View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20761_low_4 (Length: 448)

Name: NF20761_low_4
Description: NF20761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20761_low_4
NF20761_low_4
[»] chr4 (3 HSPs)
chr4 (1-152)||(36286240-36286391)
chr4 (318-443)||(36286054-36286179)
chr4 (136-278)||(40823853-40823995)
[»] chr7 (12 HSPs)
chr7 (142-275)||(20284848-20284981)
chr7 (124-278)||(20243512-20243666)
chr7 (136-278)||(20263906-20264048)
chr7 (136-277)||(20168102-20168243)
chr7 (136-278)||(20303594-20303736)
chr7 (136-277)||(20279416-20279557)
chr7 (136-278)||(20289156-20289298)
chr7 (144-275)||(20294565-20294696)
chr7 (136-268)||(20231457-20231589)
chr7 (142-280)||(19939009-19939147)
chr7 (142-280)||(19970148-19970286)
chr7 (156-278)||(20273711-20273833)
[»] chr8 (15 HSPs)
chr8 (237-300)||(19348300-19348363)
chr8 (237-300)||(19379366-19379429)
chr8 (237-300)||(19500631-19500694)
chr8 (235-300)||(19454361-19454426)
chr8 (235-298)||(19551618-19551681)
chr8 (235-298)||(19581007-19581070)
chr8 (235-300)||(15943112-15943177)
chr8 (235-300)||(19407341-19407406)
chr8 (237-298)||(19526650-19526711)
chr8 (237-300)||(19415420-19415483)
chr8 (235-300)||(16006438-16006503)
chr8 (235-280)||(19149273-19149318)
chr8 (235-305)||(15963795-15963865)
chr8 (235-300)||(19187197-19187262)
chr8 (249-298)||(19399065-19399114)
[»] chr2 (5 HSPs)
chr2 (144-297)||(2707336-2707489)
chr2 (144-297)||(2723728-2723881)
chr2 (153-297)||(2745567-2745711)
chr2 (144-297)||(2717106-2717259)
chr2 (204-276)||(2712642-2712714)
[»] chr6 (2 HSPs)
chr6 (111-165)||(16872336-16872390)
chr6 (249-318)||(16654243-16654312)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 6e-78; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 36286391 - 36286240
Alignment:
Q  1 actgcatttaaaggtcaaatgtctatgctcttagtattttctactatatttgttggacaaagaggaaggcatatacttgctatgttccaataattcttct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36286391 actgcatttaaaggtcaaatgtctatgctcttagtattttctactatatttgttggacaaagaggaaggcatatacttgctatgttccaacaattcttct 36286292  T
Q  101 tgtcttgccattcacttcactgtctccaaataatttagccgtaccaaaatct 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36286291 tgtcttgccattcacttcactgtctccaaataatttagccgtaccaaaatct 36286240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 318 - 443
Target Start/End: Complemental strand, 36286179 - 36286054
Alignment:
Q  318 tctgcacaaataattcaaagaaattaagacttaaaaatgtgtaagacaaggtgagaacattatacaataaagaaaaatatctgaaccactaaagactcat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36286179 tctgcacaaataattcaaagaaattaagacttaaaaatgtgtaagacaaggtgagaacattatacaataaagaaaaaaatctgaaccactaaagactcat 36286080  T
Q  418 tagcatgtttcatttcctatgctact 443  Q
    ||||||||||||||||||||| ||||    
T  36286079 tagcatgtttcatttcctatgttact 36286054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 136 - 278
Target Start/End: Original strand, 40823853 - 40823995
Alignment:
Q  136 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 235  Q
    ||||| ||||||| ||||||||||| ||||||| | | || || ||||| |||||||| | ||||| |||||| |||||||| |  ||| |  || ||||    
T  40823853 tagccataccaaagtctgatatttttggattcaactcctcgtctaacaagatgttacttgtctttagatctctgtgtataattctcaatttggaagctct 40823952  T
Q  236 gtgaagatatagcaatcctcgagcaattccttcaattatgtta 278  Q
     |||||||| |||||||||||||| |||||||| || ||||||    
T  40823953 atgaagataaagcaatcctcgagctattccttctatgatgtta 40823995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 142 - 275
Target Start/End: Complemental strand, 20284981 - 20284848
Alignment:
Q  142 taccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaag 241  Q
    ||||||| ||||||||||| ||||||||| | ||||| ||||| |  ||||| ||||| ||||||||||| ||||| | || |||| |||||||||||||    
