaatgtatcgaaacataaa 25319153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 32100336 - 32100373
Alignment:
Q  299 ttgattttaacactcgaatttattgttcaactcacttt 336  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  32100336 ttgatttttacactcaaatttattgttcaactcacttt 32100373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 350
Target Start/End: Original strand, 10185229 - 10185289
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatc 350  Q
    |||||| ||||||| || |||||| ||||||||||| |||||||||| |||  ||||||||    
T  10185229 attctaaaattgatctttacactcaaatttattgtttaactcacttttacattaatgtatc 10185289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 16551993 - 16552050
Alignment:
Q  291 ttctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatc 350  Q
    |||||||||||||||| ||||   ||||||| |||||||||||||| ||| |||||||||    
T  16551993 ttctagaattgattttcacaca--aatttatagttcaactcacttttacatgaatgtatc 16552050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 416
Target Start/End: Complemental strand, 1976916 - 1976788
Alignment:
Q  290 attctagaattgatttta--acactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagc 387  Q
    |||||||||||||||||   |||||| ||||||||||| |||||||||| ||| ||||||||| |||||||| | |  ||| |||| ||||| ||  |||    
T  1976916 attctagaattgatttttttacactcaaatttattgttgaactcacttttacatgaatgtatccaaacataagtcgctttaccttcaactcaattctagc 1976817  T
Q  388 cagaatcaattcaatcaaaatcaattttt 416  Q
    ||||||||||||| |||||| ||||||||    
T  1976816 cagaatcaattcactcaaaaacaattttt 1976788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 44439289 - 44439360
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||| |||  ||  |||| ||||||||||    
T  44439289 attctaaaattgattttaacactcaaatttattgttcaactcacttttacataaacatatccaaacataaat 44439360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 315 - 361
Target Start/End: Complemental strand, 15220886 - 15220840
Alignment:
Q  315 aatttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  15220886 aatttattgttcaactcactttaacatgaatgtatccaaacataaat 15220840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 16013760 - 16013683
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcacttta------acacgaatgtatcgaaacataaat 361  Q
    ||||||||| ||||||| |||||| ||||||||| |||||||||||||      ||||||||||||| ||||||||||    
T  16013760 attctagaaatgatttttacactcaaatttattggtcaactcactttacagtttacacgaatgtatccaaacataaat 16013683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 37420243 - 37420171
Alignment:
Q  292 tctagaattgattttaacactcgaatttattgttcaactcactttaac--acgaatgtatcgaaacataaatt 362  Q
    ||||||||||||||| |||||| |||||||| ||||||||||||| ||  ||| || ||| ||||||||||||    
T  37420243 tctagaattgatttttacactcaaatttattattcaactcacttttacttacgtatatattgaaacataaatt 37420171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 350
Target Start/End: Original strand, 42982546 - 42982639
Alignment:
Q  256 gattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatc 350  Q
    |||||||||||||||||||||||| ||       |||| |||||||||||| |||| | |||||||| | ||||||||||| ||| |||||||||    
T  42982546 gattctacttgaagctagaaattgtagcttttg-attccagaattgatttttacacacaaatttattttacaactcacttttacatgaatgtatc 42982639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 429
Target Start/End: Complemental strand, 11650706 - 11650668
Alignment:
Q  391 aatcaattcaatcaaaatcaatttttgtcaacgccaaac 429  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  11650706 aatcaattcactcaaaatcaatttttgtcaacgcaaaac 11650668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 42741012 - 42741058
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcacttt 336  Q
    ||||||||||||||||| |||||| |||||| ||| |||||||||||    
T  42741012 attctagaattgatttttacactcaaatttactgtccaactcacttt 42741058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 40401666 - 40401621
Alignment:
Q  317 tttattgttcaactcactttaacacgaatgtatcgaaacataaatt 362  Q
    |||||||||||||| ||||| ||| ||||||||| |||||||||||    
T  40401666 tttattgttcaactgacttttacatgaatgtatccaaacataaatt 40401621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 3476393 - 3476349
