View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20762_low_4 (Length: 672)
Name: NF20762_low_4
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20762_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 9 - 310
Target Start/End: Original strand, 1336132 - 1336433
Alignment:
| Q |
9 |
gagatgaacagaacgaaacagctcaaatgaaaaaacaaatgaaggtatgaaagaatagccacattcatggtttctaattgcctcaatctttttcttgcac |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1336132 |
gagatgaacagaacgaaacagctcaaatgaaaaaacaaatgaaggtatgaaagaatagccacattcatggtttctaattgcctcaatctttttcttgcac |
1336231 |
T |
|
| Q |
109 |
actaagcagcatgtacatggccacatgtgagagagggggaaagtttgctttaaaatgttaacacaaaccattgtacagttgaaagaaaaattgtacaaac |
208 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1336232 |
accaagcagcatgtacatggccacatgtgagagagggggaaagtttgctttaaaatgttaacacaaaccattgtacagttgaaagaaaaattgtacaaac |
1336331 |
T |
|
| Q |
209 |
tcaataacaaattgtcattttcaaatatgagacaaagaattcaaagtggaatataataaaattgtacaaactcaataaccatatggtgagaagttgtgcc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1336332 |
tcaataacaaattgtcattttcaaatatgagacaaagaattcaaagtggaatataataaaattgtacaaactcaataaccatatggtgagaagttgtgcc |
1336431 |
T |
|
| Q |
309 |
tg |
310 |
Q |
| |
|
|| |
|
|
| T |
1336432 |
tg |
1336433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 511 - 654
Target Start/End: Original strand, 1337166 - 1337309
Alignment:
| Q |
511 |
gcgaataaggaaataatattctattaaaatgaataactttgtatatattttggaaacaacgaaaaacttaaataattgttttcattaatttcagaaatgc |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
1337166 |
gcgaataaggaaataatattctattaaaatgaataactttctgtatattttggaaacaacgaaaaaccgaaataattgttttcattattttcagaaatgc |
1337265 |
T |
|
| Q |
611 |
atcgtccgcatctaacattttatcttctctccattgtaatggtt |
654 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1337266 |
atcgtccgcatctaacattttatcttctctccattgtaatggtt |
1337309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 1336455 - 1336499
Alignment:
| Q |
310 |
gaaaaaggatgagtgtgctgctttattgaaaaagtgtgttgaaga |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1336455 |
gaaaaaggatgagtgtgctgctttattgaaaaagtgtgttgaaga |
1336499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 12195589 - 12195529
Alignment:
| Q |
211 |
aataacaaattgtcattttcaaatatgagacaaagaattcaaagtggaatataataaaatt |
271 |
Q |
| |
|
|||||| ||||| |||||||| |||| ||||| | |||||||||||||||| ||||||||| |
|
|
| T |
12195589 |
aataaccaattgccattttcacatataagacatataattcaaagtggaatacaataaaatt |
12195529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 644
Target Start/End: Complemental strand, 14337394 - 14337342
Alignment:
| Q |
592 |
tcattaatttcagaaatgcatcgtccgcatctaacattttatcttctctccat |
644 |
Q |
| |
|
|||||| || |||||||||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
14337394 |
tcattatttccagaaatgcatcatccttagctaacattttatcttctctccat |
14337342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University