View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20761_high_6 (Length: 409)

Name: NF20761_high_6
Description: NF20761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20761_high_6
NF20761_high_6
[»] chr4 (3 HSPs)
chr4 (13-392)||(39984057-39984436)
chr4 (29-365)||(42252231-42252567)
chr4 (342-376)||(35460691-35460725)
[»] chr5 (2 HSPs)
chr5 (13-392)||(41777431-41777820)
chr5 (111-213)||(16160040-16160142)
[»] chr6 (5 HSPs)
chr6 (13-348)||(8234251-8234580)
chr6 (116-329)||(24395248-24395461)
chr6 (116-329)||(18971164-18971377)
chr6 (286-327)||(29071865-29071906)
chr6 (286-327)||(29104438-29104479)
[»] chr8 (2 HSPs)
chr8 (29-324)||(15863921-15864216)
chr8 (248-329)||(38921610-38921691)
[»] chr1 (1 HSPs)
chr1 (53-348)||(19579313-19579607)
[»] scaffold0074 (1 HSPs)
scaffold0074 (116-213)||(25449-25546)
[»] chr2 (2 HSPs)
chr2 (231-317)||(29648387-29648472)
chr2 (349-385)||(40369001-40369037)
[»] chr3 (2 HSPs)
chr3 (137-213)||(10926802-10926878)
chr3 (275-323)||(32517274-32517322)


Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 392
Target Start/End: Complemental strand, 39984436 - 39984057
Alignment:
Q  13 aatattgcaatgtaagaaaaggtgagtagctgattctaaaacattacaaccagccacacacataccatccgatggattaagaatcccacgatgaaccggg 112  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| |||||| ||    
T  39984436 aatattacaatgtaaaaaaaggtgagtagctgattctaaaacattacaaccagccacacacataccatctgttggattgagaatcccacgttgaaccagg 39984337  T
Q  113 ttatctttagtaggaagccaattgcgaagaagacaccacaccaataaagacatctttaacggaatattcttaacccaaacatcaacaacctgagacctgt 212  Q
    ||||||||||||||||||| ||||||||| ||||  |||||||||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||    
T  39984336 ttatctttagtaggaagccgattgcgaaggagacgacacaccaataaagacacctttaacggaatatacttaaaccaaacatcatcaacctgagacctgt 39984237  T
Q  213 caaccattacacctgtgtctgtaataaagcggtatgctgctttcactgagtacccttgaaccgggtctaatatccacctccaagaatcatgaacagtgtc 312  Q
    || |||| || |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  39984236 cagccatgacgcctgtgtctgtaataaagtggtatgctgctttcactgagtatccttgaaccgggtctaacatccacctccaagaatcatgaacagtgtc 39984137  T
Q  313 ctgcaaaacaatattacttaagagagcaacacactctcctcctcccacgcaaacagacgacgtcgccaaaccccctccct 392  Q
     ||||||||||| |||| ||| ||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||    
T  39984136 ttgcaaaacaatgttacataaaagagcaacacactctcctcctcccatgcaaacagacgacgtctccaaacccactccct 39984057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 365
Target Start/End: Original strand, 42252231 - 42252567
Alignment:
Q  29 aaaaggtgagtagctgattctaaaacattacaaccagccacacacataccatccgatggattaagaatcccacgatgaaccgggttatctttagtaggaa 128  Q
    ||||| ||||||||||||||||  |||| |||||| |||||||| || ||||  | ||||  |||||| |  || |||||| | ||||||||||| ||||    
T  42252231 aaaagatgagtagctgattctattacatgacaacccgccacacatatgccatatgttggagaaagaatactccgttgaaccagattatctttagttggaa 42252330  T
Q  129 gccaattgcgaagaagacaccacaccaataaagacatctttaacggaatattcttaacccaaacatcaacaacctgagacctgtcaaccattacacctgt 228  Q
    |||  ||||  |||||||  ||||||||||||||||  ||| |||| |||| |||   ||| |||||||||||||||||||||||| |   | | || ||    
T  42252331 gccggttgcagagaagacgtcacaccaataaagacacatttgacgggatatactttgaccacacatcaacaacctgagacctgtcagcagctgcccccgt 42252430  T
Q  229 gtctgtaataaagcggtatgctgctttcactgagtacccttgaaccgggtctaatatccacctccaagaatcatgaacagtgtcctgcaaaacaatatta 328  Q
    || ||| ||||||||||| | | |||||| ||| ||||| ||| |  ||||||| || |||||| |||||||||||    | |||||||||||| | |||    
T  42252431 gtttgtgataaagcggtaagatactttcattgaatacccgtgagcgtggtctaacattcacctctaagaatcatgagtgttttcctgcaaaacagtgtta 42252530  T
