View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20761_high_7 (Length: 350)
Name: NF20761_high_7
Description: NF20761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20761_high_7 |
 | |
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| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0655 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 59 - 330
Target Start/End: Original strand, 28383840 - 28384115
Alignment:
| Q |
59 |
ctttacgtgttaaagtggatgcattttgaacttagccaaacccatcagcctagaatgttaaagtggtggttagttttggcattaagacttggtggtggat |
158 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
28383840 |
ctttacgtgttaaagtgaaagcattttgaacttagccaaatccatcagcctagaatgttaaagtggtggttagttttggcattaagacttagtggtggat |
28383939 |
T |
|
| Q |
159 |
tattttgtgaaggtagagacgtagtggaacgaagaatgctacatgggaattttaaaagtttccgttgcgaaggtaagagtaccactccacgcgcttcggt |
258 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||| |
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|
| T |
28383940 |
tattttgtgaacgtagagacgtagtggaacaaagaatgcttcatgggaattttaaaagtttccattgtgaaggtaagagtatcactccacgcatttcggt |
28384039 |
T |
|
| Q |
259 |
acatgtatgtatatatttgtgt----ataattatcataatgttgttgttttgaaatgagtgttgtgtgttatatat |
330 |
Q |
| |
|
|| ||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| |
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|
| T |
28384040 |
acgtgtatgtatatatctgtgttttgataattatcataatgttgttgttttgaaatgaatgttatgtgttatatat |
28384115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 59 - 330
Target Start/End: Original strand, 28392716 - 28392990
Alignment:
| Q |
59 |
ctttacgtgttaaagtggatgcattttgaacttagccaaacccatcagcctagaatgttaaagtggtggttagttttggcattaagacttggtggtggat |
158 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
28392716 |
ctttacgtgttaaagtgaaagcattttgaacttagccatacccatcagcctagaatgttaaagtggtggttagttttggcattaagacttagtggtggat |
28392815 |
T |
|
| Q |
159 |
tattttgtgaaggtagagacgtagtggaacgaagaatgctacatgggaattttaaaagtttccgttgcgaaggtaagagtaccactccacgcgcttcggt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |||| ||||| ||||| | ||||||||||| |||||| |
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|
| T |
28392816 |
tattttgtgaaggtagagacgtagtggaacaaagaa-gcttcatgggaattttaaaagtttctgttgtgaaggcaagagcatcactccacgcgtttcggt |
28392914 |
T |
|
| Q |
259 |
acatgtatgtatatatttgtgt----ataattatcataatgttgttgttttgaaatgagtgttgtgtgttatatat |
330 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||||||||||||||||||| |||| |||||||||||| |
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|
| T |
28392915 |
gtgtgtatgtatatatttgttttttgataattattataatgttgttgttttgaaatgaatgttatgtgttatatat |
28392990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 106 - 330
Target Start/End: Original strand, 16421463 - 16421693
Alignment:
| Q |
106 |
gcctagaatgttaaagtggtggttagttttggcattaagacttggtggtggattattttgtgaaggtagagacgtagtggaacgaagaatgctacatggg |
205 |
Q |
| |
|
|||| |||||||||| || | ||||||||||| ||||||| || |||||| ||||||||||||||||| |||||||||||||| ||||||| | |||||| |
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|
| T |
16421463 |
gccttgaatgttaaaatgttagttagttttggtattaagaattagtggtgaattattttgtgaaggtatagacgtagtggaacaaagaatgtttcatggg |
16421562 |
T |
|
| Q |
206 |
aattttaaaagtttccgttgcgaaggtaagagtaccactccacgcgcttcggtacatgtatgtat--atatttgtgt----ataattatcataatgttgt |
299 |
Q |
| |
|
|||||||| |||| ||||| |||||||| | | |||||||||| | || |||| ||||||| | ||||||||| || ||||||||| |||||| |
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|
| T |
16421563 |
aattttaagagttcttgttgcaaaggtaagggcatcactccacgcacgtccgtacgtgtatgtgtgactatttgtgttgtgatgattatcatagtgttgt |
