View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20762_low_39 (Length: 236)

Name: NF20762_low_39
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20762_low_39
NF20762_low_39
[»] chr4 (4 HSPs)
chr4 (1-144)||(49109378-49109521)
chr4 (1-144)||(49534319-49534463)
chr4 (143-222)||(49109251-49109330)
chr4 (142-222)||(49534189-49534272)
[»] chr1 (2 HSPs)
chr1 (142-222)||(38176110-38176190)
chr1 (61-144)||(38176237-38176320)
[»] chr5 (1 HSPs)
chr5 (163-222)||(7524494-7524553)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 49109521 - 49109378
Alignment:
Q  1 tgtgaactcgatcattaaaactgataagttgtgaaaatgatcaaagtttagatcctgggaatggtaaaaacttattaactactactagtatttaagaagt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49109521 tgtgaactcgatcattaaaactgataagttgtgacaatgatcaaagtttagatcctgggaatggtaaaaacttattaactactactagtatttaagaagt 49109422  T
Q  101 ttctggattagaaattaaaatttcaaaatgttacattaaggact 144  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  49109421 ttctggattagaaattaaaatttcaaaatgttatattaaggact 49109378  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 49534463 - 49534319
Alignment:
Q  1 tgtgaactcgatcattaaaactgataagttgtgaaaatga-tcaaagtttagatcctgggaatggtaaaaacttattaactactactagtatttaagaag 99  Q
    |||||| |||| ||||||||||||||||||| || ||||| | ||||||| ||||||| ||||||||||||||| ||| | |||||||||||||||||||    
T  49534463 tgtgaagtcgagcattaaaactgataagttgggagaatgacttaaagtttcgatcctgagaatggtaaaaacttgttagcaactactagtatttaagaag 49534364  T
Q  100 tttctggattagaaattaaaatttcaaaatgttacattaaggact 144  Q
     ||||||||||||| |||||||||||||| |||||||||||||||    
T  49534363 attctggattagaagttaaaatttcaaaaagttacattaaggact 49534319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 49109330 - 49109251
Alignment:
Q  143 ctacatgagaataaagtagctatttgttcccaacagttataagatattgctcagacacaatagctgatattggtggaagc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49109330 ctacatgagaataaagtagctatttgttcccaacagttataagatattgctcagacacaatagctgatattggtggaagc 49109251  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 49534272 - 49534189
Alignment:
Q  142 actacatgagaataaagtagctatttgttcccaa---cagttataagatattgctcagacacaatagctgatattggtggaagc 222  Q
    ||||||||||||||||||| ||||||||||| ||   |||||||||||||||||| ||||||||||||||||||||||||||||    
T  49534272 actacatgagaataaagtaactatttgttcctaataacagttataagatattgcttagacacaatagctgatattggtggaagc 49534189  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 38176190 - 38176110
Alignment:
Q  142 actacatgagaataaagtagctatttgttcccaacagttataagatattgctcagacacaatagctgatattggtggaagc 222  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  38176190 actacatgagaataaagtaactctttgttcccaacagttataggatattgctaagacacaatagctgatattggtggaagc 38176110  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 38176320 - 38176237
Alignment:
Q  61 atggtaaaaacttattaactactactagtatttaagaagtttctggattagaaattaaaatttcaaaatgttacattaaggact 144  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||| ||||  ||||||| ||||| |||||||||||||||    
T  38176320 atggtaaaaacttattaacaactactggtatttaagaagtttctggatcagaagataaaattccaaaaagttacattaaggact 38176237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 7524494 - 7524553
Alignment:
Q  163 tatttgttcccaacagttataagatattgctcagacacaatagctgatattggtggaagc 222  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  7524494 tatttgttcccaacagttataagatattgcatggacacaatagctgatattggtggaagc 7524553  T

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