View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20761_low_1 (Length: 878)
Name: NF20761_low_1
Description: NF20761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20761_low_1 |
 |  |
|
| [»] scaffold0022 (1 HSPs) |
 |  |  |
|
| [»] scaffold0013 (1 HSPs) |
 |  |  |
|
| [»] scaffold0205 (1 HSPs) |
 |  |  |
|
| [»] scaffold0005 (1 HSPs) |
 |  |  |
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| [»] scaffold0328 (1 HSPs) |
 |  |  |
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| [»] scaffold0103 (1 HSPs) |
 |  |  |
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| [»] scaffold0101 (1 HSPs) |
 |  |  |
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Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 18 - 585
Target Start/End: Complemental strand, 26563249 - 26562683
Alignment:
| Q |
18 |
gttctgaacctgctagagcgtcaattccatggagacatatggaccaaaacgctcaagacaagacactacggcctgagtgagcatactagttccgatgcac |
117 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| || |||||||||||| |||||||||||||| |
|
|
| T |
26563249 |
gttctggacctactagagcgtcaattccatggagacatatggatcaaaacgctcaagacaagaaactacagcttgagtgagcatattagttccgatgcac |
26563150 |
T |
 |
| Q |
118 |
attaccgcacataccgcacataagcacccccatgtgcttcctgcatcatacatgtggcctccaacagctccctgatgaggtgctgcatttcacagaagtc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26563149 |
attaccgcacataccgcacataagcacccccatgtgcttcctgcatcatacatgtggcctccaacagctccctgatgaggtgctgcatttcacagaagtc |
26563050 |
T |
 |
| Q |
218 |
gttagcgcctctttatcctgtctaagagtgatttcgcgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactc |
317 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26563049 |
gttagcgcctctttatcctatctaagagtgatttcgcgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactc |
26562950 |
T |
 |
| Q |
318 |
tgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagaccgcaccaccgccgtgttggagcactgcacgccaccattgcc |
417 |
Q |
| |
|
|| | |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
26562949 |
tggcctaagcgttggagtgctaatgtgcctgcagacacctttcgttccaccgtgaagaccgcaccgccgccgtgtttgagcactgcacgccaccattgcc |
26562850 |
T |
 |
| Q |
418 |
ttcatctgttcattattggacatatcaaatgtattcacacnnnnnnnnnagataaacaaatttaacctattccattcattaaattcgtcataatacatac |
517 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26562849 |
ttcatttgttcattattggacatatcaaatgtattcacac-ttttttttagataaacaaatttaacctattccattcattaaattcgtcataatacatac |
26562751 |
T |
 |
| Q |
518 |
tgaaatataatcaaaagtgtagtgagtagcataagtgagtgtcgctctatctaacaattgaacaatat |
585 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26562750 |
taaaatataatcaaaagtgtagtgagtagcataagtgagtgtcgctctatctaacaattgaacaatat |
26562683 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 784 - 876
Target Start/End: Complemental strand, 26562678 - 26562586
Alignment:
| Q |
784 |
tgatgcatgtccatcattctgacccatgtttactccatcttccacggaacctgttgctattcatgtttggttctgctgttgatgatgtccatc |
876 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
26562678 |
tgatgcatgtccatcattctgacccatgtttactccatcttccacggaacctgttgctattcatgtttggttctgctgttgttgatgttcatc |
26562586 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 154 - 405
Target Start/End: Complemental strand, 34890116 - 34889866
Alignment:
| Q |
154 |
cttcctgcatcatacatgtggcctccaacagctccctgatgaggtgctgcatttcacagaagtcgttagcgcctctttatcctgtctaagagtgatttcg |
253 |
Q |
| |
|
||||||||| | ||| ||||||||||||| ||||| |||||||| | |||||||||||| |||| || ||| || |||||| |||| |||||| || |
|
|
| T |
34890116 |
cttcctgcaccgtacttgtggcctccaacggctccttgatgaggcaccacatttcacagaatccgttgtcgtctccttctcctgtataagggtgattccg |
34890017 |
T |
 |
| Q |
254 |
cgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcagac |
353 |
Q |
| |
|
| ||||| |||||||| |||| ||||| |||| ||| |||||||| ||||||||||||||| ||||||| || ||||||||| |||||| ||||||| | |
|
|
| T |
34890016 |
catcaccctcaaggtatgattcttttcccacacgcttgtacacattcaacctcatttcctacactgactt-agtgttggagtggtaacgttcctgcaggc |
34889918 |
T |
 |
| Q |
354 |
acctttcgttccaccatgaagaccgcaccaccgccgtgttggagcactgcac |
405 |
Q |
| |
|
||| ||||||||| | || ||| ||||||| |||||||| ||||||| |||| |
|
|
| T |
34889917 |
acccttcgttccatcgtggagatcgcaccatcgccgtgtcggagcaccgcac |
34889866 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 247 - 376
Target Start/End: Original strand, 12163675 - 12163804
Alignment:
| Q |
247 |
gatttcgcgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcc |
346 |
Q |
| |
|
|||| ||||||||| ||||| ||||||| |||||| ||| | ||||||||||| |||| |||||||||| || || | |||||||||||||||||||||| |
|
|
| T |
12163675 |
gattccgcgtcaccctcaagttacgattcatttcccacataattttacacattcaaccccatttcctacactaacatgagcgttggagtgctaacgtgcc |
12163774 |
T |
 |
| Q |
347 |
tgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
| ||| |||| | ||||||||| ||||||| |
|
|
| T |
12163775 |
ttcaggcaccctccgttccaccgtgaagac |
12163804 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 284 - 375
Target Start/End: Complemental strand, 2226710 - 2226618
Alignment:
| Q |
284 |
cacactttt-acacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaaga |
375 |
Q |
| |
|
||||||||| |||||||| | ||||||||| || || |||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
2226710 |
cacacttttcacacatttcatctcatttcccacactaacttgagcgttggagtgctaatgtgcctgcagacacctttcgtcccaccgtgaaga |
2226618 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 5925533 - 5925584
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5925533 |
ctgacttgatcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
5925584 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 13292181 - 13292240
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
||||||| |||||| |||||||||||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
13292181 |
ctgacttgagcgttagagtgctaacgtacctgcagacacctttccttccaccacgaagac |
13292240 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 21161274 - 21161224
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21161274 |
ctgacttgagcgttggagtgctaacgtgcctgcagaca-ctttcgttccacc |
21161224 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 7486570 - 7486527
Alignment:
| Q |
325 |
agcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
7486570 |
agcgttggagtgctaacgtgcctgcatgcacctttcattccacc |
