View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20762_high_3 (Length: 707)
Name: NF20762_high_3
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20762_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 284 - 694
Target Start/End: Complemental strand, 32773034 - 32772609
Alignment:
| Q |
284 |
aagatctgcatgaagtaaatcaactaaaacacatggaaaggtttcaactttatcatcatcatcaatggcatttccattaccaacttcatattcatctttc |
383 |
Q |
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| T |
32773034 |
aagatctgcatgaagtaaatcaactaaaacacatggaaaggtttcaactttatcatcatcatcaatgacatttccattaccaacttcat----------- |
32772946 |
T |
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| Q |
384 |
tcttcctcttcattggctacttgatcaacttcttcgtttattttactttcaatttcattgttttcctcactaccttgtgtttcactttcacaagtgctat |
483 |
Q |
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| T |
32772945 |
-------cttcattggctacttcatcaacttcttcgtttattttactttcaatttcattgttttcctcactaccttgtgtttcactttcacaaatgctat |
32772853 |
T |
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| Q |
484 |
cttcttgtgatactctttcaacttctactacttgttttgtttcttct---------------tcaatgttgtaaccttgttctacttcttgttccacttc |
568 |
Q |
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| T |
32772852 |
ctacttgtgatactctttcaacttctactacttgttttgtttcttcttcaacttgctccatttcaatgttgtaaccttgttctacttcttgttccacttc |
32772753 |
T |
|
| Q |
569 |
atgttccacatctacactatcctcatcttgtgcttgttctaca------------------tcttcaacttggtcttgttctttgtgaagaggtgattcc |
650 |
Q |
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| T |
32772752 |
atgttccacatctacactatcctcatcttgtgcttgttctacatcttcaatttgatgatgttcttcaacttggtcttgttctttgtgaagaggtgattcc |
32772653 |
T |
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| Q |
651 |
caaaaacggttagctaaagcagccattttaacaggatcagatct |
694 |
Q |
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| T |
32772652 |
caaaaacggttagctaaagcagccattttaacaggatcagatct |
32772609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 32773270 - 32773211
Alignment:
| Q |
48 |
gacccattctcttgctccggtaacacgacaagacctacttccgggtcgggtccttgatgg |
107 |
Q |
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| T |
32773270 |
gacccattctcttgctccggtaacacgacaagacctacttccgggtcgggttcttgatgg |
32773211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 677
Target Start/End: Original strand, 28419529 - 28419586
Alignment:
| Q |
620 |
ttggtcttgttctttgtgaagaggtgattcccaaaaacggttagctaaagcagccatt |
677 |
Q |
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| T |
28419529 |
ttggtcttgttttttatgaagaggcgattcccaaaaacaattagccaaagcagccatt |
28419586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 677
Target Start/End: Original strand, 232903 - 232960
Alignment:
| Q |
620 |
ttggtcttgttctttgtgaagaggtgattcccaaaaacggttagctaaagcagccatt |
677 |
Q |
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| T |
232903 |
ttggtcttgttttttatgaagaggcgattcccaaaaacaattagccaaagcagccatt |
232960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 677
Target Start/End: Original strand, 50810155 - 50810212
Alignment:
| Q |
620 |
ttggtcttgttctttgtgaagaggtgattcccaaaaacggttagctaaagcagccatt |
677 |
Q |
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| T |
50810155 |
ttggtcttgttttttatgaagaggcgattcccaaaaacaattagccaaagcagccatt |
50810212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 677
Target Start/End: Complemental strand, 50865707 - 50865650
Alignment:
| Q |
620 |
ttggtcttgttctttgtgaagaggtgattcccaaaaacggttagctaaagcagccatt |
677 |
Q |
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| T |
50865707 |
ttggtcttgttttttatgaagaggcgattcccaaaaacaattagccaaagcagccatt |
50865650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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