View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20761_high_2 (Length: 591)
Name: NF20761_high_2
Description: NF20761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20761_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 12 - 575
Target Start/End: Complemental strand, 44676882 - 44676319
Alignment:
| Q |
12 |
acagacaacgagattaaaaactactggaactcacacttgagtagaaaagtttacagcttccgaggaacatcaacaacaaattataataatatcaaagata |
111 |
Q |
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| T |
44676882 |
acagacaacgagattaaaaactactggaactcacacttgagtagaaaagtttacagcttccgaggaacatcaacaacaaattataataatatcaaagaga |
44676783 |
T |
|
| Q |
112 |
tagagattccatcagaagaaggaatcatagtggatacacctcccaaacgtaaaggtggtagaactagtcgatgggctatgaagaagaacatacgatatat |
211 |
Q |
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| T |
44676782 |
tagagattccatcagaagaaggaatcatagtggatacacctcccaaacgtaaaggtggtagaactagtcgatgggctatgaagaagaacatacgatatat |
44676683 |
T |
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| Q |
212 |
atcccaaaatgttttccaaaaaagtgaacctgcttcaattgttacacttccacccacccctacactagagaccgagaaaatggttatgggctcagtaaat |
311 |
Q |
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| T |
44676682 |
atcccaaaatgttttccaaaaaagtgaacctgcttcaattgttacacttccacccacccctacactagagaccgagaaaatggttatgggctcagtaaat |
44676583 |
T |
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| Q |
312 |
gggccttgttctagtggtgaaaataatgatattgaagctgattgtgaccgtatgtttggaccagatctgaaggtcattaatgatggtgagttgttagatt |
411 |
Q |
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| T |
44676582 |
gggccttgttctagtggtgaaaataatgatattgaagctgattgtgaccgtatgtttggaccagatctgaaggtcattaatgatggtgagttgttagatt |
44676483 |
T |
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| Q |
412 |
ttaatgatattatcatggatgctttggaggtggaagaggtaaaagaaagtaatgatgaaaatgtggctgtgattaatgaaagagtggtgggggacaaaga |
511 |
Q |
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| T |
44676482 |
ttaatgatattatcatggatgctttggaggtggaagaggtaaaagaaagtaatgatgaaaatgtggttgtgattaatgaaatagtggtgggggacaaaga |
44676383 |
T |
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| Q |
512 |
caccaacacaaatggaacaaagggcatagagagaaatgataatgtgacgaatcaatgttcgaat |
575 |
Q |
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| T |
44676382 |
caccaacacaaatggaacaaagggcatagagagaaatgataatgtgacgaatcaatgttcgaat |
44676319 |
T |
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