7486527 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 9135419 - 9135478
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
||||||| |||||| |||||||||||||||| | |||||||||||||||| ||||||| |
|
|
| T |
9135419 |
ctgacttgagcgttagagtgctaacgtgcctatatgcacctttcgttccaccgtgaagac |
9135478 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 376
Target Start/End: Complemental strand, 12644810 - 12644759
Alignment:
| Q |
325 |
agcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||||||||||| ||||||| |
|
|
| T |
12644810 |
agcgtcggagtgctaacttgcctgcatgcacctttcgttccaccgtgaagac |
12644759 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 26762969 - 26763020
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
26762969 |
ctgacttgagcgttggagtgctaacgtgcctgcaagaacctttcgctccacc |
26763020 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 360
Target Start/End: Complemental strand, 27803401 - 27803358
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttc |
360 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
27803401 |
ctgacttgagcgttggagtgctaacgtgcctgtagacatctttc |
27803358 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 271 - 341
Target Start/End: Original strand, 9885710 - 9885780
Alignment:
| Q |
271 |
gatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaac |
341 |
Q |
| |
|
|||| |||||| ||||| ||||||| ||| ||| ||||||| ||| | ||||| ||||||||||||||||| |
|
|
| T |
9885710 |
gattcatttcccacacatttttacaaattcaacgtcatttcatacaccgacttgagcgttggagtgctaac |
9885780 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 39879420 - 39879362
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaaga |
375 |
Q |
| |
|
||||||| |||||| |||| ||||||| |||||| ||||||||||||||||| ||||| |
|
|
| T |
39879420 |
ctgacttgagcgttaaagtgttaacgtgtctgcaggcacctttcgttccaccacgaaga |
39879362 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 8e-42; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 151 - 354
Target Start/End: Original strand, 5528268 - 5528471
Alignment:
| Q |
151 |
gtgcttcctgcatcatacatgtggcctccaacagctccctgatgaggtgctgcatttcacagaagtcgttagcgcctctttatcctgtctaagagtgatt |
250 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||||||| |||| | || |||| ||||| | |||| ||||||| || |||| | |||| |||||| |
|
|
| T |
5528268 |
gtgcttcctgcaccgtacacatggcctccaacagctccctaatgaagcgccgcatctcacaaagaccgttggcgcctccttctcctatataagggtgatt |
5528367 |
T |
 |
| Q |
251 |
tcgcgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgca |
350 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||| |
|
|
| T |
5528368 |
ctgcgtcaccctcaaggtacgatttatttctcacacacttttacacattcaacctcatttcctactctgacttgggtgttggaatgctaacgtgcctgca |
5528467 |
T |
 |
| Q |
351 |
gaca |
354 |
Q |
| |
|
|||| |
|
|
| T |
5528468 |
gaca |
5528471 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 27158381 - 27158266
Alignment:
| Q |
241 |
aagagtgatttcgcgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaa |
340 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||| |||||| ||||||||||||||||| ||||| ||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
27158381 |
aagagtgattcaacgtcaccctcaaggtacaattcatttcccacacacttttacacattcaaccttatttcgtacactgacttaagtgttggagtgctaa |
27158282 |
T |
 |
| Q |
341 |
cgtgcctgcagacacc |
356 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
27158281 |
agtgtctgcagacacc |
27158266 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 253 - 368
Target Start/End: Original strand, 35314118 - 35314231
Alignment:
| Q |
253 |
gcgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcaga |
352 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||| |||| ||||| || ||||||||||| ||||||| |||||||||||||||||||| ||||| | |
|
|
| T |
35314118 |
gcgtcaccctcaaggtacgattcatttcccacacatttttgtacattcaatctcatttccta--ctgacttgagcgttggagtgctaacgtgtctgcaaa |
35314215 |
T |
 |
| Q |
353 |
cacctttcgttccacc |
368 |
Q |
| |
|
|||| | ||||||||| |
|
|
| T |
35314216 |
caccctccgttccacc |
35314231 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 1475806 - 1475723
Alignment:
| Q |
293 |
acacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
|||||||| | |||||||| ||| ||||||| ||||||||||||||| | |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
1475806 |
acacatttcatctcatttcttacactgacttgagcgttggagtgctagcatgcctgcagacacctttcgtcccaccgtgaagac |
1475723 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 10896200 - 10896103
Alignment:
| Q |
253 |
gcgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgca |
350 |
Q |
| |
|
||||| || ||||||||||||| |||| || ||||| || |||| || ||||||||| |||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
10896200 |
gcgtcgccctcaaggtacgattcattttctgcacaccttaacactttcgacctcatttactacactaacttgagcgttggagtgctaacgtgcctgca |
10896103 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 350
Target Start/End: Complemental strand, 8868566 - 8868367
Alignment:
| Q |
151 |
gtgcttcctgcatcatacatgtggcctccaacagctccctgatgaggtgctgcatttcacagaagtcgttagcgcctctttatcctgtctaagagtgatt |
250 |
Q |
| |
|
||||||| |||| | |||| ||| |||||||| ||||| || |||| || | |||||||||||| ||||| |||| || |||| |||| || ||| |
|
|
| T |
8868566 |
gtgcttcttgcaccgtacacgtgtcctccaacggctccatgccgaggcgccgtatttcacagaagcttttagcccctccttctcctacataagggttatt |
8868467 |
T |
 |
| Q |
251 |
tcgcgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgca |
350 |
Q |
| |
|
| ||||| || ||||||||||| |||| | ||||| || ||||||| |||||||||||||| || |||| || ||||||||||||||||||||||| |
|
|
| T |
8868466 |
ttgcgtcgcccgcaaggtacgatccattttccgcacaccttaacacattcgacctcatttcctacactaacttgagtgttggagtgctaacgtgcctgca |
8868367 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 12516215 - 12516159
Alignment:
| Q |
320 |
acttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
12516215 |
acttgagcgtcggagtgctaacgtgtctgcaggcacctttcgtttcaccatgaagac |
12516159 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 325 - 376
Target Start/End: Original strand, 2311900 - 2311951
Alignment:
| Q |
325 |
agcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
2311900 |
agcgttggagtgctaacgtatctgcagacacctttcattccaccacgaagac |
2311951 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 317 - 360
Target Start/End: Original strand, 8122972 - 8123015
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttc |
