View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20762_high_19 (Length: 325)
Name: NF20762_high_19
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20762_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 48965392 - 48965098
Alignment:
| Q |
16 |
gacatcatcgtacatcaagagccctgcattgtattgggcagagtaatgcatttgattcatgcacaaaataattgttgctccaagttcaggttttatgagt |
115 |
Q |
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| T |
48965392 |
gacatcatagtacatcaagagccctgcattgtattgggcagagtaatgaatttgattcatgcacaaaataattgttgcttcaagttcaggttttatgagt |
48965293 |
T |
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| Q |
116 |
cgctgacttgtttcttttttccgtagtgctgcatagcaaacgcaaaggccaatatgagtagaggcaacaggaattgcaatgtctttgtaacaaatcctga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48965292 |
cgctgacttgtttcttttttccgtagtgctgcatagcatacgcaaaggccaatatgagtagaggcaacaggaattgcaatgtctttgtaacaaatcctga |
48965193 |
T |
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| Q |
216 |
tgattgatccctaacactttgtgcctgtgtagatggtggtgaattgtgctcaacttttgttggaacggtggacgtgtcgacatggccaacaaagt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48965192 |
tgattgatccctaacactttgtgcctgtgtagatggtggtgaattgtgctcaacttttgttggaacggtggacgtgtcgacatggccaacaaagt |
48965098 |
T |
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