Q  329 cttaagagagcaacacactctcctcctcccacgcaaa 365  Q
    ||||| |||   |||||| |||||||||||| |||||    
T  42252531 cttaaaagattcacacaccctcctcctcccatgcaaa 42252567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 376
Target Start/End: Complemental strand, 35460725 - 35460691
Alignment:
Q  342 cacactctcctcctcccacgcaaacagacgacgtc 376  Q
    ||||||||||||||||||||| |||||||||||||    
T  35460725 cacactctcctcctcccacgccaacagacgacgtc 35460691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 392
Target Start/End: Complemental strand, 41777820 - 41777431
Alignment:
Q  13 aatattgcaatgtaagaaaaggtgagtagctgattctaaaacattacaaccagccacacacataccatccgatggattaagaatcccacgatgaaccggg 112  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||| |||| ||||||  |    
T  41777820 aatattgcaatgtaaaaaaaggtgagtagctgattctaagacattacaaccagccacacacataccatccgttggattgagaatcacacgttgaaccacg 41777721  T
Q  113 ttatctttagtaggaagccaattgcgaagaagacaccacaccaataaagacatctttaacggaatattcttaacccaaacatcaacaacctgagacctgt 212  Q
    ||||||||||||||||||| ||||||||| ||||  |||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||    
T  41777720 ttatctttagtaggaagccgattgcgaaggagacgtcacaccaataaagacacctttaacggaatatacttaaaccaaatatcaacaacctgagacctgt 41777621  T
Q  213 caaccattacacctgtgtctgtaataaagcggtatgctgctttcactgagtacccttgaaccgggtctaatatccacctccaagaatcatgaacagtgtc 312  Q
    || |||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||    
T  41777620 cagccatgacgcctgtgtctgtaataaagcggtatgctgctttcactgagtatccttgaaccgggtctagcatccacctccaagaatcatgaacagtgtc 41777521  T
Q  313 ctgcaaaacaatattacttaagagagcaacacact----------ctcctcctcccacgcaaacagacgacgtcgccaaaccccctccct 392  Q
    |||||||||||| |||| ||| |||||||||||||          ||||||||||||||||||||||||||||| |||||||| ||||||    
T  41777520 ctgcaaaacaatgttacataaaagagcaacacactccctcacacactcctcctcccacgcaaacagacgacgtctccaaacccactccct 41777431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 16160142 - 16160040
Alignment:
Q  111 ggttatctttagtaggaagccaattgcgaagaagacaccacaccaataaagacatctttaacggaatattcttaacccaaacatcaacaacctgagacct 210  Q
    |||| ||||||||||||||||  |||||||| |||| ||||| ||| | ||||| |||| | || |||||||||  ||| |||||| ||||| |||||||    
T  16160142 ggttgtctttagtaggaagcctgttgcgaaggagacgccacaacaacagagacacctttgaagggatattcttatgccacacatcatcaaccagagacct 16160043  T
Q  211 gtc 213  Q
    |||    
T  16160042 gtc 16160040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 7e-62; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 13 - 348
Target Start/End: Original strand, 8234251 - 8234580
Alignment:
Q  13 aatattgcaatgtaagaaaaggtgagtagctgattctaaaacattacaaccagccacacacataccatccgatggattaagaatcccacgatgaaccggg 112  Q
    |||||| ||||| || |||||  ||||||| | |||| | ||||||||||||||||||||||| ||||| | || | ||||||| || || ||||||       
T  8234251 aatattacaatgcaaaaaaagacgagtagccgtttctgagacattacaaccagccacacacatgccatctgttgcaataagaataccccgttgaaccata 8234350  T
Q  113 ttatctttagtaggaagccaattgcgaagaagacaccacaccaataaagacatctttaacggaatattcttaacccaaacatcaacaacctgagacctgt 212  Q
    ||||||||||||||||||||||||||||| |||| |||| ||||| |||||| |||| ||||||||| |||   |||||||||| ||||||||||||| |    
T  8234351 ttatctttagtaggaagccaattgcgaaggagacgccaccccaatcaagacacctttgacggaatatgctttgaccaaacatcatcaacctgagaccttt 8234450  T
Q  213 caaccattacacctgtgtctgtaataaagcggtatgctgctttcactgagtacccttgaaccgggtctaatatccacctccaagaatcatgaacagtgtc 312  Q
    || | ||  ||| |||||      |||| |||||||||||||||||  | ||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  8234451 cagctatggcacttgtgt------taaaacggtatgctgctttcacataatacccttgaaccgggtctaacgtccacctccaagagtcatgaacagtgtc 8234544  T