360 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8122972 |
ctgacttgagcgttggagtgctaacgtgcctgcatacacctttc |
8123015 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 9007834 - 9007879
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgt |
362 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
9007834 |
ctgacttgagcgttggagtgttaacgtgcctgcaggcacctttcgt |
9007879 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 7743393 - 7743465
Alignment:
| Q |
304 |
ctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
|||||||||||| || |||| |||||| |||||||||||||| |||| | |||||||||| ||| ||||||| |
|
|
| T |
7743393 |
ctcatttcctacactaacttgagcgttcgagtgctaacgtgcatgcatatacctttcgtttcactgtgaagac |
7743465 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 17485682 - 17485733
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||| |||||||| ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
17485682 |
ctgacttgagcgttggggtgctaatgtgcccacagacacctttcgttccacc |
17485733 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 21649446 - 21649395
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||| | |||||| |||||||||||| ||||| |||||||||||||||| |
|
|
| T |
21649446 |
ctgacttgatcgttggggtgctaacgtgcttgcaggcacctttcgttccacc |
21649395 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 341
Target Start/End: Original strand, 25410406 - 25410492
Alignment:
| Q |
254 |
cgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaac |
341 |
Q |
| |
|
||||||| || || ||||||| |||||| ||| | ||||||||||| || |||||||||||| ||||||| ||| || |||||||||| |
|
|
| T |
25410406 |
cgtcaccctccagatacgattcatttcccacata-ttttacacattcaatctcatttcctacactgacttgagcattagagtgctaac |
25410492 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 10896416 - 10896326
Alignment:
| Q |
29 |
gctagagcgtcaattccatggagacatatggacc-aaaacgctcaagacaagacactacggcctgagtgagcatactagttccgatgcaca |
118 |
Q |
| |
|
||||||||| |||||||||| ||||| |||||| ||||| |||| ||||||| ||| ||||||||||||| ||||||||| |||||| |
|
|
| T |
10896416 |
gctagagcgccaattccatgaagacacgtggacccaaaaccgtcaaaacaagacgttacagcctgagtgagcacgctagttccggtgcaca |
10896326 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 202 - 344
Target Start/End: Complemental strand, 53402638 - 53402496
Alignment:
| Q |
202 |
gcatttcacagaagtcgttagcgcctctttatcctgtctaagagtgatttcgcgtcaccttcaaggtacgatttatttcctacacacttttacacattta |
301 |
Q |
| |
|
||||||||| |||| |||||||||||| || |||| | |||| |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||| | |
|
|
| T |
53402638 |
gcatttcacggaagacgttagcgcctcattctcctatataagggtgatttcgcgtcaccctcaaggtacgattcatttcccacacacttttacacattca |
53402539 |
T |
 |
| Q |
302 |
acctcatttcctactctgacttaagcgttggagtgctaacgtg |
344 |
Q |
| |
|
||||||||||| | | ||||| ||||||| | |||||||||| |
|
|
| T |
53402538 |
tcctcatttcctgcaccgacttgagcgttgaaatgctaacgtg |
53402496 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 166 - 444
Target Start/End: Original strand, 5321859 - 5322137
Alignment:
| Q |
166 |
tacatgtggcctccaacagctccctgatgaggtgctgcatttcacagaagtcgttagcgcctctttatcctgtctaagagtgatttcgcgtcaccttcaa |
265 |
Q |
| |
|
|||| |||||||||||| |||||||||||| || |||||||||||||||||||| | ||| || | || | ||| |||||| ||||||||||| |
|
|
| T |
5321859 |
tacacgtggcctccaactattccctgatgaggcgccacatttcacagaagtcgttagtgtctccttcttctatataaaggtgattcaatgtcaccttcaa |
5321958 |
T |
 |
| Q |
266 |
ggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttcc |
365 |
Q |
| |
|
||||||| |||| || || | ||||||||| ||||||||||||||| ||||||| | | ||| |||||||| |||||| | ||||||||| ||| |
|
|
| T |
5321959 |
actacgattcatttttcacgcattgttacacattcaacctcatttcctacactgacttgaacattgatgtgctaacatgcctgtaagcacctttcgctcc |
5322058 |
T |
 |
| Q |
366 |
accatgaagaccgcaccaccgccgtgttggagcactgcacgccaccattgccttcatctgttcattattggacatatca |
444 |
Q |
| |
|
| | ||||||| ||||| || || | | | ||||||| ||||| ||||||| |||||||||||||| || |||||| |
|
|
| T |
5322059 |
atcgtgaagactgcaccgcctccattccgaaacactgcataccaccgttgcctttatctgttcattatttgagatatca |
5322137 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 322
Target Start/End: Complemental strand, 4826372 - 4826199
Alignment:
| Q |
154 |
cttcctgcatcatacatgtggcctccaacagctccctgatgaggtgctgcatttcacagaagtcgttagcgcctctttatcctgtctaagagtg-----a |
248 |
Q |
| |
|
||||||||| | |||| ||||||| |||| ||| |||||||| |||||||||||| ||||||||||||||||| || |||| | | |||| | | |
|
|
| T |
4826372 |
cttcctgcaccgtacacgtggccttcaacgtctctttgatgaggcgctgcatttcacggaagtcgttagcgcctccttctcctatattagagagattata |
4826273 |
T |
 |
| Q |
249 |
tttcgcgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgact |
322 |
Q |
| |
|
|| ||||||| | |||| |||||||| |||||| |||||||||||| || | || |||||||| ||| |||||| |
|
|
| T |
4826272 |
ttccgcgtcatcctcaaagtacgattcatttcccacacacttttacccactcaatctcatttcttacactgact |
4826199 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 12683815 - 12683767
Alignment:
| Q |
320 |
acttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12683815 |
acttgagcgttggagtgctaacgtgcctgcaggcacctttcgttccacc |
12683767 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 317 - 364
Target Start/End: Original strand, 14602073 - 14602120
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttc |
364 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
14602073 |
ctgacttgagcgttggattgctaacgtgcctgcagacaactttcgttc |
14602120 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 15514619 - 15514670
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| |||| ||||||||||| |
|
|
| T |
15514619 |
ctgacttgagcgttggagtgctaacgtgcctacaggcacccttcgttccacc |
15514670 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 53618849 - 53618794
Alignment:
| Q |
289 |
ttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtg |
344 |
Q |
| |
|
|||| |||||| ||||||||||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
53618849 |
tttttcacattcaacctcatttcttacactgacttaagcgttagagtgctaacgtg |
53618794 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 3981981 - 3981924
Alignment:
| Q |
319 |
gacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
||||| || |||||||||||||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
3981981 |
gacttgagtgttggagtgctaacgtgcatgcatgcacctttcgttccaccgtgaagac |
3981924 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 364
