View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20762_low_20 (Length: 321)

Name: NF20762_low_20
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20762_low_20
NF20762_low_20
[»] chr1 (4 HSPs)
chr1 (32-228)||(23314873-23315069)
chr1 (37-225)||(39208872-39209062)
chr1 (37-225)||(50445989-50446179)
chr1 (229-305)||(14756807-14756883)
[»] chr3 (6 HSPs)
chr3 (32-225)||(17712549-17712742)
chr3 (32-225)||(19013806-19013999)
chr3 (127-191)||(7237778-7237842)
chr3 (130-204)||(32391450-32391524)
chr3 (130-231)||(22513922-22514022)
chr3 (152-197)||(37508288-37508333)
[»] chr4 (1 HSPs)
chr4 (130-233)||(8972973-8973075)
[»] chr6 (1 HSPs)
chr6 (127-191)||(22501880-22501944)
[»] chr5 (2 HSPs)
chr5 (127-191)||(42838128-42838192)
chr5 (130-215)||(31698259-31698344)
[»] chr7 (3 HSPs)
chr7 (139-224)||(11604889-11604974)
chr7 (127-191)||(24768349-24768413)
chr7 (145-197)||(36962986-36963038)
[»] chr2 (1 HSPs)
chr2 (145-197)||(16767895-16767947)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 23315069 - 23314873
Alignment:
Q  32 tagcaagagggggttggaggaggaagagggcaaagagagaacgagaacagagttctctgagattgagaaagaatgaaaaaacagatccaaaattccaatt 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23315069 tagcaagagggggttggaggaggaagagggcaaagagagaacgagaacagagttctctgagattgagaaagaatgaaaaaacagatccaaaattccaatt 23314970  T
Q  132 ttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattttcc 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23314969 ttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattttcc 23314873  T

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Target: chr1; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 37 - 225
Target Start/End: Original strand, 39208872 - 39209062
Alignment:
Q  37 agagggggttggaggaggaagagggcaaagagagaacgagaacagagttctctgagattgagaaagaatgaaaaaacagatcca--aaattccaatttta 134  Q
    |||||| |||||||||||||||||| |||||||||| |||||||||||| | |||||||||||||||||||||||||||||     ||||||||||||||    
T  39208872 agagggtgttggaggaggaagagggtaaagagagaatgagaacagagttatgtgagattgagaaagaatgaaaaaacagatatttgaaattccaatttta 39208971  T
Q  135 ccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattt 225  Q
    ||| ||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39208972 ccccttgttttttaacaaaattatagagatgtcatccacataggcaggtgtacaagaatggtattgaaaagggtgtgtctaccaataattt 39209062  T

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Target: chr1; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 37 - 225
Target Start/End: Complemental strand, 50446179 - 50445989
Alignment:
Q  37 agagggggttggaggaggaagagggcaaagagagaacgagaacagagttctctgagattgagaaagaatgaaaaaacagatcca--aaattccaatttta 134  Q
    |||||| |||||||||||||||||| |||||||||| |||||||||||| | |||||||||||||||||||||||||||||     ||||||||||||||    
T  50446179 agagggtgttggaggaggaagagggtaaagagagaatgagaacagagttttgtgagattgagaaagaatgaaaaaacagatatttgaaattccaatttta 50446080  T
Q  135 ccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattt 225  Q
    ||| ||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50446079 ccccttgttttttaacaaaattatagagatgtcatccacataggcaggtgtacaagaatggtattgaaaagggtgtgtctaccaataattt 50445989  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 14756807 - 14756883
Alignment:
Q  229 tttttgtttttcgtatatgtacacatatactaaacattttccttatatatacatagcatccctacattcagtatttg 305  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14756807 tttttctttttcgtatatgtacacatatactaaacattttccttatatatacatagcatccccacattcagtatttg 14756883  T

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Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 17712742 - 17712549
Alignment:
Q  32 tagcaagagggggttggaggaggaagagggcaaagagagaacgagaacagagttctctgagattgagaaagaatgaaaaaacagatccaaaattccaatt 131  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17712742 tagcaagagggggttggaggaggaagagggtaaagagagaacgagaacagagttctctgagattgagaaagaatgaaaaaacagattcaaaattccaatt 17712643  T
Q  132 ttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattt 225  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17712642 ttacccttttctttttaacaaaattacagagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattt 17712549  T

