View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20762_low_10 (Length: 433)
Name: NF20762_low_10
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20762_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 11 - 418
Target Start/End: Complemental strand, 7716014 - 7715607
Alignment:
| Q |
11 |
catagggagaagaaggagaaagaaaaatcaaaggatccaaattctataatatcatcaaccaaagtgctacacaaaaataacatataccaagatgccacgt |
110 |
Q |
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| T |
7716014 |
catagggagaagaaggagaaagaaaaatcaaaggatccaaattctataatatcatcaaccaaagtgctacacaaaaataacatataccaagatgccacgt |
7715915 |
T |
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| Q |
111 |
gggtatcgtggaaggatttcttatactgcatgcatgcaaatgtattcaacatatttttattagaaatgtcatgtggagtagtataaaacaaacaacacaa |
210 |
Q |
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| T |
7715914 |
gggtatcgtggaaggatttcttatactgcatgcatgcaaatgtattcaacatatttttattagaaatgtcatgtggagtagtataaaacaaacaacacaa |
7715815 |
T |
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| Q |
211 |
ttattactaaaataaactttgggaacgaataaaattgcattcctcaaaagcaacaacatacaactggaatgtttgtcttagtaggggttagggatatttt |
310 |
Q |
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| T |
7715814 |
ttattactaaaataaactttgggaacgaataaaattgcattcctcaaaagcaacaacatacaactggaatgtttgtcttagtaggggttagggatatttt |
7715715 |
T |
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| Q |
311 |
tatttttccttttgggttcaaattagatcccatcgagaccatacacctttttagcttggtaaattgggattttagtggtccagttattatgttgttgacg |
410 |
Q |
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| T |
7715714 |
tatttttccttttgggttcaaattagatcccatcgagaccatacacctttttagcttggtaaattgggattttagtggtccagttattatgttgttgacg |
7715615 |
T |
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| Q |
411 |
gggatatt |
418 |
Q |
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| T |
7715614 |
gggatatt |
7715607 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 32961034 - 32961101
Alignment:
| Q |
222 |
ataaactttgggaacgaataaaattgcattcctcaaaagcaacaacatacaactggaatgtttgtctt |
289 |
Q |
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| T |
32961034 |
ataaacttcgggaacacataaaattatattcctcaaaagcaacaagatacaactggaatgtctgtctt |
32961101 |
T |
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