T  20284981 taccaaagtctgatatttttggattcagctcctcatctaacaagacattacttgccttcaaatctctatgaataattcttagtctagaatctctgtgaag 20284882  T
Q  242 atatagcaatcctcgagcaattccttcaattatg 275  Q
    |||||||||||||||||| |||||||| ||||||    
T  20284881 atatagcaatcctcgagctattccttcgattatg 20284848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 20243666 - 20243512
Alignment:
Q  124 ctccaaataatttagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaa 223  Q
    ||||||||| | |||||  |||||| ||||||||||| ||||||| | | ||||| ||||  |  ||||| ||||| ||||||||||| ||||| | ||     
T  20243666 ctccaaatattctagccagaccaaagtctgatatttttggattcaactcctcatctaacaggacattacttgccttcaaatctctatgaataattcttag 20243567  T
Q  224 tctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgtta 278  Q
     ||| |||||||||||||||||||||| ||||||||||||||||| || ||||||    
T  20243566 cctagaatctctgtgaagatatagcaaccctcgagcaattccttctatgatgtta 20243512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 136 - 278
Target Start/End: Complemental strand, 20264048 - 20263906
Alignment:
Q  136 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 235  Q
    ||||| ||||||| ||||||||||| ||||||| | | ||||| ||||  |  ||||| ||||| ||||||||||| ||||| | ||  ||| |||||||    
T  20264048 tagccataccaaagtctgatatttttggattcaactcctcatctaacagaacattacttgccttcaaatctctatgaataattcttagcctagaatctct 20263949  T
Q  236 gtgaagatatagcaatcctcgagcaattccttcaattatgtta 278  Q
    ||||||||||||||| ||||||||||||||||| || ||||||    
T  20263948 gtgaagatatagcaaccctcgagcaattccttctataatgtta 20263906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 136 - 277
Target Start/End: Original strand, 20168102 - 20168243
Alignment:
Q  136 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 235  Q
    ||||| ||||||| ||||||||||| ||||||| | | ||||| ||||| |  ||||| ||||| ||||||||||| ||||| | || |||  |||||||    
T  20168102 tagccataccaaattctgatatttttggattcaactcctcatctaacaagacattacttgccttcaaatctctatgaataattcttagtctggaatctct 20168201  T
Q  236 gtgaagatatagcaatcctcgagcaattccttcaattatgtt 277  Q
    ||| |||||||||||||| ||||| |||||||| ||||||||    
T  20168202 gtggagatatagcaatccacgagctattccttctattatgtt 20168243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 136 - 278
Target Start/End: Complemental strand, 20303736 - 20303594
Alignment:
Q  136 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 235  Q
    ||||| ||||||| || || ||||| ||||||||| | ||||| ||||| || ||||| | ||| |||||||| |||||||| | || |||  |||||||    
T  20303736 tagccataccaaagtcggaaatttttggattcagctcctcatctaacaagatattacttgtcttcaaatctctgtgtataattcttagtctcgaatctct 20303637  T
Q  236 gtgaagatatagcaatcctcgagcaattccttcaattatgtta 278  Q
    ||||||||| | ||||||||||||||||||||| || ||||||    
T  20303636 gtgaagatacaacaatcctcgagcaattccttctataatgtta 20303594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 277
Target Start/End: Complemental strand, 20279557 - 20279416
Alignment:
Q  136 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 235  Q
    ||||| ||||||| ||||||||||| ||||||||| | ||||| ||||  |  ||||| ||||| |||||||| || ||||| | || |||  |||||||    
T  20279557 tagccataccaaagtctgatatttttggattcagctcctcatctaacaggacattacttgccttcaaatctctgtgaataattcttagtctggaatctct 20279458  T
Q  236 gtgaagatatagcaatcctcgagcaattccttcaattatgtt 277  Q
    |||||||||||||||||| ||||| ||||||||  |||||||    
T  20279457 gtgaagatatagcaatccgcgagctattccttctgttatgtt 20279416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 278
Target Start/End: Complemental strand, 20289298 - 20289156
Alignment:
Q  136 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 235  Q
    ||||| ||||||| ||||||||||| ||||||| | | || || ||||| |||||||| | |||||||||||| |||||||| |  ||| |  |||||||    
T  20289298 tagccataccaaagtctgatattttgggattcaactcctcgtctaacaagatgttacttgtctttaaatctctgtgtataattctcaatttggaatctct 20289199  T
Q  236 gtgaagatatagcaatcctcgagcaattccttcaattatgtta 278  Q