Target Start/End: Complemental strand, 13171112 - 13171065
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttc |
364 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13171112 |
ctgacttgagagttggagtgctaacgtgcctgcaagcacctttcgttc |
13171065 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 15742211 - 15742270
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
||||||| ||||| ||||||||||||||| |||| ||||||||| ||||||| |||||| |
|
|
| T |
15742211 |
ctgacttgagcgtaagagtgctaacgtgccagcaggcacctttcgctccaccacgaagac |
15742270 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 43543289 - 43543395
Alignment:
| Q |
253 |
gcgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcaga |
352 |
Q |
| |
|
|||||||| ||||| ||| ||| |||||| ||||||| |||| ||| |||||||||| |||| |||| || | | ||||| |||| ||||||||||| | |
|
|
| T |
43543289 |
gcgtcaccctcaagatacaattcatttcccacacactcttacgcatacaacctcattttctacactgatttgaacattggaatgcttacgtgcctgcaaa |
43543388 |
T |
 |
| Q |
353 |
caccttt |
359 |
Q |
| |
|
|| |||| |
|
|
| T |
43543389 |
catcttt |
43543395 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 5518573 - 5518524
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttcca |
366 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||| |||||||||||||| |
|
|
| T |
5518573 |
ctgacttgagcgttgaagtgctaacgtgtctgcactcacctttcgttcca |
5518524 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 4e-31; HSPs: 20)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 154 - 375
Target Start/End: Complemental strand, 40800319 - 40800099
Alignment:
| Q |
154 |
cttcctgcatcatacatgtggcctccaacagctccctgatgaggtgctgcatttcacagaagtcgttagcgcctctttatcctgtctaagagtgatttcg |
253 |
Q |
| |
|
||||||||| | |||||||||| |||||| ||| ||||| || | |||||||| |||||||||||| ||| || |||| | |||| ||||||||| |
|
|
| T |
40800319 |
cttcctgcaccgtacatgtggcttccaacgactcactgataagacaccacatttcacggaagtcgttagcatctccttctcctatataagggtgatttcg |
40800220 |
T |
 |
| Q |
254 |
cgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcagac |
353 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||||||||| | ||| |||||| |||| || | || | ||||| ||||||||||||||| || | |
|
|
| T |
40800219 |
cgtcaccctcaaggtacgattcatttcctccacacttttacacaatcaacatcattt-ctacactaatttgaacgttgaagtgctaacgtgcctacattc |
40800121 |
T |
 |
| Q |
354 |
acctttcgttccaccatgaaga |
375 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
40800120 |
acctttcgttccaccgtgaaga |
40800099 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 151 - 356
Target Start/End: Complemental strand, 17560963 - 17560757
Alignment:
| Q |
151 |
gtgcttcctgcatcatacatgtggcctccaacagctccctgatgaggtgctgcatttcacagaagtcgttagcgcctctttatcctgtctaagagtgatt |
250 |
Q |
| |
|
|||||||||||| | |||| ||||||||||| |||| ||||||||| | || ||||| ||| | ||||||||||| || |||| | |||| |||||| |
|
|
| T |
17560963 |
gtgcttcctgcaccgtacacatggcctccaacggctctctgatgaggctccgcgtttcatggaatttgttagcgcctccttctcctatataagggtgatt |
17560864 |
T |
 |
| Q |
251 |
tcgcgtcaccttcaaggtacgatttatttc-ctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgc |
349 |
Q |
| |
|
|||||||| ||||||||| ||| |||| | ||||| | ||||||||| ||||||||||||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
17560863 |
ctgcgtcaccctcaaggtacaattcatttttccacacattcttacacattcaacctcatttcctacactgacttgagcgttgggctgctaacgtgcctgc |
17560764 |
T |
 |
| Q |
350 |
agacacc |
356 |
Q |
| |
|
||||||| |
|
|
| T |
17560763 |
agacacc |
17560757 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 252 - 369
Target Start/End: Original strand, 41501066 - 41501183
Alignment:
| Q |
252 |
cgcgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcag |
351 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||| ||||||||||| ||||||||||||||| ||||||| || ||| || |||||| |||||||||| |
|
|
| T |
41501066 |
cgcgtcaccctcaaggtacgattcatttcccacacttttttacacattaaacctcatttcctacactgacttgagtgttagattgctaatgtgcctgcag |
41501165 |
T |
 |
| Q |
352 |
acacctttcgttccacca |
369 |
Q |
| |
|
|||| | |||||||||| |
|
|
| T |
41501166 |
gcaccctccgttccacca |
41501183 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 17672019 - 17671947
Alignment:
| Q |
304 |
ctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
|||||||||||| |||| || ||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17672019 |
ctcatttcctacactgatttgagcattggagcgctaacgtgtctgcagacacctttcgttccaccatgaagac |
17671947 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 284 - 370
Target Start/End: Complemental strand, 12634913 - 12634826
Alignment:
| Q |
284 |
cacactttt-acacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccat |
370 |
Q |
| |
|
||||||||| ||||||| | |||||||||||| |||||||||| ||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
12634913 |
cacacttttcacacattccatctcatttcctacactgacttaagagttggagtgttaacgtgcctgcatgcacctttcgttccaccat |
12634826 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 17626947 - 17626875
Alignment:
| Q |
304 |
ctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
|||||||||||| |||| || ||| |||||| ||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
17626947 |
ctcatttcctacactgatttgagcattggagagctaacgtgtctgcagacacctttcgttccaccataaagac |
17626875 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 45715028 - 45714969
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
45715028 |
ctgacttgagcgttggagtgctaacgtgcctgcatgcacctttcgttccaccaggaagac |
45714969 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 20120380 - 20120322
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaaga |
375 |
Q |
| |
|
||||||| || || |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20120380 |
ctgacttgagagtcggagtgctaacgtgcctgcagacacctttcgttccaccgtgaaga |
20120322 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 12127721 - 12127781
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagacc |
377 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
12127721 |
ctgacttgagcgttggagtgctaacgtgcctgcaggtacctttcgtcccaccgcgaagacc |
12127781 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 12168998 - 12168954
Alignment:
| Q |
324 |
aagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
12168998 |
aagcgttggagtgttaatgtgcctgcagacacctttcgttccacc |
12168954 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 13779107 - 13779187