Alignment:
Q  376 ctcactttaagccagaatcaattcaatcaaaatcaatttttgtca 420  Q
    |||||||| | |||||||||||||| | |||||||||||||||||    
T  3476393 ctcacttttatccagaatcaattcacttaaaatcaatttttgtca 3476349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 4908852 - 4908896
Alignment:
Q  317 tttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    ||||||||||||  |||||||||| ||||||||| ||||||||||    
T  4908852 tttattgttcaatccactttaacatgaatgtatccaaacataaat 4908896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 14164 - 14093
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||| ||| ||||||||| ||||||||||    
T  14164 attctagaattgatttttacactcaaatttatttttcaactcactttcacatgaatgtatccaaacataaat 14093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 418
Target Start/End: Original strand, 36302222 - 36302348
Alignment:
Q  294 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat--tgtattatcttcgactcactttaagccaga 391  Q
    |||||||||||||| ||||  |||||||||||||||||||||| ||| ||||| ||| | |||| |||  | | |||||||| ||||| ||| | || ||    
T  36302222 tagaattgattttagcacttaaatttattgttcaactcacttttacatgaatgaatccacacattaatcattttttatcttcaactcaattttaaccgga 36302321  T
Q  392 atcaattcaatcaaaatcaatttttgt 418  Q
    ||||||||| |||||||||||||||||    
T  36302322 atcaattcactcaaaatcaatttttgt 36302348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 46853584 - 46853459
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 389  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||  ||| ||||   ||||||||    ||| |||| ||| ||||  |||||    
T  46853584 attctagaattgattttaacactcaaatttattgttcaactcacttttacataaatatatcctgacataaatcactttaccttcaacttacttgtagcca 46853485  T
Q  390 gaatcaattcaatcaaaatcaatttt 415  Q
     |||||||||| |||| |||||||||    
T  46853484 aaatcaattcactcaagatcaatttt 46853459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 259 - 336
Target Start/End: Complemental strand, 30301079 - 30301002
Alignment:
Q  259 tctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcacttt 336  Q
    |||| |||||||||||||||||||       |||||||||||| ||||||||||| ||||||||||||||| ||||||    
T  30301079 tctatttgaagctagaaattggagttttttaattctagaattggttttaacactcaaatttattgttcaacccacttt 30301002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 429
Target Start/End: Original strand, 51285605 - 51285744
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 389  Q
    |||||||||||||||||  ||||| ||||| ||||| ||| | |||| ||| ||||||||| || ||| ||||   |||  ||| ||||||||| |||||    
T  51285605 attctagaattgatttttgcactcaaatttgttgtttaacccgcttttacatgaatgtatccaagcatgaattactttacattcaactcacttttagcca 51285704  T
Q  390 gaatcaattcaatcaaaatcaatttttgtcaacgccaaac 429  Q
     ||| |||||| ||||||||||||||| ||| ||| ||||    
T  51285705 taataaattcactcaaaatcaatttttctcaccgcaaaac 51285744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 250 - 358
Target Start/End: Complemental strand, 40147939 - 40147832
Alignment:
Q  250 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 349  Q
    ||||| |||||||||| ||||||||| ||||||       |||||||||||||||| |||||| ||||||||  ||||||||||||| |||  |||||||    
T  40147939 agaattgattctacttcaagctagaatttggagcttttg-attctagaattgatttcaacacttgaatttatcattcaactcacttttacattaatgtat 40147841  T
Q  350 cgaaacata 358  Q
    | |||||||    
T  40147840 ccaaacata 40147832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 35058357 - 35058443
Alignment:
Q  250 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaat-ttattgttcaactcacttt 336  Q
    ||||| ||||||||||| ||||||||||| |||       |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  35058357 agaattgattctacttggagctagaaattcgagcttttg-attctagaattgattttaacactcaaatattattgttcaactcacttt 35058443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 35264461 - 35264392
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataa 359  Q
    |||||||||||||||||||||||  |||||||||||||| ||| ||| ||| ||||||| | ||||||||    
T  35264461 attctagaattgattttaacacttaaatttattgttcaagtcatttttacatgaatgtacccaaacataa 35264392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 361