     |||||||| |||||||||||||| ||||| || || ||||||    
T  20289198 atgaagataaagcaatcctcgagctattccatctataatgtta 20289156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 144 - 275
Target Start/End: Complemental strand, 20294696 - 20294565
Alignment:
Q  144 ccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagat 243  Q
    ||||| || |||||||| ||||||||| | ||||| ||||  |  ||||| ||||| ||||||||||| ||||| | ||  ||| |||||| ||||||||    
T  20294696 ccaaagtccgatatttttggattcagctcctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctcggtgaagat 20294597  T
Q  244 atagcaatcctcgagcaattccttcaattatg 275  Q
    | |||||||||||||| |||||||| ||||||    
T  20294596 acagcaatcctcgagctattccttctattatg 20294565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 268
Target Start/End: Complemental strand, 20231589 - 20231457
Alignment:
Q  136 tagccgtaccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctct 235  Q
    ||||| ||||||| ||||||||||| ||||||| |   ||||| ||||  |  ||||| ||||| ||| ||||||| ||||| | ||  ||| |||||||    
T  20231589 tagccataccaaagtctgatatttttggattcaacttctcatctaacaggacattacttgccttcaaacctctatgaataattcttagcctagaatctct 20231490  T
Q  236 gtgaagatatagcaatcctcgagcaattccttc 268  Q
    ||||||||||| ||| |||||||||||||||||    
T  20231489 gtgaagatataacaaccctcgagcaattccttc 20231457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 19939147 - 19939009
Alignment:
Q  142 taccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaag 241  Q
    ||||||| ||||||||||| ||||| ||| | | ||| | ||| || ||||| | ||| |||||||||||||||||   || |||  |||||||||| ||    
T  19939147 taccaaagtctgatatttttggattaagctcattatctagcaagatattacttggcttcaaatctctatgtataatttttagtctggaatctctgtgcag 19939048  T
Q  242 atatagcaatcctcgagcaattccttcaattatgttaaa 280  Q
    ||| | |||||||||||| |||||||| |||||| ||||    
T  19939047 atacaacaatcctcgagctattccttctattatgctaaa 19939009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 19970286 - 19970148
Alignment:
Q  142 taccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaag 241  Q
    ||||||| ||||||||||| ||||| ||| | | ||| | ||| || ||||| | ||| |||||||||||||||||   || |||  |||||||||| ||    
T  19970286 taccaaagtctgatatttttggattaagctcattatctagcaagatattacttggcttcaaatctctatgtataatttttagtctggaatctctgtgcag 19970187  T
Q  242 atatagcaatcctcgagcaattccttcaattatgttaaa 280  Q
    ||| | |||||||||||| |||||||| |||||| ||||    
T  19970186 atacaacaatcctcgagctattccttctattatgctaaa 19970148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 20273833 - 20273711
Alignment:
Q  156 attttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctc 255  Q
    ||||| ||||||||| | || || ||||| |  ||||| ||||| ||||||||||| ||||| | ||  ||  |||||||||||||||||| ||| ||||    
T  20273833 atttttggattcagctcctcgtctaacaagacattacttgccttcaaatctctatgaataattcttagcctggaatctctgtgaagatataacaaccctc 20273734  T
Q  256 gagcaattccttcaattatgtta 278  Q
    |||| |||||||| || ||||||    
T  20273733 gagctattccttctataatgtta 20273711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 19348363 - 19348300
Alignment:
Q  237 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 300  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||    
T  19348363 tgaagatagagcaatccttgagcaattccttctattatgttaaaacgcttcttccaatctagca 19348300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 19379429 - 19379366
Alignment:
Q  237 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 300  Q
    |||||||| ||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||    
T  19379429 tgaagatagagcaatccttgagcaattccttctattatgttgaaacgcttcttccaatctagca 19379366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 19500631 - 19500694
Alignment:
Q  237 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 300  Q
    |||||||| ||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||    
