View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20762_low_29 (Length: 271)
Name: NF20762_low_29
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20762_low_29 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 3743846 - 3744092
Alignment:
| Q |
20 |
ataagtgacagactatcagcaacagcaactggctttacaaattcagttcatctacgtccaacttcgtcaagaccgtatatgacccacaacacaattgacc |
119 |
Q |
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| T |
3743846 |
ataagtaacagactaccagcaacagcaactggctttacaaattcagtttatctacgtccaacttcgtcaagaccgtatatgacccaca-----attgacc |
3743940 |
T |
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| Q |
120 |
cggactgttcatgcattttttgaaagggcgcaacgattttacacagatattctctgtataatgtaattttgagaatccccatatcaatttaaacttttct |
219 |
Q |
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| T |
3743941 |
cggactgttcatgcattttttgaaagggcgcaacgattttacacatttattctctgtataatgtaattttgagaagccccatatcaatttaaacttttct |
3744040 |
T |
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| Q |
220 |
agtattgccaaagtaaataataaaacttgcaacagagaagatttttggaata |
271 |
Q |
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| T |
3744041 |
agtattgtcaaagtaaataataaaaattacaacagagaagatttttggaata |
3744092 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 39205245 - 39205178
Alignment:
| Q |
181 |
tgtaattttgagaatccccatatcaatttaaacttttctagtattgccaaagtaaataataaaacttgcaaca |
253 |
Q |
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| T |
39205245 |
tgtatttttgagaagccccatatcaatttaaacttttc-----ttgccaaagtaaataataaaaattgcaaca |
39205178 |
T |
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