Target Start/End: Complemental strand, 27266876 - 27266773
Alignment:
Q  257 attctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaaca 356  Q
    ||||||||||||||||||||||| ||       |||| |||||| ||||| |||||| |||||||||||||||| ||||| ||| |||  |||| |||||    
T  27266876 attctacttgaagctagaaattgtagctaatg-attcaagaattaatttttacactcaaatttattgttcaactaacttttacatgaaaatatctaaaca 27266778  T
Q  357 taaat 361  Q
    |||||    
T  27266777 taaat 27266773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 31708289 - 31708223
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaaca 356  Q
    ||||||||||||||| |||||| | |||||||  ||||||||||||| ||| ||||||||| |||||    
T  31708289 attctagaattgattctaacacacaaatttataattcaactcacttttacatgaatgtatccaaaca 31708223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 416
Target Start/End: Original strand, 5406964 - 5407061
Alignment:
Q  315 aatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaatcaattt 414  Q
    |||||| | ||||| ||||||| ||| ||||||||| |||||||| ||    || |||| ||||| ||| ||| |||||||||||| |||||||||||||    
T  5406964 aatttactcttcaaatcacttttacatgaatgtatccaaacataactt----taccttcaactcaattttagctagaatcaattcactcaaaatcaattt 5407059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 37335084 - 37335025
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 349  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||| ||| | | ||||||||    
T  37335084 attctagaattgatttttacacttgaattcattgttcaactcatttttatatgaatgtat 37335025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 416
Target Start/End: Complemental strand, 40136214 - 40136096
Alignment:
Q  297 aattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaa 396  Q
    |||||||||||||| || |||| |||||| |||||| ||| |||  |||||||  ||||| ||| | | |||  ||| | |||||||| |||||||| ||    
T  40136214 aattgattttaacaatcaaattcattgttgaactcatttttacaaaaatgtattaaaacaaaaaatattttacattcaagtcacttta-gccagaattaa 40136116  T
Q  397 ttcaatcaaaatcaattttt 416  Q
    |||| |||||||||||||||    
T  40136115 ttcattcaaaatcaattttt 40136096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 400
Target Start/End: Original strand, 3776557 - 3776667
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 389  Q
    ||||||||||| ||||| |||||| ||||| ||| | |||||||||| |||  |||||||| || |||||||    |||  ||| ||||| ||| |||||    
T  3776557 attctagaattaatttttacactcaaatttgttgctgaactcacttttacatcaatgtatccaagcataaatcactttacattcaactcaattttagcca 3776656  T
Q  390 gaatcaattca 400  Q
    |||||||||||    
T  3776657 gaatcaattca 3776667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 35253516 - 35253446
Alignment:
Q  291 ttctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||| ||| || ||| || ||| ||||||    
T  35253516 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaat 35253446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 29475425 - 29475364
Alignment:
Q  300 tgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    |||||||||||||| ||||| |||||||||||| ||| |||  || ||||| ||||||||||    
T  29475425 tgattttaacactcaaattttttgttcaactcagtttgacataaacgtatcaaaacataaat 29475364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 256 - 361
Target Start/End: Complemental strand, 48549095 - 48548993
Alignment:
Q  256 gattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaac 355  Q
    |||||||||||||||||||||||| ||       ||||||||||||||||| | ||||  ||||||||||||||||||||| |||  |||||||| ||||    
T  48549095 gattctacttgaagctagaaattgtagcttctg-attctagaattgatttttaaactc--atttattgttcaactcacttttacataaatgtatcaaaac 48548999  T
Q  356 ataaat 361  Q
    ||||||    
T  48548998 ataaat 48548993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 415
Target Start/End: Original strand, 1233350 - 1233465
Alignment:
Q  300 tgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattc 399  Q
    ||||||| |||||| ||||||||||| |||||||||| ||| ||||||||| ||||||||||| | ||| |||  |||||  || | | | ||| |||||    
T  1233350 tgatttttacactcaaatttattgttgaactcactttcacatgaatgtatctaaacataaattattttaccttaaactcatgtttaactaaaattaattc 1233449  T
Q  400 aatcaaaatcaatttt 415  Q
    ||| ||||||||||||    