Alignment:
| Q |
267 |
gtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcct |
347 |
Q |
| |
|
|||| ||| |||||| ||| ||||||||||||| ||||||||||| ||| || |||| |||||| || ||||||||||||| |
|
|
| T |
13779107 |
gtacaattcatttcccacaaacttttacacattcaacctcatttcttacactaacttgagcgttagactgctaacgtgcct |
13779187 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 351
Target Start/End: Complemental strand, 36069479 - 36069296
Alignment:
| Q |
169 |
atgtggcctccaacagctccctgatgaggtgctgcatttcacagaagtcgttagcgcctctttatcctgtctaagagtgatttcgcgtcaccttcaaggt |
268 |
Q |
| |
|
|||||||||| |||||| || |||||||| || ||||||||| |||| ||||||||||| || || || || | || | |||||||| ||||||| |
|
|
| T |
36069479 |
atgtggcctctaacagccccttgatgaggcgccgcatttcacggaagcagttagcgcctccttcctctttcgaaaggcgactctgcgtcaccctcaaggt |
36069380 |
T |
 |
| Q |
269 |
acgatttatttcctacacactt-ttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcag |
351 |
Q |
| |
|
|| ||| |||||| | ||| || ||||||||| ||||||||||||| | | |||| ||| || |||||||||||| ||||||| |
|
|
| T |
36069379 |
acaattcatttcccaaacatttcttacacattcaacctcatttcctccacaaacttgagcattagagtgctaacgttcctgcag |
36069296 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 29711050 - 29711000
Alignment:
| Q |
318 |
tgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
29711050 |
tgacttgagcgttggagtgctaacgtgcatgcatacaccttttgttccacc |
29711000 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 333 - 369
Target Start/End: Complemental strand, 15825171 - 15825135
Alignment:
| Q |
333 |
agtgctaacgtgcctgcagacacctttcgttccacca |
369 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15825171 |
agtgctaacgtgcctgcagacacatttcgttccacca |
15825135 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 45258213 - 45258261
Alignment:
| Q |
320 |
acttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
45258213 |
acttgagctttggagtgttaacgtgcctgcagacatctttcgttccacc |
45258261 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 356
Target Start/End: Original strand, 26713593 - 26713632
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacc |
356 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
26713593 |
ctgacttgagtgttggagtgctaacgtgcctgcagacacc |
26713632 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 323
Target Start/End: Complemental strand, 41969516 - 41969382
Alignment:
| Q |
189 |
ctgatgaggtgctgcatttcacagaagtcgttagcgcctctttatcctgtctaagagtgatttcgcgtcaccttcaaggtacgatttatttcctacacac |
288 |
Q |
| |
|
||||||||| |||| |||||||| || | |||||| |||| || || | |||| |||| ||||||||||| |||||||||||| ||||| | ||||| |
|
|
| T |
41969516 |
ctgatgaggcgctgtatttcacataaatagttagcacctccttcctctatataagggtgacttcgcgtcaccctcaaggtacgatatattt-ttccacac |
41969418 |
T |
 |
| Q |
289 |
-ttttacacatttaacctcatttcctactctgactt |
323 |
Q |
| |
|
|||||| |||| ||||||||||| ||| ||||||| |
|
|
| T |
41969417 |
tttttacccattcaacctcatttcttacactgactt |
41969382 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 29137933 - 29137883
Alignment:
| Q |
318 |
tgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
|||||| ||||| || |||||||||| |||||||||| ||||||||||||| |
|
|
| T |
29137933 |
tgacttgagcgtcggtgtgctaacgtacctgcagacatctttcgttccacc |
29137883 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 27846577 - 27846622
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgt |
362 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
27846577 |
ctgacttgatcgttggagtgctaacgtgcctgcaggcacttttcgt |
27846622 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 368
Target Start/End: Original strand, 28426194 - 28426231
Alignment:
| Q |
331 |
ggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
28426194 |
ggagtgctaatgtgcctgcaggcacctttcgttccacc |
28426231 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 213 - 432
Target Start/End: Complemental strand, 11714309 - 11714090
Alignment:
| Q |
213 |
aagtcgttagcgcctctttatcctgtctaagagtgatttcgcgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcc |
312 |
Q |
| |
|
||||||| ||||||| || |||| | |||| |||| | | ||||||| ||||||||| ||| |||||| | ||| ||||||||||| |||||||||||| |
|
|
| T |
11714309 |
aagtcgtcagcgccttcttctcctatataagggtgactccacgtcaccctcaaggtacaattcatttcccatacatttttacacattcaacctcatttcc |
11714210 |
T |
 |
| Q |
313 |
tactctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagaccgcaccaccgccgtgttggagcactgcacgccacca |
412 |
Q |
| |
|
||| | ||||| || ||||||||| |||||||||||| ||||||||||| |||| ||| |||||||| ||||| || |||| ||||||||| |
|
|
| T |
11714209 |
tacacagacttgagtgttggagtgtgaacgtgcctgcatgcacctttcgttgcaccgtgacatttgcaccaccaccgtgctgaagcaacacacgccaccg |
11714110 |
T |
 |
| Q |
413 |
ttgccttcatctgttcatta |
432 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
11714109 |
ttgccttcatccgttcatta |
11714090 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 33189665 - 33189595
Alignment:
| Q |
158 |
ctgcatcatacatgtggcctccaacagctccctgatgaggtgctgcatttcacagaagtcgttagcgcctc |
228 |
Q |
| |
|
||||||| |||| |||||||||||| ||| |||||||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
33189665 |
ctgcatcgtacacgtggcctccaacggctgcctgatgaggcgctgcatttcacggaagcagttagcgcctc |
33189595 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 377
Target Start/End: Complemental strand, 33189559 - 33189435
Alignment:
| Q |
253 |
gcgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcaga |
352 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||||||||||| | || ||||||| ||| ||| ||| ||| ||| |||||||| ||| |||| |
|
|
| T |
33189559 |
gcgtcaccatcaaggtacgattcatttcccacacacttttacacactaaatctcatttattacactggcttgagcattgcagtgctaatgtgtttgcaag |
33189460 |
T |
 |
| Q |
353 |
cacctttcgttccaccatgaagacc |
377 |
Q |
| |
|
|| | |||||||||| | ||||||| |
|
|
| T |
33189459 |
catccttcgttccactacgaagacc |
33189435 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 12449641 - 12449700
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
||||||| ||||| |||||||||||||||| |||||||||||||| |||||| |||||| |
|
|
| T |
12449641 |
ctgacttgagcgtcagagtgctaacgtgcctacagacacctttcgtcccaccacgaagac |
12449700 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 30681025 - 30680974
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
30681025 |
ctgacttgagcgttggagtgctaacgtgattgcagacacctttcgtcccacc |
