View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20762_low_13 (Length: 408)
Name: NF20762_low_13
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20762_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 38333791 - 38333420
Alignment:
| Q |
20 |
gtaatcactgcagtcatttacttcaccaccttgttgctgaattggttgccaatgtcccctaacatgataaataatacaaaatttaataaagtgatgaaaa |
119 |
Q |
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| T |
38333791 |
gtaatcactgcagtcatttacttcaccaccttgttgctgaattggttgccaatgtcccctaacatgataaataatacaaaatttaataaagtgatgaca- |
38333693 |
T |
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| Q |
120 |
acaaacatagtagtttaaggttcatgttttgctttaacataccttgaggtggaataatcaacatattgttgagtggtggaaatgctcaatccaaggttaa |
219 |
Q |
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| T |
38333692 |
-caaacatagtagtttaaggttcatgttttgctttaacataccttgaggtggaataatcaacatattgttgagtggtggaaatgctcaatccaaggttaa |
38333594 |
T |
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| Q |
220 |
gatcaggaaaaagatgttgttgatcaggattttggtgagtgatggaggatgaaacattagaggaattatgtttccttcttctactgttggaagaggagga |
319 |
Q |
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| T |
38333593 |
gatcaggaaaaagatgttgttgatcaggattttggtgagtgatggaggatgaaacattagaggaattatgtttccttcttctactgttggaagaggagga |
38333494 |
T |
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| Q |
320 |
agaagaagtggaaccttttcccattgtggaaatgtagaatttggtaaagaatattgtagtagtaagaagaataa |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38333493 |
agaagaagtggaaccttttcccattgtggaaatgtagaatttggtaaagaatattgtagtagtaagaagaataa |
38333420 |
T |
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