View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20760_low_8 (Length: 483)
Name: NF20760_low_8
Description: NF20760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20760_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 3 - 454
Target Start/End: Original strand, 25317732 - 25318176
Alignment:
| Q |
3 |
cattatcatcatcattgtgagatcatgtgagaaaacaaaaccaaacgatcttcgtgtatatcacttcacgcattccaaaacccataccaaaaacaaaaca |
102 |
Q |
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| T |
25317732 |
cattaccatcatcattg--agatcatgtgagaaaacaaaaccaaaccatcttcgtgtgaatcac-----gcattccaaaacgcatcccaaaaccaaaaca |
25317824 |
T |
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| Q |
103 |
gaatgattcactaaggtttttccatcacaagaaacttgggaacaggtacagaactaggcggcggagacaaaacagtgagtccagcgtagagtacttcttg |
202 |
Q |
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| T |
25317825 |
gaatgattcactaaggtttttccatcacaagaaacttgggaactggtacagaactaggcggcggagacaaaacggtgagtccagcgtagagtctttcttg |
25317924 |
T |
|
| Q |
203 |
aaccctaacctgattcatcaccgtaacaggatcaggaccaagtcgatcggttgaacctaaaaccaaatcgtaacattcttcactcttcatcatcaagtta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25317925 |
aaccctaacctgattcatcaccgtaacaggatcaggaccaagccgattcgttgatcctaaaatcaaatcgtaacattcttcactcttcatcatcaagtta |
25318024 |
T |
|
| Q |
303 |
tcgggactcagcttctcacctctcttgagaatcttcacctgacccatcactagattcgatccggggtgcttcataaccgtgcagtttcgatctggcgaaa |
402 |
Q |
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| T |
25318025 |
tcgggacttagcttctcacctctcttgagaatcttcacctgacccatcactagattcgatccggggtgcttcataaccgtgcagtttcgatctggcgaaa |
25318124 |
T |
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| Q |
403 |
tagggttcacggtcgtatgaattcgctttttccgggaagtatggttagggtt |
454 |
Q |
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| T |
25318125 |
tagggttcacggtcgtaggaattcgctttttccgggaagtatggttagggtt |
25318176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 238 - 393
Target Start/End: Complemental strand, 34269746 - 34269594
Alignment:
| Q |
238 |
gaccaagtcgatcggttgaacctaaaaccaaatcgtaacattcttcactcttcatcatcaagttatcgggactcagcttctcacctctcttgagaatctt |
337 |
Q |
| |
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||||||| |||| ||| || ||||| ||||||||||||||||| || ||||| ||| || ||||||||||| |||||||| ||||||||||||||| |
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| T |
34269746 |
gaccaagccgattggtggatcctaagaccaaatcgtaacattcctccctctttgtcac---gtaatcgggactcaacttctcacttctcttgagaatctt |
34269650 |
T |
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| Q |
338 |
cacctgacccatcactagattcgatccggggtgcttcataaccgtgcagtttcgat |
393 |
Q |
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| T |
34269649 |
cccctgacccatcacaagattcaatctagggtgtttcacaaccgtggaatttcgat |
34269594 |
T |
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