View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20762_low_25 (Length: 277)
Name: NF20762_low_25
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20762_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 24 - 266
Target Start/End: Original strand, 19768506 - 19768748
Alignment:
| Q |
24 |
gcatactattttccctagattgtgtgattatggaaggttaaacctgaaatgagaatggaaattaactctgtttatcttaaggaccatgatatctattggt |
123 |
Q |
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| T |
19768506 |
gcatactattttccctagattgtttgattatggaaggttaaacttgaaatgagaatggcaattaactctgtttatcttaaggaccatgatatctattggt |
19768605 |
T |
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| Q |
124 |
atgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatatcaattaactcatgtactcatgcctctaaaactatctgcattttt |
223 |
Q |
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| T |
19768606 |
atgttcaattatattatgcagattttagtttctaacatgttaaaattaagttatatcaattaactcatgtactgatgcctctaaaactatctgcattttt |
19768705 |
T |
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| Q |
224 |
tattcttggcaggttattggaagaaaatggtgcatgttgttta |
266 |
Q |
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| T |
19768706 |
tattcttggcaggttattggaagaaaatggtgcatgttgttta |
19768748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 29200134 - 29200212
Alignment:
| Q |
113 |
tatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatatcaattaactcat |
191 |
Q |
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| T |
29200134 |
tatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaaataagttatatcaattaactcat |
29200212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 29200018 - 29200074
Alignment:
| Q |
24 |
gcatactattttccctagattgtgtgattatggaaggttaaacctgaaatgagaatg |
80 |
Q |
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| T |
29200018 |
gcatactaatttccctagattgtgtgattatgaaaggttaaacctgaaatgagaatg |
29200074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 37616781 - 37616579
Alignment:
| Q |
24 |
gcatactattttccctagattgtgtgattatggaaggttaaacctgaaatgagaatggaaattaactctgtttatcttaaggaccatgatatctattggt |
123 |
Q |
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| T |
37616781 |
gcatactattttccctagattgtgtgattatggaaggttaaacttgaaatgagaatggcaattaactctgtttatcttaaggaccatgatatctattggt |
37616682 |
T |
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| Q |
124 |
atgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatatcaattaactcatgtactcatgcctctaaaactatctgcattttt |
223 |
Q |
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| T |
37616681 |
atgttcaattatattatgcagatttaagtttctaacatgttaaaattaagttatatcaattaactcatgtactcatgcctctaaaactatctgcattttt |
37616582 |
T |
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| Q |
224 |
tat |
226 |
Q |
| |
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||| |
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|
| T |
37616581 |
tat |
37616579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 1659881 - 1659810
Alignment:
| Q |
108 |
catgatatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatat |
179 |
Q |
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| T |
1659881 |
catgatctctattggtatgttcaattatattatgtagatttcagtttctaacatgttaaaatcaagttatat |
1659810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 32226158 - 32226087
Alignment:
| Q |
108 |
catgatatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatat |
179 |
Q |
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| T |
32226158 |
catgatctctattggtatgttcaattatattatgtagatttcagtttctaacatgttaaaatcaagttatat |
32226087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 25899478 - 25899421
Alignment:
| Q |
24 |
gcatactattttccctagattgtgtgattatggaaggttaaacctgaaatgagaatgg |
81 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
25899478 |
gcatactaatttccctagattgtgtgattatgaaaggttaaacttgaaatgagaatgg |
25899421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 32663200 - 32663253
Alignment:
| Q |
28 |
actattttccctagattgtgtgattatggaaggttaaacctgaaatgagaatgg |
81 |
Q |
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|||||||||||| ||||||||||| | |||||||||| |||||| ||||||||| |
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| T |
32663200 |
actattttccctggattgtgtgataaaggaaggttaagcctgaattgagaatgg |
32663253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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