View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20762_low_26 (Length: 272)
Name: NF20762_low_26
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20762_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 49109643 - 49109903
Alignment:
| Q |
1 |
cactcttggaggatactgaaaagccataaactatg----acttataatagaaattcaaacgtcttgaatttgtggaaatatcgtgtggagccattaggcc |
96 |
Q |
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| T |
49109643 |
cactcttggaggatactgaaaagccataaactatgtatgacttataatagaaat-caaacgtcttgaatttgtggaaatatcgtgtggagccattaggcc |
49109741 |
T |
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| Q |
97 |
atgaatcctgccnnnnnnnnn----ctgaaggcaatcgaactacatacactccagttatactaatacatctatactatatcctcatcaaatcaaagcttt |
192 |
Q |
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| T |
49109742 |
atgaatcctgccaaaaaagaaaaaactgaaggcaatcgaactacatacactccagttatac------atctatactatatcctcatcaaatcaaagcttt |
49109835 |
T |
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| Q |
193 |
agagcataataatgggataatgagctgaataaaacgtgatattctctccatcctctactacacatatt |
260 |
Q |
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| T |
49109836 |
agagcataataatgggataatgagctgaataaaacgtgatattctctccatcctctactacacatatt |
49109903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 49107923 - 49108180
Alignment:
| Q |
1 |
cactcttggaggatactgaaaagccataaactatgacttataatagaaattcaaacgtcttgaatttgtggaaatatcgtgtggagccattaggccatga |
100 |
Q |
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| T |
49107923 |
cactcttggaggatactgaaaagccataaactatgacttataatacaaattcaaatgtcttatatttgtggaaatattgtgtggagtcattaagcc-tgt |
49108021 |
T |
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| Q |
101 |
atcctgccnnnnnnnnnc-------tgaaggcaatcgaactacatacactccagttatactaatacatctatactatatcctcatcaaatcaaagcttta |
193 |
Q |
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| T |
49108022 |
atcctgctaaaaataataaaaacaatgaaggcaatcgaactagggacactctagttatcc------atctatattatatcctcatcaaatcaaagcttta |
49108115 |
T |
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| Q |
194 |
gagcataataatgggataatgagc--tgaataaaacgtgatattctctccatcctctactacaca |
256 |
Q |
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| T |
49108116 |
gagtataataatgggataatgagctataaataaaatgtgatattctttccatcctctactacaca |
49108180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 49534599 - 49534636
Alignment:
| Q |
8 |
ggaggatactgaaaagccataaactatgacttataata |
45 |
Q |
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| T |
49534599 |
ggaggatactgaaaagctataaactatgacttataata |
49534636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 49534656 - 49534702
Alignment:
| Q |
41 |
taatagaaattcaaacgtcttgaatttgtggaaatatcgtgtggagc |
87 |
Q |
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| T |
49534656 |
taataaaaattcaaatgtcttgaatttttggaaatattgtgtggagc |
49534702 |
T |
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