T  1233450 aatgaaaatcaatttt 1233465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 28287382 - 28287340
Alignment:
Q  294 tagaattgattttaacactcgaatttattgttcaactcacttt 336  Q
    |||||||||||||||||||| |||||||||||||||| |||||    
T  28287382 tagaattgattttaacactcaaatttattgttcaactaacttt 28287340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 355
Target Start/End: Complemental strand, 213587 - 213522
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaac 355  Q
    ||||||||||||||||| | |||| ||||| |||||||||||||||| ||| ||||| ||| ||||    
T  213587 attctagaattgatttttaaactcaaatttgttgttcaactcacttttacatgaatgcatccaaac 213522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 1514385 - 1514450
Alignment:
Q  297 aattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaatt 362  Q
    |||||||||| |||| | |||||||||||||||||| ||| ||| ||||||||| ||||| |||||    
T  1514385 aattgatttttacacacaaatttattgttcaactcatttttacatgaatgtatccaaacacaaatt 1514450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 319 - 420
Target Start/End: Complemental strand, 6932205 - 6932104
Alignment:
Q  319 tattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaatcaatttttgt 418  Q
    ||||||||||||||| || ||||||||| ||| ||||  | ||  | |||  ||| ||||||||| || ||||||||||||| |||||||||| ||||||    
T  6932205 tattgttcaactcacctttacacgaatgaatccaaacgaagatcattttacattcaactcacttttagtcagaatcaattcattcaaaatcaaattttgt 6932106  T
Q  419 ca 420  Q
    ||    
T  6932105 ca 6932104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 8381962 - 8382047
Alignment:
Q  250 agaatcgattctacttgaagctagaaattggagnnnnnnnattctagaattgattttaacactcgaatttattgttcaactcacttt 336  Q
    ||||| |||||||||||||||||||||||| ||        |||||||||||||||| ||| || | ||||||||||||||||||||    
T  8381962 agaattgattctacttgaagctagaaattgtagcctctag-ttctagaattgatttttacattcaagtttattgttcaactcacttt 8382047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 20026212 - 20026168
Alignment:
Q  292 tctagaattgattttaacactcgaatttattgttcaactcacttt 336  Q
    |||||||||||||| ||||||| |||||||||||||| |||||||    
T  20026212 tctagaattgatttgaacactcaaatttattgttcaattcacttt 20026168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 24587949 - 24587993
Alignment:
Q  292 tctagaattgattttaacactcgaatttattgttcaactcacttt 336  Q
    |||| ||||||||||||||||| |||||||| |||||||||||||    
T  24587949 tctataattgattttaacactcaaatttattattcaactcacttt 24587993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 52263689 - 52263625
Alignment:
Q  298 attgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaatt 362  Q
    ||||||||| |||||| ||||||||||| |||||| ||| |||  |||||||| |||||||||||    
T  52263689 attgatttttacactcaaatttattgtttaactcagttttacattaatgtatccaaacataaatt 52263625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 4458421 - 4458492
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    ||||||||||||  ||||||||| ||||||||||| ||| ||||||| ||  ||||||||| ||| ||||||    
T  4458421 attctagaattggatttaacacttgaatttattgtacaattcacttttacctgaatgtatccaaatataaat 4458492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 34915101 - 34915172
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    ||||||||||||||| |||||| | | |||||  ||||||||||||| ||| ||||||||  ||||||||||    
T  34915101 attctagaattgattctaacacaccattttataattcaactcacttttacatgaatgtattcaaacataaat 34915172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 7790692 - 7790646
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcacttt 336  Q
    |||||| |||||||||| |||| | ||||||||||||||||||||||    
T  7790692 attctataattgatttttacacacaaatttattgttcaactcacttt 7790646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 47892438 - 47892393
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactt 335  Q
    |||||||||||||||||||||||  ||  |||||||||||||||||    
T  47892438 attctagaattgattttaacactaaaacatattgttcaactcactt 47892393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 3016197 - 3016265
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacata 358  Q
    |||||||||||||| || ||||   ||||||  |||||||||||||| ||| ||||||||| |||||||    