30680974 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 34187332 - 34187281
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||| || ||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34187332 |
ctgacttgagtgttggtgtgctaacgtgtctgcagacacctttcgttccacc |
34187281 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 9292077 - 9292128
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||| |||||| | |||||||||||| ||||| |||||||||||||||| |
|
|
| T |
9292077 |
ctgacttgagcgttagcgtgctaacgtgcttgcaggcacctttcgttccacc |
9292128 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 19331738 - 19331789
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
19331738 |
ctgacttaagcgtcggagtactaacgtacctgcaagcacctttcgttccacc |
19331789 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 333 - 367
Target Start/End: Original strand, 12424388 - 12424422
Alignment:
| Q |
333 |
agtgctaacgtgcctgcagacacctttcgttccac |
367 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12424388 |
agtgctaacgtgcctgcaggcacctttcgttccac |
12424422 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 16343612 - 16343562
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccac |
367 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| |||| |||| ||||| |
|
|
| T |
16343612 |
ctgacttgagtgttggagtgctaacgtgcctgcaggcacccttcgctccac |
16343562 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 22497356 - 22497405
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttcca |
366 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
22497356 |
ctgacttgagcgtcggagtgctaacgtgtctgcaagcacctttcgttcca |
22497405 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 21)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 166 - 347
Target Start/End: Complemental strand, 39003342 - 39003157
Alignment:
| Q |
166 |
tacatgtggcctccaacagctccctgatgaggtgctgcatttcacagaagtcgttagcgcctcttt----atcctgtctaagagtgatttcgcgtcacct |
261 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||| | ||||||| |||||| |||||| |||| | ||| | | |||| |||||| ||| ||||| |
|
|
| T |
39003342 |
tacatgtgccctccaacggctccctaatgaggcaccgcatttcgcagaagatgttagcacctcctcctcgatcttatataagggtgattccgcatcaccc |
39003243 |
T |
 |
| Q |
262 |
tcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcct |
347 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||| |||| || || |||||| ||||||||||||| |
|
|
| T |
39003242 |
tcaaggtacgattaatttcccacacacttttacacattcaacttcatttcctacactgatttgagtgttggactgctaacgtgcct |
39003157 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 246 - 365
Target Start/End: Complemental strand, 1485481 - 1485362
Alignment:
| Q |
246 |
tgatttcgcgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgc |
345 |
Q |
| |
|
||||| ||||||||| |||||||| |||| |||||| |||| ||||||||||| | |||| ||||||| |||| || |||||| ||||||||||||| |
|
|
| T |
1485481 |
tgattccgcgtcaccctcaaggtatgattcatttccctcacatttttacacattccatctcaattcctacactgatttgagcgtttgagtgctaacgtgt |
1485382 |
T |
 |
| Q |
346 |
ctgcagacacctttcgttcc |
365 |
Q |
| |
|
||||| ||||| | |||||| |
|
|
| T |
1485381 |
ctgcatacaccctccgttcc |
1485362 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 26977773 - 26977722
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26977773 |
ctgacttgagcgttggagtgctaacgtgcctgcaggcacctttcgttccacc |
26977722 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 307
Target Start/End: Original strand, 5696723 - 5696875
Alignment:
| Q |
154 |
cttcctgcatcatacatgtggcctccaacagctccctgatgaggtgctgcatttcacagaagtcgttagcgcctctttatcctgtctaagagtgatttcg |
253 |
Q |
| |
|
||||||||||| | ||||||||||||||| |||| | ||||||| || |||||||||| || | ||||||||||| | ||| | |||| | |||| | |
|
|
| T |
5696723 |
cttcctgcatcgttcatgtggcctccaacggctctcggatgaggcgccgcatttcacataatttgttagcgcctcctccccctatataagggcgattctg |
5696822 |
T |
 |
| Q |
254 |
cgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctca |
307 |
Q |
| |
|
||||||| ||||||||||||| |||||| | |||| ||| |||||| ||||||| |
|
|
| T |
5696823 |
cgtcaccctcaaggtacgattcatttccca-acacgtttgcacattcaacctca |
5696875 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 4601545 - 4601596
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4601545 |
ctgacttgagcgtcggagtgctaacgtgcctgcagtcacctttcgttccacc |
4601596 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 301 - 366
Target Start/End: Complemental strand, 30732566 - 30732501
Alignment:
| Q |
301 |
aacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttcca |
366 |
Q |
| |
|
||||||||||||||| |||||| ||| ||||||||||||||||||||||| |||| | ||||||| |
|
|
| T |
30732566 |
aacctcatttcctacaatgacttgagcattggagtgctaacgtgcctgcaggcaccctccgttcca |
30732501 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 2141002 - 2141060
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaaga |
375 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| ||||||||||||| ||| |||||| |
|
|
| T |
2141002 |
ctgacttgagcgttggagtgctaagttgcctgcatacacctttcgttctaccgtgaaga |
2141060 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 14255089 - 14255147
Alignment:
| Q |
318 |
tgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
|||||| ||||||||||||||| ||||| ||||| |||| |||||||||||| |||||| |
|
|
| T |
14255089 |
tgacttgagcgttggagtgctatcgtgcttgcaggcacccttcgttccaccacgaagac |
14255147 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 16050426 - 16050384
Alignment:
| Q |
318 |
tgacttaagcgttggagtgctaacgtgcctgcagacacctttc |
360 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16050426 |
tgacttgagcgttggagtgctaacgtgcctgcagatacctttc |
16050384 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 8018995 - 8018923
Alignment:
| Q |
304 |
ctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
||||||||| | ||||||| ||||| | |||||||||||||||| ||| ||||||||| |||||| |||||| |
|
|
| T |
8018995 |
ctcatttcccatactgacttgagcgtcgtagtgctaacgtgcctgtagatacctttcgtcccaccacgaagac |
8018923 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 16522807 - 16522759
Alignment:
| Q |
318 |
tgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttcca |
366 |
Q |
| |
|
|||||| | ||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
16522807 |
tgacttgaacgttgaagtgctaacgtgccttcagacacctttcgttcca |
16522759 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 18246173 - 18246125