Q  313 ctgcaaaacaatattacttaagagagcaacacactc 348  Q
    |||||||| ||| |||| ||| ||||||||||||||    
T  8234545 ctgcaaaataatgttacataaaagagcaacacactc 8234580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 116 - 329
Target Start/End: Complemental strand, 24395461 - 24395248
Alignment:
Q  116 tctttagtaggaagccaattgcgaagaagacaccacaccaataaagacatctttaacggaatattcttaacccaaacatcaacaacctgagacctgtcaa 215  Q
    |||||||||||||||||||||||||| |||| || |||||||||||||| |||  | || |||| ||||| ||||||||||  |||||||||  |||||     
T  24395461 tctttagtaggaagccaattgcgaaggagacgccccaccaataaagacaccttggatgggatatgcttaaaccaaacatcattaacctgagatatgtcat 24395362  T
Q  216 ccattacacctgtgtctgtaataaagcggtatgctgctttcactgagtacccttgaaccgggtctaatatccacctccaagaatcatgaacagtgtcctg 315  Q
      || |||||||||   |||||| || | || |||   |||||||| ||||| ||||  || ||||| ||||||||||| || ||||| ||| | |||||    
T  24395361 aaataacacctgtggtagtaatatagtgataggctatcttcactgaatacccatgaataggctctaacatccacctccaggagtcatggacattatcctg 24395262  T
Q  316 caaaacaatattac 329  Q
    ||||||||| ||||    
T  24395261 caaaacaatgttac 24395248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 329
Target Start/End: Original strand, 18971164 - 18971377
Alignment:
Q  116 tctttagtaggaagccaattgcgaagaagacaccacaccaataaagacatctttaacggaatattcttaacccaaacatcaacaacctgagacctgtcaa 215  Q
    |||||||||| ||||  ||||||||| |||| ||||||||||||||||| |||  | ||||||| ||||| | ||||||||  ||||||||| |||||      
T  18971164 tctttagtagaaagctgattgcgaaggagacgccacaccaataaagacaccttagaaggaatatgcttaaacgaaacatcattaacctgagatctgtctg 18971263  T
Q  216 ccattacacctgtgtctgtaataaagcggtatgctgctttcactgagtacccttgaaccgggtctaatatccacctccaagaatcatgaacagtgtcctg 315  Q
      || |||| ||||   |||||| || | || ||| | || ||| | ||||| ||||  |||||||| |||||||||||||| ||||| ||| | |||||    
T  18971264 aaataacacttgtggtagtaatatagtgataggctacctttactcaatacccatgaatagggtctaacatccacctccaagagtcatggacattatcctg 18971363  T
Q  316 caaaacaatattac 329  Q
    ||||| ||| ||||    
T  18971364 caaaataatgttac 18971377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 29071865 - 29071906
Alignment:
Q  286 ccacctccaagaatcatgaacagtgtcctgcaaaacaatatt 327  Q
    ||||| |||||  |||||||||||||||||||||||||||||    
T  29071865 ccaccgccaagtgtcatgaacagtgtcctgcaaaacaatatt 29071906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 327
Target Start/End: Original strand, 29104438 - 29104479
Alignment:
Q  286 ccacctccaagaatcatgaacagtgtcctgcaaaacaatatt 327  Q
    ||||| |||||  |||||||||||||||||||||||||||||    
T  29104438 ccaccgccaagtgtcatgaacagtgtcctgcaaaacaatatt 29104479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 29 - 324
Target Start/End: Complemental strand, 15864216 - 15863921
Alignment:
Q  29 aaaaggtgagtagctgattctaaaacattacaaccagccacacacataccatccgatggattaagaatcccacgatgaaccgggttatctttagtaggaa 128  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| |||||   |||| ||||||| || || ||||||   ||||||||||||||||    
T  15864216 aaaaggtgagtagctgattctataacattacaaccacccacacacatgccatctcttggaataagaataccccgttgaaccaaattatctttagtaggaa 15864117  T
Q  129 gccaattgcgaagaagacaccacaccaataaagacatctttaacggaatattcttaacccaaacatcaacaacctgagacctgtcaaccattacacctgt 228  Q
    |||  ||||| ||||||| ||||| ||||||||||| |||| |||| | || |||   ||||||| || |||||| |||||||||  |  |  | |||||    
T  15864116 gccggttgcggagaagacgccacatcaataaagacacctttgacggtacatgctttggccaaacaacatcaacctaagacctgtccgcagtagcgcctgt 15864017  T
Q  229 gtctgtaataaagcggtatgctgctttcactgagtacccttgaaccgggtctaatatccacctccaagaatcatgaacagtgtcctgcaaaacaat 324  Q