T  3016197 attctagaattgatgtttacacataaatttacggttcaactcacttttacatgaatgtatccaaacata 3016265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 350
Target Start/End: Complemental strand, 10324988 - 10324928
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatc 350  Q
    |||||| |||||||||| |||||| |||||||||||  ||||||||| |||  ||||||||    
T  10324988 attctataattgatttttacactcaaatttattgttatactcacttttacattaatgtatc 10324928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 17284131 - 17284171
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaact 330  Q
    |||||| |||||||||| |||||| ||||||||||||||||    
T  17284131 attctaaaattgatttttacactcaaatttattgttcaact 17284171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 30557539 - 30557608
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    ||||||||||||||||| ||||   ||||||| |||||||||||||| | | ||||||||| ||||| ||||    
T  30557539 attctagaattgattttcacaca--aatttatagttcaactcacttttatatgaatgtatccaaacacaaat 30557608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 30850445 - 30850393
Alignment:
Q  294 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatg 346  Q
    |||||||||||||||||  | ||||||| |||||||||||||| ||| |||||    
T  30850445 tagaattgattttaacatacaaatttatagttcaactcacttttacatgaatg 30850393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 388
Target Start/End: Original strand, 35961437 - 35961501
Alignment:
Q  324 ttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcc 388  Q
    ||||||||||||| ||| |||||||| |||||||||||  | ||| |||| ||||||||| ||||    
T  35961437 ttcaactcacttttacatgaatgtatagaaacataaatcattttaccttcaactcacttttagcc 35961501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 52339775 - 52339719
Alignment:
Q  293 ctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtat 349  Q
    |||||||||| ||| | |||| |||||||||||||| |||| || ||||||||||||    
T  52339775 ctagaattgagttttatactcaaatttattgttcaagtcacatttacacgaatgtat 52339719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 399
Target Start/End: Complemental strand, 16972110 - 16972005
Alignment:
Q  294 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaat 393  Q
    ||||||||||||| | || | |||||||||||||| ||||||| ||| ||||||||  ||||| ||||  | ||| |||| ||||||||| || | ||||    
T  16972110 tagaattgatttttaaacacaaatttattgttcaaatcacttttacatgaatgtattcaaacacaaatcattttaccttcaactcacttttagtctgaat 16972011  T
Q  394 caattc 399  Q
    ||||||    
T  16972010 caattc 16972005  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 361
Target Start/End: Original strand, 32927931 - 32927998
Alignment:
Q  294 tagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    ||||||| ||||| |||| | ||||||| |||||||||||||| ||| ||||||||| ||||| ||||    
T  32927931 tagaattcatttttacacacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaat 32927998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 35495295 - 35495366
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    |||||| |||||||||| | |||| |||||||||||||| ||||||| |   ||||||||| ||||||||||    
T  35495295 attctataattgatttttatactcaaatttattgttcaaatcacttttatttgaatgtatccaaacataaat 35495366  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 13384704 - 13384658
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcacttt 336  Q
    ||||||||||||||||| |||| | ||||||| ||||||||||||||    
T  13384704 attctagaattgattttcacacacaaatttatagttcaactcacttt 13384658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 32767422 - 32767495
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacac--gaatgtatcgaaacataaat 361  Q
    |||| |||| ||| ||| |||||  |||||||||||||||||||||| ||||  ||||||||| ||||||||||    
T  32767422 attcgagaactgacttttacacttaaatttattgttcaactcacttttacacatgaatgtatccaaacataaat 32767495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 38386430 - 38386476
Alignment:
Q  369 tcttcgactcactttaagccagaatcaattcaatcaaaatcaatttt 415  Q
    ||||| ||| ||||| ||||||||||||||| |||||||||||||||    
T  38386430 tcttcaacttacttttagccagaatcaattctatcaaaatcaatttt 38386476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 419
