View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20762_low_18 (Length: 331)

Name: NF20762_low_18
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20762_low_18
NF20762_low_18
[»] chr6 (1 HSPs)
chr6 (11-210)||(22082862-22083061)
[»] chr3 (4 HSPs)
chr3 (11-210)||(19768169-19768368)
chr3 (11-206)||(29199687-29199879)
chr3 (18-148)||(12572307-12572437)
chr3 (18-148)||(13548771-13548901)
[»] chr4 (1 HSPs)
chr4 (11-210)||(37616919-37617113)
[»] chr1 (1 HSPs)
chr1 (54-210)||(51389585-51389734)
[»] chr7 (1 HSPs)
chr7 (92-210)||(32662990-32663108)
[»] chr5 (1 HSPs)
chr5 (54-148)||(4351699-4351793)
[»] chr8 (1 HSPs)
chr8 (109-183)||(770389-770463)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 22082862 - 22083061
Alignment:
Q  11 ttatactgcattatgtgttttgtttatgtaagnnnnnnnnctccgctgctacttcaaattcaggtatgccttcaatgtttctgtttggccattttgtgcg 110  Q
    ||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22082862 ttatactgcattatgtgttttgtttatgtaagttttttttctccgctgctacttcaaattcaggtatgccttcaatgtttctgttttgccattttgtgcg 22082961  T
Q  111 ataggctttgttcattcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22082962 ataggctttgttcattcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttaggacttctcatgtataaatagggacc 22083061  T

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Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 19768169 - 19768368
Alignment:
Q  11 ttatactgcattatgtgttttgtttatgtaagnnnnnnnnctccgctgctacttcaaattcaggtatgccttcaatgtttctgtttggccattttgtgcg 110  Q
    ||||||||||||||||||||||||||||||||        ||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  19768169 ttatactgcattatgtgttttgtttatgtaagtttttttcctctgctgctacttcaaattcaggtctgccttcaatgtttctgtttagccattttgtgcg 19768268  T
Q  111 ataggctttgttcattcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19768269 ataggctttgttcattcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttaggacttctcatgtataaatagggacc 19768368  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 206
Target Start/End: Original strand, 29199687 - 29199879
Alignment:
Q  11 ttatactgcattatgtgttttgtttatgtaagnnnnnnnnctccgctgctacttcaaattcaggtatgccttcaatgtttctgtttggccattttgtgcg 110  Q
    |||| |||||||||||||||||||||||||||         ||| |||||||||||||||||||  ||| ||| |||||||||||| ||||||||||  |    
T  29199687 ttatgctgcattatgtgttttgtttatgtaagtttttt---tcctctgctacttcaaattcaggcctgctttcgatgtttctgtttagccattttgtagg 29199783  T
Q  111 ataggctttgttcattcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagg 206  Q
    ||| |||||||||||| ||||||||||||||| |||||  |||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||    
T  29199784 atatgctttgttcatttaattttactctttgcgtaatcgttgttgcatgcttgaatccatgactctcttctttaggacttctcatgtataaatagg 29199879  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 12572437 - 12572307
Alignment:
Q  18 gcattatgtgttttgtttatgtaagnnnnnnnnctccgctgctacttcaaattcaggtatgccttcaatgtttctgtttggccattttgtgcgataggct 117  Q
    ||||| |||||||||||||||||||        || |||||||||||||||||||||| |||||||||| ||||| ||| ||||||||||   |||  ||    
T  12572437 gcattgtgtgttttgtttatgtaagttttttgcctgcgctgctacttcaaattcaggtctgccttcaatttttctttttagccattttgtatcatatact 12572338  T
Q  118 ttgttcattcaattttactctttgcctaatc 148  Q
    ||||| ||||||||||| |||||||| ||||    
T  12572337 ttgttgattcaattttaatctttgcccaatc 12572307  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 13548901 - 13548771
Alignment:
Q  18 gcattatgtgttttgtttatgtaagnnnnnnnnctccgctgctacttcaaattcaggtatgccttcaatgtttctgtttggccattttgtgcgataggct 117  Q
    ||||| |||||||||||||||||||        || |||||||||||||||||||||| |||||||||| ||||| ||| ||||||||||   |||  ||    
T  13548901 gcattgtgtgttttgtttatgtaagttttttgcctgcgctgctacttcaaattcaggtctgccttcaatttttctttttagccattttgtatcatatact 13548802  T
Q  118 ttgttcattcaattttactctttgcctaatc 148  Q
    ||||| ||||||||||| |||||||| ||||    
T  13548801 ttgttgattcaattttaatctttgcccaatc 13548771  T

