View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20762_low_21 (Length: 318)
Name: NF20762_low_21
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20762_low_21 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 5053067 - 5052759
Alignment:
| Q |
9 |
agcacagatcgattactttaaacgcatgattattacacacacgatgctccacttcttgagtaaggcgggaaatgaaacagttctgctatgcaaaggatgt |
108 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5053067 |
agcacagatcgattactttaaacgaatgattattacacacacgatgctccacttcttgagtaaggtgggaaatgaaacagttctgctatgcaaaggatgt |
5052968 |
T |
|
| Q |
109 |
tccagaaaaacattaatatacaaagagtattttagaaaggtcttcacacaaattagacgcattaagttcactacaaaattttcttaatatatagggagaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5052967 |
tccagaaaaacattaatatacaaagagtattttagaaaggtcttcacacaaattagacgcatcaagttcactacaaaattttcttaatatatagggagaa |
5052868 |
T |
|
| Q |
209 |
aaaatagatacttatacaatttgaaacagatggtaacatannnnnnnnnctcgaacaaggcaaactaacgaaccgaagttggatggtagcataaattaat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
5052867 |
aaaatagatacttatacaatttgaaacagatggtagcata-ttttttttctcgaacaaggcaaactaatgaaccgaaattggatggtagcataaattaat |
5052769 |
T |
|
| Q |
309 |
atgaatttac |
318 |
Q |
| |
|
|||||||||| |
|
|
| T |
5052768 |
atgaatttac |
5052759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University