Target Start/End: Original strand, 2778577 - 2778677
Alignment:
Q  319 tattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaattcaatcaaaatcaatttttgt 418  Q
    ||||||||||||||||||  ||  ||| |||| ||| ||||||    |||||||| ||||||||| ||| ||||||| ||||   |||||||||||||||    
T  2778577 tattgttcaactcacttttgcataaatttatccaaaaataaatcactttatcttcaactcacttttagctagaatcagttcacataaaatcaatttttgt 2778676  T
Q  419 c 419  Q
    |    
T  2778677 c 2778677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 398
Target Start/End: Complemental strand, 26100196 - 26100088
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 389  Q
    |||||| |||||||||| |||| | ||||||| |||||||||||||| |||  |||| ||| ||||| |||| |  ||| |||| ||||  ||| || ||    
T  26100196 attctataattgatttttacacacaaatttatggttcaactcacttttacataaatgcatccaaacacaaatagctttaccttcaactcgtttttagtca 26100097  T
Q  390 gaatcaatt 398  Q
    |||||||||    
T  26100096 gaatcaatt 26100088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 420
Target Start/End: Original strand, 43024963 - 43024991
Alignment:
Q  392 atcaattcaatcaaaatcaatttttgtca 420  Q
    |||||||||||||||||||||||||||||    
T  43024963 atcaattcaatcaaaatcaatttttgtca 43024991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 15368508 - 15368632
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagcca 389  Q
    |||||| ||||||| || |||||| ||| | |||||||| ||||||| ||| | ||||||  ||||||||||    ||  |||| ||||| ||| |||||    
T  15368508 attctataattgatctttacactcaaatatgttgttcaagtcacttttacatggatgtattcaaacataaatcac-ttcccttcaactcaatttcagcca 15368606  T
Q  390 gaatcaattcaatcaaaatcaatttt 415  Q
    ||||||||||| ||||||||||||||    
T  15368607 gaatcaattcactcaaaatcaatttt 15368632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 361
Target Start/End: Original strand, 8591519 - 8591587
Alignment:
Q  293 ctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaat 361  Q
    ||||||||||||||  ||||| ||||| |||||||||||||||| | | ||||||||| ||| ||||||    
T  8591519 ctagaattgattttttcactcaaatttgttgttcaactcacttttataggaatgtatccaaatataaat 8591587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 396
Target Start/End: Complemental strand, 35139054 - 35138967
Alignment:
Q  309 cactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaattgtattatcttcgactcactttaagccagaatcaa 396  Q
    ||||| |||||||||||||||||||||| | | |||||||||  |||||||||  | ||| |||| ||||| ||| || |||||||||    
T  35139054 cactcaaatttattgttcaactcactttcatatgaatgtatctgaacataaatcattttaccttcaactcaattttagacagaatcaa 35138967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 360
Target Start/End: Original strand, 36639972 - 36640042
Alignment:
Q  290 attctagaattgattttaacactcgaatttattgttcaactcactttaacacgaatgtatcgaaacataaa 360  Q
    |||||||||||| |||| |||||| |||||| |||||| |||||||| ||| |||  |||| |||||||||    
T  36639972 attctagaattgttttttacactcaaatttaatgttcacctcacttttacatgaacctatcaaaacataaa 36640042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 7925431 - 7925468
Alignment:
Q  300 tgattttaacactcgaatttattgttcaactcacttta 337  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  7925431 tgatttttacactcaaatttattgttcaactcacttta 7925468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 420
Target Start/End: Complemental strand, 9952600 - 9952555
Alignment:
Q  375 actcactttaagccagaatcaattcaatcaaaatcaatttttgtca 420  Q
    ||||||||| | ||| |||||||||| |||||||||||||||||||    
T  9952600 actcacttttatccataatcaattcattcaaaatcaatttttgtca 9952555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 9185064 - 9185020
Alignment:
Q  291 ttctagaattgattttaacactcgaatttattgttcaactcactt 335  Q
    |||||||||||||||||||| |  ||||||| |||||||||||||    
T  9185064 ttctagaattgattttaacatttaaatttatcgttcaactcactt 9185020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 37886063 - 37886019
Alignment:
Q  315 aatttattgttcaactcactttaacacgaatgtatcgaaacataa 359  Q
    |||||||||||||||||||||| |||| |||||||  ||||||||    
T  37886063 aatttattgttcaactcacttttacacaaatgtattcaaacataa 37886019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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