View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20762_high_34 (Length: 238)
Name: NF20762_high_34
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20762_high_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 11452368 - 11452580
Alignment:
| Q |
18 |
ctcatcaatgtcaaatttcctcattactacgattgtagaacccaatgacaataatcctgtagcaaagagcgataaaccatatatatggaacatcggcaaa |
117 |
Q |
| |
|
||||||||||||| ||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||| |
|
|
| T |
11452368 |
ctcatcaatgtcatatttccttattacaacgattgtagaacccagtgacaataatccggtagcaaagagcgctaaaccatataaatggaacataggcaaa |
11452467 |
T |
|
| Q |
118 |
acagctagacacacattcttggaactagagtattcatatcgagaagcttccagcctctcaaaaacatcaaccatagcaataagatttctatgagttaaaa |
217 |
Q |
| |
|
||||||||| |||| |||||||||||||||| |||||| |||||||||| | |||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11452468 |
acagctagatgcacagtcttggaactagagtaatcatattgagaagcttcaaacctcacaaaaagctcaaccatagcaataagatttctatgagttaaaa |
11452567 |
T |
|
| Q |
218 |
caactcctttgct |
230 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11452568 |
caactcctttgct |
11452580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 11441831 - 11442043
Alignment:
| Q |
18 |
ctcatcaatgtcaaatttcctcattactacgattgtagaacccaatgacaataatcctgtagcaaagagcgataaaccatatatatggaacatcggcaaa |
117 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||||||||||||||| |
|
|
| T |
11441831 |
ctcatcaatgtcaaatttccgcattacaacgattgtagaacccaatgacaataatcccgtagcaaatagagataaaccatataaatggaacatcggcaaa |
11441930 |
T |
|
| Q |
118 |
acagctagacacacattcttggaactagagtattcatatcgagaagcttccagcctctcaaaaacatcaaccatagcaataagatttctatgagttaaaa |
217 |
Q |
| |
|
||| ||||| ||||||| ||||||||||||||||||||| ||||||||| | ||| | ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11441931 |
acatctagatacacatttttggaactagagtattcatatttagaagcttcaaaccttgccgaaagctcaaccatagcaataagatttctatgagttaaaa |
11442030 |
T |
|
| Q |
218 |
caactcctttgct |
230 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11442031 |
caactcctttgct |
11442043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 29912416 - 29912211
Alignment:
| Q |
22 |
tcaatgtcaaatttcctcattactacgattgtagaacccaatgacaataatcctgtagcaaagagcgataaaccatatatatggaacatcggcaaaacag |
121 |
Q |
| |
|
||||||||||||||||||||||| | || |||||| ||||| ||||| ||||| | ||||||||||||||||||||| | ||| ||||| |||||||||| |
|
|
| T |
29912416 |
tcaatgtcaaatttcctcattacaatgactgtagagcccaacgacaacaatcccgcagcaaagagcgataaaccatacacatgaaacattggcaaaacag |
29912317 |
T |
|
| Q |
122 |
ctagacacacattcttggaactagagtattcatatcgagaagcttccagcctctcaaaaacatcaaccatagcaataagatttctatgagttaaaacaac |
221 |
Q |
| |
|
||||| ||||| ||||||||| |||||| |||||| |||||||||| | ||| |||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29912316 |
ctagaaacacactcttggaacaagagtaatcatattgagaagcttcaaatctcacaaaaagctcaaccatagaaataagatttctatgagttaaaacaac |
29912217 |
T |
|
| Q |
222 |
tccttt |
227 |
Q |
| |
|
|||||| |
|
|
| T |
29912216 |
tccttt |
29912211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University