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Target: chr3; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 19013999 - 19013806
Alignment:
Q  32 tagcaagagggggttggaggaggaagagggcaaagagagaacgagaacagagttctctgagattgagaaagaatgaaaaaacagatccaaaattccaatt 131  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19013999 tagcaagagggggttggaggaggaagagggtaaagagagaacgagaacagagttctctgagattgagaaagaatgaaaaaacagattcaaaattccaatt 19013900  T
Q  132 ttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattt 225  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19013899 ttacccttttctttttaacaaaattacagagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattt 19013806  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 7237778 - 7237842
Alignment:
Q  127 caattttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaaga 191  Q
    ||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  7237778 caattttaccccttcctttttaacaaaattacaaagctgccatccacatgggcaggtgtataaga 7237842  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 32391524 - 32391450
Alignment:
Q  130 ttttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaa 204  Q
    |||| ||| |||||||||||||||||||||||| |||||||||  | |||||||||||||| | |||||||||||    
T  32391524 ttttgccccttgctttttaacaaaattacaaagttgccatccatgttggcaggtgtacaaggaaggtattgaaaa 32391450  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 22514022 - 22513922
Alignment:
Q  130 ttttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattttcct 229  Q
    |||| ||| |||||||||||||||||||||||| |||||||||  | ||||||||||||||   ||||||||||| || ||||||||  |||||| ||||    
T  22514022 ttttgccccttgctttttaacaaaattacaaagttgccatccatgttggcaggtgtacaagggaggtattgaaaaagg-atgtctactgataattatcct 22513924  T
Q  230 tt 231  Q
    ||    
T  22513923 tt 22513922  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 37508288 - 37508333
Alignment:
Q  152 aaattacaaagatgccatccacataggcaggtgtacaagaatggta 197  Q
    ||||||||||  |||||||||||| ||||||||||||||| |||||    
T  37508288 aaattacaaaactgccatccacatgggcaggtgtacaagagtggta 37508333  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 8973075 - 8972973
Alignment:
Q  130 ttttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattttcct 229  Q
    |||| ||| |||||||||||||||||||||||| |||||||||| | |||||||||||||| | ||||||||||| || ||||| ||  |||||| ||||    
T  8973075 ttttgccccttgctttttaacaaaattacaaagttgccatccacgttggcaggtgtacaaggaaggtattgaaaaagg-atgtccactgataattatcct 8972977  T
Q  230 tttt 233  Q
    ||||    
T  8972976 tttt 8972973  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 22501944 - 22501880
Alignment:
Q  127 caattttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaaga 191  Q
    ||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  22501944 caattttaccccttcctttttaacaaaattacaaagctgccatccacatgggcaggtgtataaga 22501880  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 42838192 - 42838128
Alignment:
Q  127 caattttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaaga 191  Q
    ||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  42838192 caattttaccccttcctttttaacaaaattacaaagctgccatccacatgggcaggtgtataaga 42838128  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 31698344 - 31698259
Alignment:
Q  130 ttttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtcta 215  Q
    ||||||||||  ||||||||||| | ||||||  |||||||||||| |||| ||||| ||||  ||| | ||||| ||||||||||    
T  31698344 ttttacccttaactttttaacaacactacaaaattgccatccacatgggcatgtgtataagagaggtgtagaaaatggtatgtcta 31698259  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 11604974 - 11604889
Alignment:
Q  139 ttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataatt 224  Q
    ||||||| ||||||||||||| ||||||| | |||||||||| ||||| || ||||||||||||||  || |||| ||||||||||    
T  11604974 ttgctttataacaaaattacagagatgccttgcacataggcaagtgtataacaatggtattgaaaaaagtgtgtcaaccaataatt 11604889  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 24768413 - 24768349
Alignment:
Q  127 caattttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaaga 191  Q
    ||||||||||  || ||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  24768413 caattttacctcttcctttttaacaaaattacaaagctgccatccacatgggcaggtgtataaga 24768349  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 36962986 - 36963038
Alignment:
Q  145 tttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggta 197  Q
    |||||| ||||||||||  || ||||||||| ||||||||||||||| |||||    
T  36962986 tttaacgaaattacaaaactgtcatccacatgggcaggtgtacaagagtggta 36963038  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 16767947 - 16767895
Alignment:
Q  145 tttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggta 197  Q
    |||||| ||||||||||  |||||||||||| ||||||||||||||| |||||    
T  16767947 tttaacgaaattacaaaactgccatccacatgggcaggtgtacaagagtggta 16767895  T

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