T  19500631 tgaagatagagcaatccttgagcaattccttctattatgttgaaacgcttcttccaatctagca 19500694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 19454426 - 19454361
Alignment:
Q  235 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 300  Q
    |||||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||||    
T  19454426 tgtgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctagca 19454361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 19551618 - 19551681
Alignment:
Q  235 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 298  Q
    |||||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  19551618 tgtgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctag 19551681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 19581070 - 19581007
Alignment:
Q  235 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 298  Q
    |||||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  19581070 tgtgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctag 19581007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 15943177 - 15943112
Alignment:
Q  235 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 300  Q
    ||||||||||||| |||||| |||| |||||||| |||||| |||| ||||| |||||||||||||    
T  15943177 tgtgaagatatagtaatccttgagcgattccttcgattatgctaaagcgcttattccaatctagca 15943112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 19407406 - 19407341
Alignment:
Q  235 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 300  Q
    |||||||||| || |||||| ||| ||||||||| |||| ||| ||||||||||||||||||||||    
T  19407406 tgtgaagatagagtaatccttgagaaattccttctattacgttgaaacgctttttccaatctagca 19407341  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 19526650 - 19526711
Alignment:
Q  237 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 298  Q
    |||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  19526650 tgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctag 19526711  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 19415483 - 19415420
Alignment:
Q  237 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 300  Q
    |||||||| || |||||| ||| ||||||||| |||||||| |||||||| |||||||||||||    
T  19415483 tgaagatagagtaatccttgagaaattccttcgattatgttgaaacgcttcttccaatctagca 19415420  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 16006503 - 16006438
Alignment:
Q  235 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 300  Q
    ||||||| || || |||||| ||||||||||||| |||||| ||||||| || |||||||||||||    
T  16006503 tgtgaaggtaaagtaatccttgagcaattccttctattatgctaaaacgtttgttccaatctagca 16006438  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 19149273 - 19149318
Alignment:
Q  235 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaa 280  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||    
T  19149273 tgtgaagatatagtaatccttgagcaattccttctattatgttaaa 19149318  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 15963795 - 15963865
Alignment:
Q  235 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagcattttt 305  Q
    ||||||| ||||| | |||| ||||||||||||| |||||| |||| || || |||||||||| |||||||    
T  15963795 tgtgaaggtatagtagtccttgagcaattccttcgattatgctaaagcgtttgttccaatctaacattttt 15963865  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 19187262 - 19187197
Alignment:
Q  235 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 300  Q
    ||||||| ||||| | |||| ||||||||||||| |||||| |||| || || |||||||||||||    
T  19187262 tgtgaaggtatagtagtccttgagcaattccttctattatgctaaagcgtttattccaatctagca 19187197  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 19399114 - 19399065
Alignment:
Q  249 aatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 298  Q
    |||||| ||| ||||||||| |||||||| |||||||| |||||||||||    
