View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20762_low_15 (Length: 404)

Name: NF20762_low_15
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20762_low_15
NF20762_low_15
[»] chr1 (1 HSPs)
chr1 (10-388)||(38050311-38050691)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 388
Target Start/End: Complemental strand, 38050691 - 38050311
Alignment:
Q  10 attattcttgacacaaaaattggtctgtttctttatactattgtttaatggttttgctggtaggtttatgtgtcatatctttaactgctccttccttctt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38050691 attattcttgacacaaaaattggtctgtttctttatactattgtttaatggttttgctggtaggtttatgtgtcatatctttaactgctccttccttctt 38050592  T
Q  110 gtcttttctaatggcgttagcatactatagaagaattgattcagaaattgatcttagtggttacgtgcagctctaaggttttaaatatattaatcattat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38050591 gtcttttctaatggcgttagcatactatagaagaattgattcagaaattgatcttagtggttgcgtgcagctctaaggttttaaatatattaatcattat 38050492  T
Q  210 taggtttttatattgccannnnnnnnnnnnnnnnnnnnccaaagatcttagagcaaagaatctcgggttcaaac--gcgacccaacatatcaattgtcac 307  Q
    ||||||||||||||||||                    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  38050491 taggtttttatattgccattttttttttctttctttttccaaagatcttagagcaaagaatctcgggttcaaacctgcgacccaacatatcaattgtcac 38050392  T
Q  308 taaagagtatttacatttaagttgtatattgggaggttgaattggacttaaatttcttaagcaaagatttaggtttgaact 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38050391 taaagagtatttacatttaagttgtatattgggaggttgaattggacttaaatttcttaagcaaagatttaggtttgaact 38050311  T

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