View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20761_low_12 (Length: 223)
Name: NF20761_low_12
Description: NF20761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20761_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 4473564 - 4473785
Alignment:
| Q |
2 |
aaaatatacatgaatggcaacagaaacatgataaataaatatgcagatagatactgatatattaggtgagcgaattaaatgactacacaaatgtacatca |
101 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4473564 |
aaaatatacatgaatggccacagaaacatgataaataaatatgcagatagatactgatatattaggtgagcgaattaaatgactacacaaatgtacatca |
4473663 |
T |
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| Q |
102 |
atggccaatatatannnnnnnnaaagaatgaattgtcaaaattgttttgattaaatatcatctaacttcttcatccatccattctaaattatagtctatt |
201 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4473664 |
atggccaatatatattttttttaaagaatgaattgtcaaaattgttttgattaaatatcatctaacttcttcatccatccattctaaattatagtctatt |
4473763 |
T |
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| Q |
202 |
atattgtccaactcatgagctg |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
4473764 |
atattgtccaactcatgagctg |
4473785 |
T |
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