View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20762_high_16 (Length: 384)
Name: NF20762_high_16
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20762_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 13 - 366
Target Start/End: Complemental strand, 46942681 - 46942326
Alignment:
| Q |
13 |
aatatcaagtatagcaatgagactacattcttattgagattataaacaactttcatcattgattgaaatgaagaggtttcgaacattcttcatgaatcat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46942681 |
aatatcaagtatagcaatgagactacattcttattgagattataaacaactttcatcattgattgaaatgaagaggtttcaaacattcttcatgaatcat |
46942582 |
T |
|
| Q |
113 |
gatccatgtaannnnnnnn--atggaaggactttattccttttcttcgtacttgttaaaatgatctcctccgccttatcatttatgctaaccattttctt |
210 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46942581 |
gatccatgtaattttttttttatggaaggactttattccttttcttcgtacttgttaaaatgatctcctccgccatatcatttatgctaaccattttctt |
46942482 |
T |
|
| Q |
211 |
cgaagcttgatggcacaattcttcatcaacaatgttcctgcacagattattctcttcttcaacatgttctgtttgaggagaaagacgattatcacggaag |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46942481 |
cgaagcttgatggcacaattcttcatcaacaatgttcctgcacagattattctcttcttcaacatgttctgtttgaggagaaagacgattatcaccgaag |
46942382 |
T |
|
| Q |
311 |
aaatattgagattttcgaagctcattgctatttagacctatacaaggtgtcacatg |
366 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46942381 |
aaatatttagattttcgaagctcattgctatttagacctatacaaggtgtcacatg |
46942326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University