View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20761_high_3 (Length: 466)
Name: NF20761_high_3
Description: NF20761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20761_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 15 - 454
Target Start/End: Original strand, 43472738 - 43473177
Alignment:
| Q |
15 |
caaagaagcaaaagcagtgcaattgtaaacattcaagatgcttaaagctgtgagcaaattcctctatgcacttgttgttgtgcctttgcggccacttatg |
114 |
Q |
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| T |
43472738 |
caaagaagcaaaagcagtgcaattgtaaacattcaagatgcttaaagctgtgagcaaattcctctatgcacttgttgttgcgcctttgcggccacttatg |
43472837 |
T |
|
| Q |
115 |
ggctgcaattggaagatatgtgaaactaacatttacatgacatgtgcagatattgtgaatgttttgcgtcggggatatattgtgatggttgcaactgtgt |
214 |
Q |
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| T |
43472838 |
ggctgcaattggaagatatgtgaaactaacatttacatgacatgtgcagatattgtgaatgttttgcgtcagggatatattgtgatggttgcaactgtgt |
43472937 |
T |
|
| Q |
215 |
aaattgttttaacaatgttgacaatgaagcggctagacgagaagccgttgaagcaactttagaacgcaatccaaatgcctttaggccgaaaattgcgagc |
314 |
Q |
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| T |
43472938 |
aaattgttttaacaatgttgacaatgaagcggctagacgagaagccgttgaagcaactttagaacgcaatccaaatgcctttaggccgaaaattgcaagc |
43473037 |
T |
|
| Q |
315 |
agtcctcacggaacacgtgataacaaggtatgcaggtttaactttttgtaacggttggtgtttgtgtcgtgttgtgaattatttgtgttgaagtcagttt |
414 |
Q |
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| T |
43473038 |
agtcctcacggaacacgtgataacaaggtatgcaggtttaactttttgtaacggttggtgtttgtgtcgtgttgtgaattatttgtgttgaagtcagttt |
43473137 |
T |
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| Q |
415 |
gagatattgtatttgttaactagatttgttgtgtaccatt |
454 |
Q |
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| T |
43473138 |
gagatattttatttgttaactagatttgttgtgtaccatt |
43473177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 157 - 336
Target Start/End: Original strand, 32945090 - 32945269
Alignment:
| Q |
157 |
tgtgcagatattgtgaatgttttgcgtcggggatatattgtgatggttgcaactgtgtaaattgttttaacaatgttgacaatgaagcggctagacgaga |
256 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |
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| T |
32945090 |
tgtgcagatattgtgaatgttttgcgtcaggaatatattgtgatggttgcaactgtgtaaattgtttcaacaatgttgacaatgaagctgctaggcgaga |
32945189 |
T |
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| Q |
257 |
agccgttgaagcaactttagaacgcaatccaaatgcctttaggccgaaaattgcgagcagtcctcacggaacacgtgata |
336 |
Q |
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| T |
32945190 |
ggctgttgaagctactttagagcgtaatccaaatgcatttaggcccaaaattgcgagcagccctcagggagcacgcgata |
32945269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 32944430 - 32944480
Alignment:
| Q |
15 |
caaagaagcaaaagcagtgcaattgtaaacattcaagatgcttaaagctgt |
65 |
Q |
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| T |
32944430 |
caaagaagcaaaggcagtgcaattgtaaacattctaaatgcttaaaactgt |
32944480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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