Alignment:
| Q |
320 |
acttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
|||| |||||||||||| |||||||| | |||||||||||||||||||| |
|
|
| T |
18246173 |
acttgagcgttggagtgttaacgtgcttacagacacctttcgttccacc |
18246125 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 16030428 - 16030369
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
||||||| ||| || || || ||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
16030428 |
ctgacttgagcatttgactgataacgtgcctgcagacacctttcattccaccgtgaagac |
16030369 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 21098903 - 21098954
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||| | ||| |||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
21098903 |
ctgacttgatcgtcggagtgctaatgtgcctgcagccacctttcgttccacc |
21098954 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 22414808 - 22414757
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| | |||||||||||||||| |
|
|
| T |
22414808 |
ctgacttgagcgtcagagtgctaacgtgcctgcgggcacctttcgttccacc |
22414757 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 25408129 - 25408078
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||| ||| |||||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
25408129 |
ctgacttgagcattggagtgctaacgtgtctgcaggcacctttcattccacc |
25408078 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 1659848 - 1659898
Alignment:
| Q |
318 |
tgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
|||||| |||||||||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
1659848 |
tgacttgagcgttggagtgataacgtgtatgtagacacctttcgttccacc |
1659898 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 376
Target Start/End: Original strand, 5459776 - 5459825
Alignment:
| Q |
327 |
cgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| |||||| |||||| |
|
|
| T |
5459776 |
cgttggagtgctaacgtacctgcatgcacctttcgtcccaccacgaagac |
5459825 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 360
Target Start/End: Original strand, 33101567 - 33101608
Alignment:
| Q |
319 |
gacttaagcgttggagtgctaacgtgcctgcagacacctttc |
360 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
33101567 |
gacttgagcgttggagtgctaacgtgcctgcatgcacctttc |
33101608 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 46016133 - 46016097
Alignment:
| Q |
331 |
ggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46016133 |
ggagtgctaacgtgcctgca-acacctttcgttccacc |
46016097 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 52565613 - 52565564
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttcca |
366 |
Q |
| |
|
||||||| ||||| ||||||||||||| |||||| |||||||||||||| |
|
|
| T |
52565613 |
ctgacttgagcgtcagagtgctaacgtgtctgcaggcacctttcgttcca |
52565564 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 284 - 368
Target Start/End: Original strand, 69248 - 69333
Alignment:
| Q |
284 |
cacactttt-acacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||||| ||||||| | |||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
69248 |
cacacttttcacacattccatctcatttcctacactgacttgagcgttggagtgctaacgtgcctgcaggcaccttttgttccacc |
69333 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 26348138 - 26348188
Alignment:
| Q |
318 |
tgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26348138 |
tgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
26348188 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 24546379 - 24546321
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24546379 |
ctgactttagcgt-ggagttctaacgtgcctgcagacacctttcgttccaccatgaagac |
24546321 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 368
Target Start/End: Complemental strand, 34443473 - 34443268
Alignment:
| Q |
163 |
tcatacatgtggcctccaacagctccctgatgaggtgctgcatttcacagaagtcgttagcgcctctttatcctgtctaagagtgatttcgcgtcacctt |
262 |
Q |
| |
|
|||||||||||||||||||| || || |||||||| | |||||||| |||| ||||| ||||| || |||| |||| | || | |||||||| | |
|
|
| T |
34443473 |
tcatacatgtggcctccaacggc-ccttgatgaggctccacatttcacggaagcagttagagcctcctttctctgtataagggcgactctgcgtcaccct |
34443375 |
T |
 |
| Q |
263 |
caaggtacgattta--tttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcagacacctttc |
360 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||||||||| ||| ||||||||||| ||||||| |||||| || ||||||||| || || ||||||| |
|
|
| T |
34443374 |
caaggtacaatttcattttcccacacacttttacacattcaacttcatttcctacactgacttgagcgtt-gaatgctaacgtaccaacacgaacctttc |
34443276 |
T |
 |
| Q |
361 |
gttccacc |
368 |
Q |
| |
|
|||||||| |
|
|
| T |
34443275 |
gttccacc |
34443268 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 25537430 - 25537387
Alignment:
| Q |
325 |
agcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
25537430 |
agcgttggagtgctaacgtgcttgcaggcacctttcgttccacc |
25537387 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 18803951 - 18803899
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacca |
369 |
Q |
| |
|
|||| |||| |||||||||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
18803951 |
ctgaattaatcgttggagtgctaacgtgtcttcaggcacctttcgttccacca |
18803899 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 376
Target Start/End: Complemental strand, 16621233 - 16621182
Alignment:
| Q |
325 |
agcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
||||||| |||| |||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
16621233 |
agcgttgaagtgttaacgtgcctacatacacctttcgttccaccgtgaagac |
16621182 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 364
Target Start/End: Original strand, 27083295 - 27083342
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttc |
364 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
27083295 |
ctgacttgagtgttggagtgctaacgtgtctgcagacacatttcgttc |
27083342 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 26163669 - 26163619
Alignment:
| Q |
316 |
tctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttcca |
366 |
Q |
| |
|
|||||||| |||||||||||||||| |||| |||| |||||||||||||| |
|
|
| T |
26163669 |
tctgacttgagcgttggagtgctaatgtgcatgcatgcacctttcgttcca |
26163619 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 17249417 - 17249462
Alignment:
| Q |
174 |
gcctccaacagctccctgatgaggtgctgcatttcacagaagtcgt |
