View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20762_high_17 (Length: 333)
Name: NF20762_high_17
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20762_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 3751405 - 3751701
Alignment:
| Q |
17 |
atgaacaacaacaactaaaaatcaatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagcttta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3751405 |
atgaacaacaacaactaaaaatcaatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagcttta |
3751504 |
T |
|
| Q |
117 |
gcatatcctctagcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3751505 |
gcatatcctctagcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtac |
3751604 |
T |
|
| Q |
217 |
taccattatactttccttcaatgaaagcaaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttcc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3751605 |
taccattatactttccttcaatgaaagcaaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttcc |
3751701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 3755275 - 3755568
Alignment:
| Q |
20 |
aacaacaacaactaaaaatcaatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagctttagca |
119 |
Q |
| |
|
|||||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| |||||||||||||||| |||||| |||| |
|
|
| T |
3755275 |
aacaacaataattaacaatcaatagtgaaaaacataaacattatactcaacaatagcatccccagatttgatatcaaaccaatgagtattagcttcagca |
3755374 |
T |
|
| Q |
120 |
tatcctctagcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactac |
219 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||| | ||||||||||||| | |||| || | ||| |||||| ||||| ||||||| |||||| | |
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|
| T |
3755375 |
taacctctagcaaatctgaaaaatccactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttc |
3755474 |
T |
|
| Q |
220 |
cattatactttccttcaatgaaagcaaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttcc |
313 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||||||| || ||| ||| ||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
3755475 |
cattatactttccttcagtaaaagcaaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttcc |
3755568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 3762387 - 3762680
Alignment:
| Q |
20 |
aacaacaacaactaaaaatcaatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagctttagca |
119 |
Q |
| |
|
|||||||| || ||| |||||||| |||||||||| || ||||||||||| | ||||| |||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
3762387 |
aacaacaaaaattaacaatcaataatgaaaaacatgaagattgtactcaatacatgcatccccagatttgagatcaacccaatgagtagtagcttgagca |
3762486 |
T |
|
| Q |
120 |
tatcctctagcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || ||||||||| ||| ||||||||| | | | ||||||||||||||||||||| ||||||| |
|
|
| T |
3762487 |
tatcctctagcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactac |
3762586 |
T |
|
| Q |
220 |
cattatactttccttcaatgaaagcaaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttcc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| | ||| |||||||| | || || |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
3762587 |
cattatactttccttcaatgaaagcaaaattcactgtcataagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagctcttcc |
3762680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 36 - 313
Target Start/End: Original strand, 3780797 - 3781074
Alignment:
| Q |
36 |
aatcaatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagctttagcatatcctctagcaaatc |
135 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||| |||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
3780797 |
aatcaatagtgaaaaacatgaacattgtactcaacacaagcatccccagttttgaaatcaatccaatgagtattagcttgagcatatcctctagcaaatc |
3780896 |
T |
|
| Q |
136 |
tgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttc |
235 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| ||| || |||||| ||| ||||||||| | |||||||| ||||||||||||||||||||||| |
|
|
| T |
3780897 |
tgaaaagtccactaccaccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttc |
3780996 |
T |
|
| Q |
236 |
aatgaaagcaaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttcc |
313 |
Q |
| |
|
|||||||||||| ||||| | ||| |||||||| | || |||||||| |||||||||||||| ||||||||| |||| |
|
|
| T |
3780997 |
aatgaaagcaaaattcattgtcataagaaaacctagttcttcttgtgaagcagatgcatagaatccttgagctcttcc |
3781074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 3776468 - 3776756
Alignment:
| Q |
20 |
aacaacaacaactaaaaatcaatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagctttagca |
119 |
Q |
| |
|
|||||||| || ||| ||||||||||||||||| | |||||||||||||||| |||||| |||| |||| ||||| ||||||||||||||||| |||| |
|
|
| T |
3776468 |
aacaacaataattaacaatcaatagtgaaaaacgtgaacattgtactcaacacaagcatccccagctttggcatcaatccaatgagtagtagcttcagca |
3776567 |
T |
|
| Q |
120 |
tatcctctagcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactac |
219 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| || |||||| || ||| |||||||| | || ||||||||||||||||||||| ||||||| |
|
|
| T |
3776568 |
taacctctagcaaatctgaaaagtccactaccaccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactac |
3776667 |
T |
|
| Q |
220 |
cattatactttccttcaatgaaagcaaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | ||| |||||||| | || || ||||| |||||||||||||| ||||||||| |
|
|
| T |
3776668 |
cattatactttccttcaatgaaagcaaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagct |
3776756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 40 - 313
Target Start/End: Original strand, 3766823 - 3767096
Alignment:
| Q |
40 |
aatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagctttagcatatcctctagcaaatctgaa |
139 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||| ||| ||||| ||||| | |||||||| |||||| |||||| ||||||||||||||||| |
|
|
| T |
3766823 |
aatagtgaaaaacatgaacattgtactcaacacaagcatcctcagatttgaaatcaatcgaatgagtattagcttcagcataacctctagcaaatctgaa |
3766922 |
T |
|
| Q |
140 |
aagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatg |
239 |
Q |
| |
|
|| ||||||||||||||| | ||||||||||||| | |||| || | ||| |||||| ||||| ||||||| |||||| |||||||||||||||||| | |
|
|
| T |
3766923 |
aactccactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttcagta |
3767022 |
T |
|
| Q |
240 |
aaagcaaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttcc |
313 |
Q |
| |
|
|||||||| ||||||||||| || ||| ||| ||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
3767023 |
aaagcaaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttcc |
3767096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 3745597 - 3745884
Alignment:
| Q |
20 |
aacaacaacaactaaaaatcaatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgaga-tcaaaccaatgagtagtagctttagc |
118 |
Q |
| |
|
|||||||| || ||| |||||||||| ||||||||||||||||||||||||| ||| |||| ||||| ||| | || ||| ||| || ||| |
|
|
| T |
3745597 |
aacaacaataattaacaatcaatagtaaaaaacataaacattgtactcaacagtagtatct-------tgagaatcatattgataagttttagtttgagc |
3745689 |
T |
|
| Q |
119 |
atatcctctagcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtacta |
218 |
Q |
| |
|
||| ||||| |||||||| ||| |||| ||||||||| ||||||||| || ||| ||||||||| | ||||||| ||||||||||||||||| ||||| |
|
|
| T |
3745690 |
atagcctcttgcaaatctaaaacgtccggtaccaccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactc |
3745789 |
T |
|
| Q |
219 |
ccattatactttccttcaatgaaagcaaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttcc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||| ||| ||||| | ||||||||||||||| || |||||||||||||| |
|
|
| T |
3745790 |
ccattatactttccttcaatgaaagcaaaagtcatagccatgaacaaactaaactcatcctttgatgcagatgcatacaacccttgagcttttcc |
3745884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 294
Target Start/End: Original strand, 3770596 - 3770840
Alignment:
| Q |
38 |
tcaatagtgaaaaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagctttagcatatcctctagcaaatctg |
137 |
Q |
| |
|
|||||| || |||||||||||||| ||||| |||| |||||| |||| ||||| |||||||||||||||| |||||| |||| |||||| |
|
|
| T |
3770596 |
tcaataatggaaaacataaacattatactcgacaacagcatccccagatttgatatcaaaccaatgagtattagcttcagca------------aatctg |
3770683 |
T |
|
| Q |
138 |
aaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaa |
237 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| | | |||| || | || |||||| ||||| ||||||| | |||| |||||||||||||||||| |
|
|
| T |
3770684 |
aaaagtccaataccaccaatcataggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatactttccttcag |
3770783 |
T |
|
| Q |
238 |
tgaaagcaaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcat |
294 |
Q |
| |
|
| ||| |||| ||||||||||| || ||| ||| ||||||| |||||||||||| |
|
|
| T |
3770784 |
taaaaacaaaattcatagccattagcaaatcaacttcatctttgcatgcagatgcat |
3770840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 254
Target Start/End: Original strand, 3788959 - 3789163
Alignment:
| Q |
49 |
aaacataaacattgtactcaacaatagcatctccagttttgagatcaaaccaatgagtagtagctttagcatatcctctagcaaatctgaaaagtccact |
148 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || ||| ||||| | | | |||| |||||| ||||||||| ||||||| || |||| |||||| |
|
|
| T |
3788959 |
aaacataaacattgtactcaattgtagcatctcctgtgttgggatcagaagagtaagtactagcttcagcatatcccttagcaaacctaaaaactccact |
3789058 |
T |
|
| Q |
149 |
accaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatgaaagcaaag |
248 |
Q |
| |
|
|||||||| | |||||| |||||| ||||||| || || |||| ||| || |||||||| || || ||||||||||||||||||| ||||||||| |
|
|
| T |
3789059 |
tccaccaatcacaggcatttctctaaccttattgttagcaacattcttcctgaa-atagtaatggtgcttccattatactttccttcaaacaaagcaaag |
3789157 |
T |
|
| Q |
249 |
ttcata |
254 |
Q |
| |
|
|||||| |
|
|
| T |
3789158 |
ttcata |
3789163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 3851416 - 3851558
Alignment:
| Q |
109 |
tagctttagcatatcctctagcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagt |
208 |
Q |
| |
|
|||||| ||||||||| ||||||||| ||||| ||| |||||||| || | ||||| ||||||| |||||| | | ||||| || ||||||| |
|
|
| T |
3851416 |
tagcttcagcatatcccttagcaaatcggaaaactccgctaccaccgatcacaggcaactctctaaccttatcgttcgcgacgttccttccagagatagt |
3851515 |
T |
|
| Q |
209 |
aattgtactaccattatactttccttcaatgaaagcaaagttc |
251 |
Q |
| |
|
||| ||||| ||||||||||||||||||| || ||||||||| |
|
|
| T |
3851516 |
aatggtactcccattatactttccttcaaacaaggcaaagttc |
3851558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 95 - 261
Target Start/End: Complemental strand, 25985657 - 25985491
Alignment:
| Q |
95 |
aaaccaatgagtagtagctttagcatatcctctagcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattc |
194 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||| |||||| |||||||||||||| |||||||| || ||| |||||| | | ||| |||| |
|
|
| T |
25985657 |
aaaccaatgagttctaagttgagcatatcctctagcaaatcggaaaagaccactaccaccaattataggcatttccctaaccttatcagaaacaggattc |
25985558 |
T |
|
| Q |
195 |
ctccccaagatagtaattgtactaccattatactttccttcaatgaaagcaaagttcatagccatga |
261 |
Q |
| |
|
|||||||| ||||| || || |||||||| ||||| |||||||| | |||||| ||||||||||||| |
|
|
| T |
25985557 |
ctccccaaaatagtgatggtgctaccattgtacttcccttcaattatagcaaaattcatagccatga |
25985491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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