16421662 |
T |
|
| Q |
300 |
tgttttgaaatgagtgttgtgtgttatatat |
330 |
Q |
| |
|
||||||||| ||| || | |||||||||||| |
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|
| T |
16421663 |
tgttttgaagtgaatgctatgtgttatatat |
16421693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 28383865 - 28383822
Alignment:
| Q |
20 |
aaatgctttcactttaacacgtaaagggtttggctaacacttta |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28383865 |
aaatgctttcactttaacacgtaaagggtttggctaacacttta |
28383822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 28392741 - 28392698
Alignment:
| Q |
20 |
aaatgctttcactttaacacgtaaagggtttggctaacacttta |
63 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28392741 |
aaatgctttcactttaacacgtaaagcgtttggctaacacttta |
28392698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 330
Target Start/End: Complemental strand, 21268352 - 21268236
Alignment:
| Q |
222 |
gttgcgaaggtaagagtaccactccacgcgcttcggtacatgtatgt----atatatttgtgt----ataattatcataatgttgttgttttgaaatgag |
313 |
Q |
| |
|
||||| |||||||| | | |||| |||||||||| |||| ||||||| |||||||||||| || ||||| ||| |||||||||||||||||||| |
|
|
| T |
21268352 |
gttgcaaaggtaagggcatcacttcacgcgcttccgtacgtgtatgtgtgtatatatttgtgttgtgatgattattatagtgttgttgttttgaaatgag |
21268253 |
T |
|
| Q |
314 |
tgttgtgtgttatatat |
330 |
Q |
| |
|
|| | |||| ||||||| |
|
|
| T |
21268252 |
tgctatgtgctatatat |
21268236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 329
Target Start/End: Complemental strand, 12528861 - 12528746
Alignment:
| Q |
223 |
ttgcgaaggtaagagtaccactccacgcgcttcggtacatgtat----gtatatatttgtgt----ataattatcataatgttgttgttttgaaatgagt |
314 |
Q |
| |
|
|||| |||||||| | | ||||||||||||||| |||| ||||| ||||||| |||||| |||||| |||||||| |||||||||||||||| | |
|
|
| T |
12528861 |
ttgcaaaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgttatgataattgtcataatggtgttgttttgaaatgaat |
12528762 |
T |
|
| Q |
315 |
g-ttgtgtgttatata |
329 |
Q |
| |
|
| || ||||||||||| |
|
|
| T |
12528761 |
gattatgtgttatata |
12528746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 89 - 329
Target Start/End: Complemental strand, 5537365 - 5537116
Alignment:
| Q |
89 |
cttagccaaacccatcagcctagaatgttaaagtggtggttagttttggcattaagacttggtggtggattattttgtgaaggtagagacgtagtggaac |
188 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| || | ||||||||||| ||||||| || |||||| ||||||||| ||||||| |||||||||||||| |
|
|
| T |
5537365 |
cttagccaaacccttcagccttgaatgttaaaatgttagttagttttggtattaagaattagtggtgaattattttgcgaaggtatagacgtagtggaac |
5537266 |
T |
|
| Q |
189 |
gaagaatgctacatgggaattttaaaagtttccgttgcgaaggtaagagtaccactccacgcgcttcggtacatgta----tgtatatatttgtgt---- |
280 |
Q |
| |
|
||||||| | | |||||||||||| |||| ||||| ||||||| || | ||||||||||||||| |||| |||| |||||||| |||||| |
|
|
| T |
5537265 |
aaagaatgattcctgggaattttaagagttcttgttgcaaaggtaacagcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgtagtg |
5537166 |
T |
|
| Q |
281 |
ataattatcataatgttgttgttttgaaatgagtg-ttgtgtgttatata |
329 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || || ||||||||||| |
|
|
| T |
5537165 |
ataattatcataatggtgttgttttgaaatgaatgattatgtgttatata |
5537116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 89 - 218
Target Start/End: Original strand, 3509631 - 3509760
Alignment:
| Q |
89 |
cttagccaaacccatcagcctagaatgttaaagtggtggttagttttggcattaagacttggtggtggattattttgtgaaggtagagacgtagtggaac |
188 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| || | ||||||||||| ||||||| || |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
3509631 |
