View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20760_low_6 (Length: 498)
Name: NF20760_low_6
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20760_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 11 - 498
Target Start/End: Original strand, 11016301 - 11016789
Alignment:
| Q |
11 |
atcatcactgtgattagttcagtgttgatatggtggatttggagtgcactggattggatttggttcacaccaaaaaggatagagaaacgtctcaaacaac |
110 |
Q |
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| T |
11016301 |
atcatcactgtgattacttcagtgttgatatggtggatttggagtgcactggattggatttggttcacaccaaaaaggatagagaaacgtctcaaacaac |
11016400 |
T |
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| Q |
111 |
aaggtctgaaaggaaattcatatagactcatggttggagatattagagatatggttaaaatgatcaaagaagctaaatctaaacctatggatccttactc |
210 |
Q |
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| T |
11016401 |
aaggtctaaaaggaaattcatatagactcatggttggagatattagagatatggttaaaatgatcaaagaagctaagtctaaacctatggatccttactc |
11016500 |
T |
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| Q |
211 |
taatgatattgctcctcgtgttttgccttttgttgttcacactattgctaaatatggtatgttactacaatattcaagcttttctactttggttgtattt |
310 |
Q |
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| T |
11016501 |
taatgatattgctcctcgtgttttgccttttgttgttcatactattgctaaatacggtatgttactacaatattcaagcttttctactttggttgtattt |
11016600 |
T |
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| Q |
311 |
atgnnnnnnnnnnnnngtattcatgctcctctatgttttgaagaaaatgagacttgctagtttgaaattaggccacatgtaagtgaattctggttaaaga |
410 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11016601 |
atgtttttggttttttgtattcatgctcctctatgttttgaagaaaatgagacttgctagtttgaaattaggccacatgtaagtgaattctggttaaaga |
11016700 |
T |
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| Q |
411 |
ttatttaagnnnnnnnattaagaagttaaactagtcc-agaaaaaatggtaccgaggagaatcaaagatgagatcatcaggtgttctaa |
498 |
Q |
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| T |
11016701 |
ttatttaagtttctttattaagaagttaaactagtccaaaaaaaaatggtatcgaggagaatcaaagatgagatcatcaggtgttctaa |
11016789 |
T |
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