     ||||||||||| || |||| ||||||||| || |||||||||||||| |||| || |||||||| ||| || |||||||||||||||||||||||    
T  15864016 ttctgtaataaaacgatatgatgctttcaccgaatacccttgaaccggatctagtaaccacctcctagagtcttgaacagtgtcctgcaaaacaat 15863921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 38921610 - 38921691
Alignment:
Q  248 gctgctttcactgagtacccttgaaccgggtctaatatccacctccaagaatcatgaacagtgtcctgcaaaacaatattac 329  Q
    |||| ||||||||| ||||| | ||| |||||||| | ||||||||| || ||||| ||| | |||||||||||||| ||||    
T  38921610 gctgttttcactgaatacccattaacggggtctaacagccacctccaggagtcatggacattttcctgcaaaacaatgttac 38921691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 53 - 348
Target Start/End: Original strand, 19579313 - 19579607
Alignment:
Q  53 acattacaaccagccacacacataccatccgatggattaagaatcccacgatgaaccgggttatctttagtaggaagccaattgcgaagaagacaccaca 152  Q
    ||||||||| ||||||||||||| ||||  | |||| ||| ||| || |  |||||| | | |||||||||||| || | |||| ||||||||| |||      
T  19579313 acattacaatcagccacacacatgccatatgttggaataataataccccattgaaccagat-atctttagtaggtaggcgattgtgaagaagacgccatc 19579411  T
Q  153 ccaataaagacatctttaacggaatattcttaacccaaacatcaacaacctgagacctgtcaaccattacacctgtgtctgtaataaagcggtatgctgc 252  Q
    |||||||||||| ||||  ||||| || |||   |||||||||   |||||||||||||||| |||| |||| ||||||||||||| ||| ||| ||||     
T  19579412 ccaataaagacacctttgtcggaacatgctttgaccaaacatcgtgaacctgagacctgtcagccatgacacttgtgtctgtaatatagcagtaagctgt 19579511  T
Q  253 tttcactgagtacccttgaaccgggtctaatatccacctccaagaatcatgaacagtgtcctgcaaaacaatattacttaagagagcaacacactc 348  Q
    |||||| || ||||| ||||||||||||||   ||| |||||| | |||| |||| |||||||| ||| ||| |||| ||| ||||||||||||||    
T  19579512 tttcaccgaatacccatgaaccgggtctaacgaccagctccaatagtcattaacactgtcctgcgaaataatgttacataaaagagcaacacactc 19579607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 25546 - 25449
Alignment:
Q  116 tctttagtaggaagccaattgcgaagaagacaccacaccaataaagacatctttaacggaatattcttaacccaaacatcaacaacctgagacctgtc 213  Q
    |||||||||||||||| ||||||||| |||| |||||||||||||||||  ||  | ||||||| ||||| ||||||||||  ||||||||| |||||    
T  25546 tctttagtaggaagccgattgcgaaggagacgccacaccaataaagacacattggaaggaatatgcttaaaccaaacatcattaacctgagatctgtc 25449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 29648472 - 29648387
Alignment:
Q  231 ctgtaataaagcggtatgctgctttcactgagtacccttgaaccgggtctaatatccacctccaagaatcatgaacagtgtcctgca 317  Q
    |||||||||| ||||||||||||||||| || |||||| ||| ||| |||||  ||||||||||||| ||||||||| |||||||||    
T  29648472 ctgtaataaaacggtatgctgctttcaccgaataccctcgaa-cggatctaacgtccacctccaagagtcatgaacattgtcctgca 29648387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 40369001 - 40369037
Alignment:
Q  349 tcctcctcccacgcaaacagacgacgtcgccaaaccc 385  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  40369001 tcctcctcccacgcaaacagacgacgtctccataccc 40369037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 10926878 - 10926802
Alignment:
Q  137 cgaagaagacaccacaccaataaagacatctttaacggaatattcttaacccaaacatcaacaacctgagacctgtc 213  Q
    |||||||||| |||| |||||||||||| |||||| ||||||| ||| | |||||||||| | || |||||||||||    
T  10926878 cgaagaagacgccacgccaataaagacacctttaaaggaatatgcttgaaccaaacatcatcgacttgagacctgtc 10926802  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 32517274 - 32517322
Alignment:
Q  275 gggtctaatatccacctccaagaatcatgaacagtgtcctgcaaaacaa 323  Q
    |||||||||| |||||||||||| ||| ||||| | |||||||||||||    
T  32517274 gggtctaataaccacctccaagagtcaagaacattttcctgcaaaacaa 32517322  T

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