cttagccaaacccttcagccttgaatgttaaaatgttagttagttttggtattaagaattagtggtgaattattttgtgaaggtatagacgtagtggaac |
3509730 |
T |
|
| Q |
189 |
gaagaatgctacatgggaattttaaaagtt |
218 |
Q |
| |
|
||||||||| |||||||||||||| |||| |
|
|
| T |
3509731 |
aaagaatgcttcatgggaattttaagagtt |
3509760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 330
Target Start/End: Original strand, 15277852 - 15277925
Alignment:
| Q |
261 |
atgtatgtatatatttgtgt----ataattatcataatgttgttgttttgaaatgagtgttgtgtgttatatat |
330 |
Q |
| |
|
|||| ||||||||||||||| ||||||| |||||| ||||||||| ||||||| || | |||||||||||| |
|
|
| T |
15277852 |
atgtgtgtatatatttgtgttttgataattaacataatattgttgtttggaaatgaatgctatgtgttatatat |
15277925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 106 - 330
Target Start/End: Original strand, 10175 - 10405
Alignment:
| Q |
106 |
gcctagaatgttaaagtggtggttagttttggcattaagacttggtggtggattattttgtgaaggtagagacgtagtggaacgaagaatgctacatggg |
205 |
Q |
| |
|
|||| |||||||||| || | ||||||||||| ||||||| || |||||| ||||||||||||||||| |||||||||||||| ||||||| | |||||| |
|
|
| T |
10175 |
gccttgaatgttaaaatgttagttagttttggtattaagaattagtggtgaattattttgtgaaggtatagacgtagtggaacaaagaatgtttcatggg |
10274 |
T |
|
| Q |
206 |
aattttaaaagtttccgttgcgaaggtaagagtaccactccacgcgcttcggtacatgtatgtat--atatttgtgt----ataattatcataatgttgt |
299 |
Q |
| |
|
|||||||| |||| ||||| |||||||| | | |||||||||| | || |||| ||||||| | ||||||||| || ||||||||| |||||| |
|
|
| T |
10275 |
aattttaagagttcttgttgcaaaggtaagggcatcactccacgcacgtccgtacgtgtatgtgtgactatttgtgttgtgatgattatcatagtgttgt |
10374 |
T |
|
| Q |
300 |
tgttttgaaatgagtgttgtgtgttatatat |
330 |
Q |
| |
|
||||||||| ||| || | |||||||||||| |
|
|
| T |
10375 |
tgttttgaagtgaatgctatgtgttatatat |
10405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 18153327 - 18153439
Alignment:
| Q |
227 |
gaaggtaagagtaccactccacgcgcttcggtacatgtat----gtatatatttgtgt----ataattatcataatgttgttgttttgaaatgagtg-tt |
317 |
Q |
| |
|
||||||||| | | ||||||||||||||| |||| ||||| ||||||| |||||| ||||||||||||||| |||||||||||||||| || || |
|
|
| T |
18153327 |
gaaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgtggtgataattatcataatggtgttgttttgaaatgaatgatt |
18153426 |
T |
|
| Q |
318 |
gtgtgttatatat |
330 |
Q |
| |
|
|||||||||||| |
|
|
| T |
18153427 |
atgtgttatatat |
18153439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 11034996 - 11034946
Alignment:
| Q |
281 |
ataattatcataatgttgttgttttgaaatgagtg-ttgtgtgttatatat |
330 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || || |||||||||||| |
|
|
| T |
11034996 |
ataattatcataatgatgttgttttgaaatgaatgattatgtgttatatat |
11034946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 330
Target Start/End: Original strand, 1311410 - 1311517
Alignment:
| Q |
231 |
gtaagagtaccactccacgcgcttcggtacatgtatgt----atatatttgtgt----ataattatcataatgttgttgttttgaaatgagtgttgtgtg |
322 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||||||| |||||||||||| || ||||| ||| ||||||||||||||| ||| | | |||| |
|
|
| T |
1311410 |
gtaagagtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattattatagtgttgttgttttgaagtgaatactatgtg |
1311509 |
T |
|
| Q |
323 |
ttatatat |
330 |
Q |
| |
|
|||||||| |
|
|
| T |
1311510 |
ttatatat |
1311517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 7489 - 7537
Alignment:
| Q |
226 |
cgaaggtaagagtaccactccacgcgcttcggtacatgtatgtatatat |
274 |
Q |
| |
|
|||||||||| | | ||||||||||||||| |||||||||||| ||||| |
|
|
| T |
7489 |
cgaaggtaagggcatcactccacgcgcttccgtacatgtatgtttatat |
7537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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