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Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 37617113 - 37616919
Alignment:
Q  11 ttatactgcattatgtgttttgtttatgtaagnnnnnnnnctccgctgctacttcaaattcaggtatgccttcaatgtttctgtttggccattttgtgcg 110  Q
    ||||||||||||||||||||||||||||||||        |||||||||||||||||     ||| |||||||||||||||||||| |||||||||||||    
T  37617113 ttatactgcattatgtgttttgtttatgtaagtttttttcctccgctgctacttcaa-----ggtctgccttcaatgtttctgtttagccattttgtgcg 37617019  T
Q  111 ataggctttgttcattcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc 210  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37617018 ataggcttttttcattcaattttactctttgcctaatttgtgttgcatgcatgaatccatgtctctcttctttaggacttctcatgtataaatagggacc 37616919  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 210
Target Start/End: Complemental strand, 51389734 - 51389585
Alignment:
Q  54 cgctgctacttcaaattcaggtatgccttcaatgtttctgtttggccattttgtgcgataggctttgttcattcaattttactctttgcctaatctgtgt 153  Q
    |||||||||||||| |||| || ||||||   ||||||||||| ||| ||||||||||||| |||||||| |||||||||       ||||| ||  |||    
T  51389734 cgctgctacttcaatttcaagtctgcctttggtgtttctgtttagccgttttgtgcgatagactttgttcgttcaatttt-------gcctattcattgt 51389642  T
Q  154 tgcatgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc 210  Q
    ||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||    
T  51389641 tgcatgcttgaatccatgaccctcttctttaggacttctcatgtataaatagggacc 51389585  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 32662990 - 32663108
Alignment:
Q  92 tgtttggccattttgtgcgataggctttgttcattcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttctttgggacttc 191  Q
    ||||| ||| |||||| ||||||  |||||||||||| ||||||||||| || ||||  |||||||||| ||||| |||  | ||||| ||| |||||||    
T  32662990 tgtttagccgttttgtacgatagagtttgttcattcagttttactcttttcccaatcattgttgcatgcgtgaattcattaccctcttgtttaggacttc 32663089  T
Q  192 tcatgtataaatagggacc 210  Q
    |||||||||||||||||||    
T  32663090 tcatgtataaatagggacc 32663108  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 4351699 - 4351793
Alignment:
Q  54 cgctgctacttcaaattcaggtatgccttcaatgtttctgtttggccattttgtgcgataggctttgttcattcaattttactctttgcctaatc 148  Q
    ||||||||||||||||| |||| ||||||| || ||||| ||| ||||||||||   |||  ||||||| ||||||||||| |||||||| ||||    
T  4351699 cgctgctacttcaaatttaggtctgccttcgatttttctttttagccattttgtatcatatactttgttgattcaattttaatctttgcccaatc 4351793  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 770389 - 770463
Alignment:
Q  109 cgataggctttgttcattcaattttactctttgcctaatctgtgttgcatgcatgaatccatgtctctcttcttt 183  Q
    |||||| ||||||  ||||||||||||| |||||||||||  |||||||||  |||||||||| | |||||||||    
T  770389 cgatagactttgtctattcaattttactatttgcctaatcgttgttgcatgtttgaatccatgaccctcttcttt 770463  T

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