View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20762_low_31 (Length: 258)
Name: NF20762_low_31
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20762_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 41081110 - 41081347
Alignment:
| Q |
10 |
aatatggttctactcatgcctaatgttaaaactaactttagattggtctttcattatctatggtggcttaggcaattgagaccttagttatgtcatattg |
109 |
Q |
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| T |
41081110 |
aatatggttctactcatgcctaatgttaaaactaactttagattggtctttcattatctatggtggcttaggcaattgagacctttgttatgtcatattg |
41081209 |
T |
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| Q |
110 |
tcttgctcaggattggtagaaataagtgattggagctgcaagattcatggaacctcaatgtgcaagaatgagaattttctttgacgcgtagaagatttgg |
209 |
Q |
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| T |
41081210 |
tcttgctcaggattggtagaaataagtgattggagctgcaagattcatggaacctcaatgtgcaagaatgagaattttctttgacgcgtaaaagatttgg |
41081309 |
T |
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| Q |
210 |
ttttggaactgcattggtgtttgtattttctgattcat |
247 |
Q |
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| T |
41081310 |
ttttggaactgcattggtgtttgtattttctgattcat |
41081347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 41089122 - 41089251
Alignment:
| Q |
12 |
tatggttctactcatgcctaatgttaaaactaactttagattggtctttcattatctatggtggcttaggcaattgagaccttagttatgtcatattgtc |
111 |
Q |
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| T |
41089122 |
tatggttctagtcatgcataatgttaaaactacctttagattggtctttcgttatctatggtggcttaggcaattgagactttagttatgtcatattgtc |
41089221 |
T |
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| Q |
112 |
ttgctcaggattggtagaaataagtgattg |
141 |
Q |
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| T |
41089222 |
ttgcttaggattggtagaaatatgtgattg |
41089251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 41103495 - 41103642
Alignment:
| Q |
10 |
aatatggttctactcatgcctaatgttaaaactaactttagattggtctttcattatctatggtggctt-------------aggcaattgagaccttag |
96 |
Q |
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| T |
41103495 |
aatatgattctactcatgcataatgttgaaactacctttaaattggcctttcgttatctatggtggcttgctgtgtataataaggcaattgagaccttag |
41103594 |
T |
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| Q |
97 |
ttatgtcatattgtcttgctcaggattggtagaaataagtgattggag |
144 |
Q |
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| T |
41103595 |
taaagttatactgtcttgcttaggattggtcgaaataagtgattggag |
41103642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 41089292 - 41089359
Alignment:
| Q |
151 |
gattcatggaacctcaatgtgcaagaatgagaattttct-ttgacgcgtagaagatttggttttggaa |
217 |
Q |
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| T |
41089292 |
gattcatgtgaccttaatatgcaagaatgagaattttttgttgaggcgtagaagatttggttttggaa |
41089359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 41103664 - 41103707
Alignment:
| Q |
138 |
attggagctgcaagattcatggaacctcaatgtgcaagaatgag |
181 |
Q |
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| T |
41103664 |
attggagctgcaagattcatgggacctcaatgtgcaacaatgag |
41103707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 4132286 - 4132197
Alignment:
| Q |
138 |
attggagctgcaagattcatggaacctcaatgtgcaagaatgagaattttctttgacgcgtagaagatttggttttggaactgcattggt |
227 |
Q |
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| T |
4132286 |
attggagctacatgattcatgggacctcaatatgcagcaatgagactttttgttgaggcgtagaagatttggttttggaactgtattggt |
4132197 |
T |
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