T  19399114 aatccttgagaaattccttctattatgttgaaacgcttcttccaatctag 19399065  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 297
Target Start/End: Original strand, 2707336 - 2707489
Alignment:
Q  144 ccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagat 243  Q
    |||||||| |||||||| |||||||   || |||| ||||| || ||||| | |||||  ||||||||||| || | ||||||  ||||||| |||||||    
T  2707336 ccaaaatcagatatttttggattcaattctccatccaacaagatattacttggctttaggtctctatgtattattcttaatcttgaatctctatgaagat 2707435  T
Q  244 atagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatcta 297  Q
    | ||||  |||||||  ||||||||||||||| | ||||| |||||||||||||    
T  2707436 aaagcagacctcgagagattccttcaattatggttaaacgttttttccaatcta 2707489  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 297
Target Start/End: Original strand, 2723728 - 2723881
Alignment:
Q  144 ccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagat 243  Q
    ||||| || |||||||| ||||||||  || |||| ||||| || ||||||| |||||  ||||||||||| || | ||||||  ||||||| |||||||    
T  2723728 ccaaagtcggatatttttggattcagttctccatccaacaaaatattactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagat 2723827  T
Q  244 atagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatcta 297  Q
    | |||| ||| ||||  ||||| ||||||||||  || || |||| ||||||||    
T  2723828 aaagcagtccgcgagagattccctcaattatgtataagcgtttttgccaatcta 2723881  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 297
Target Start/End: Original strand, 2745567 - 2745711
Alignment:
Q  153 gatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatc 252  Q
    |||||||| ||||||||  || |||| ||||| || ||||||| |||||  ||||||||||| || | ||||||  ||||||| |||||||| |||| ||    
T  2745567 gatatttttggattcagttctccatccaacaaaatattactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagataaagcagtc 2745666  T
Q  253 ctcgagcaattccttcaattatgttaaaacgctttttccaatcta 297  Q
    | ||||  ||||| ||||||||||  || || |||| ||||||||    
T  2745667 cgcgagagattccctcaattatgtataagcgtttttgccaatcta 2745711  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 297
Target Start/End: Original strand, 2717106 - 2717259
Alignment:
Q  144 ccaaaatctgatattttcggattcagcccttcatcgaacaatatgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagat 243  Q
    ||||| || |||||||| ||||||||  || |||| ||||| || |||||||  ||||  |||||||| || || | ||||||  ||||||| |||||||    
T  2717106 ccaaagtcggatatttttggattcagttctccatccaacaaaatattactcggttttaggtctctatggattattcttaatctcgaatctctatgaagat 2717205  T
Q  244 atagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatcta 297  Q
    | |||| ||| ||||  ||||||||||||||||  || || |||| ||||||||    
T  2717206 aaagcagtccgcgagagattccttcaattatgtataagcgtttttgccaatcta 2717259  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 2712642 - 2712714
Alignment:
Q  204 tctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgt 276  Q
    ||||||||||| || | ||||||  ||||||  |||||||| |||||||||||||  ||||| ||||||||||    
T  2712642 tctctatgtattattcttaatcttgaatctcgatgaagataaagcaatcctcgagagattccctcaattatgt 2712714  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 16872336 - 16872390
Alignment:
Q  111 ttcacttcactgtctccaaataatttagccgtaccaaaatctgatattttcggat 165  Q
    |||| ||||||||||||||||| ||||||| | | |||| |||||||||||||||    
T  16872336 ttcatttcactgtctccaaatattttagccattcgaaaacctgatattttcggat 16872390  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 16654312 - 16654243
Alignment:
Q  249 aatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagcattttttgtttatatggat 318  Q
    |||| ||||||||||||||||| ||||||||||| || || |||||||  ||| | ||||||| ||||||    
T  16654312 aatcttcgagcaattccttcaactatgttaaaacactattcccaatcttacatctgttgtttaaatggat 16654243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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