219 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||| |||||||| |
|
|
| T |
17249417 |
gcctccaacggctccctgatgaggtgccgcgtttcacggaagtcgt |
17249462 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 318 - 369
Target Start/End: Original strand, 4483 - 4534
Alignment:
| Q |
318 |
tgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacca |
369 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4483 |
tgacttgagcgttggagtgctaacgtgcttgcagacacctttcgttccacca |
4534 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 23269279 - 23269228
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
23269279 |
ctgacttaagtgttggagtgctaacttgcctgtagacacctttcgttccacc |
23269228 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 15663498 - 15663547
Alignment:
| Q |
174 |
gcctccaacagctccctgatgaggtgctgcatttcacagaagtcgttagc |
223 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
15663498 |
gcctccaacggctccctgatgaggcgctgcatttcacggaagtcgttagc |
15663547 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 17927762 - 17927814
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacca |
369 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||| |||||| |
|
|
| T |
17927762 |
ctgacttaagcgttggagtgctaacgtgcatgcatgcacctttcgtcccacca |
17927814 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 22454275 - 22454350
Alignment:
| Q |
301 |
aacctcatttcctactctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||| ||||||||| ||| |||| | |||||||| ||||||| |
|
|
| T |
22454275 |
aacctcatttcctacactgacttgggcgttggagtgccaacgtgcctacaggcaccctccgttccactgtgaagac |
22454350 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 331 - 368
Target Start/End: Original strand, 4565465 - 4565502
Alignment:
| Q |
331 |
ggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4565465 |
ggagtgctaacatgcctgcagacacctttcgttccacc |
4565502 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 246 - 347
Target Start/End: Complemental strand, 8599982 - 8599882
Alignment:
| Q |
246 |
tgatttcgcgtcaccttcaaggtacgatttatttcctacacacttttacacatttaacctcatttcctactctgacttaagcgttggagtgctaacgtgc |
345 |
Q |
| |
|
||||||||||||| | ||| ||||||||| |||| || ||| |||| |||||| ||| | ||||||||| ||||||| |||||| ||||| |||||||| |
|
|
| T |
8599982 |
tgatttcgcgtcatcctcatggtacgattaattttctgcac-ttttttcacattcaactttatttcctacactgacttgagcgttcgagtgttaacgtgc |
8599884 |
T |
 |
| Q |
346 |
ct |
347 |
Q |
| |
|
|| |
|
|
| T |
8599883 |
ct |
8599882 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 30477674 - 30477629
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgt |
362 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
30477674 |
ctgacttgagcgttggagtgctaacgtgcatgcagacatctttcgt |
30477629 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 715 - 751
Target Start/End: Original strand, 3222360 - 3222396
Alignment:
| Q |
715 |
cacttgagtaaaacctaaattcataagccacaaaagc |
751 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3222360 |
cacttgagtaaaacctaaattcataagccactaaagc |
3222396 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 369
Target Start/End: Complemental strand, 15058059 - 15058016
Alignment:
| Q |
326 |
gcgttggagtgctaacgtgcctgcagacacctttcgttccacca |
369 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15058059 |
gcgttgtagtgctaacgtgcctgcatgcacctttcgttccacca |
15058016 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 367
Target Start/End: Original strand, 23497200 - 23497243
Alignment:
| Q |
324 |
aagcgttggagtgctaacgtgcctgcagacacctttcgttccac |
367 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||||||||| |
|
|
| T |
23497200 |
aagcgttggagtgctaacatgcgtgcagatacctttcgttccac |
23497243 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 14666898 - 14666948
Alignment:
| Q |
318 |
tgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
14666898 |
tgacttgatcgtcggagtgctaacgtgcctgcaggcaccttttgttccacc |
14666948 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 20055603 - 20055561
Alignment:
| Q |
326 |
gcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
20055603 |
gcgtcggagtactaacgtgcctgcagacacccttcgttccacc |
20055561 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 24507489 - 24507439
Alignment:
| Q |
318 |
tgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
|||||| | ||||||||| ||||||||| ||||||||||||||| |||||| |
|
|
| T |
24507489 |
tgacttgatcgttggagtactaacgtgcatgcagacacctttcgctccacc |
24507439 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 24576641 - 24576691
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccac |
367 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
24576641 |
ctgacttgagcgtcagagtgttaacgtgcctgcaggcacctttcgttccac |
24576691 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 10974 - 11024
Alignment:
| Q |
318 |
tgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacc |
368 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
10974 |
tgacttgagcgttggagtgctaacgtgcctgcatacaccttttgttccacc |
11024 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 317 - 364
Target Start/End: Complemental strand, 215305 - 215258
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttc |
364 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
215305 |
ctgacttgagcgttggattgctaacgtgcctgcagacaactttcgttc |
215258 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 10294 - 10340
Alignment:
| Q |
320 |
acttaagcgttggagtgctaacgtgcctgcagacacctttcgttcca |
366 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| |||||||||||||| |
|
|
| T |
10294 |
acttaagcgttggagtgctaatgtgcctacaggcacctttcgttcca |
10340 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 40829 - 40777
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccacca |
369 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
40829 |
ctgacttgagcgttggagtgctaacgtgcctgcatgcgcctttcgttctacca |
40777 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 10776 - 10835
Alignment:
| Q |
317 |
ctgacttaagcgttggagtgctaacgtgcctgcagacacctttcgttccaccatgaagac |
376 |
Q |
| |
|
||||||| | ||| ||||||||||| ||||| |||||||||||| |||||||| |||||| |
|
|
| T |
10776 |
ctgacttgaacgtcggagtgctaacatgcctacagacacctttcattccaccacgaagac |
10835 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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