View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20761_high_8 (Length: 312)
Name: NF20761_high_8
Description: NF20761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20761_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 43473407 - 43473313
Alignment:
| Q |
139 |
tgcactggtttcattaacaaagaaaacatttaatagaacaaaaaattaatatatgtgggaaggtatcccttatcaacaaaaatcctcaatgaact |
233 |
Q |
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| T |
43473407 |
tgcactggtttcattaacaaagaaaacatttaatagaacaaaaaattaatatatgtggggaggtatcccttatcaacaaaaatcctcaacgaact |
43473313 |
T |
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Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 43473530 - 43473446
Alignment:
| Q |
13 |
aatatcaataatctgaattattacttcattttaaattgtgggcatttatttatatagactttataatttacatcctcttgcttctaat |
100 |
Q |
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| T |
43473530 |
aatatcaataatctgaatta---cttcattttaaattgtgggcatttatttatatagactttataatttacatcctcttgcttctaat |
43473446 |
T |
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