View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20762_low_40 (Length: 227)
Name: NF20762_low_40
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20762_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 38587517 - 38587711
Alignment:
| Q |
17 |
cagagatttcgcagttgcggtagaattgacgattggcttggacgtataatgtgtcctggaaaccatgcatggcgcaatcgaagaaagcagacatgtctcc |
116 |
Q |
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| T |
38587517 |
cagagatttcgcagttgcggtagaattgacgattggcttggacgtataatgtgtcctggaaaccatgcatggcgcaatcgaagaaagcagacatgtctcc |
38587616 |
T |
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| Q |
117 |
ttggtttctaaatgccactgcttggtgctttgctggtccagctgtgttctcgaatgcgattgactttgcaatgaatccatttgcaacatttgctg |
211 |
Q |
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| T |
38587617 |
ttggtttctaaatgccactgcttggtgctttgctggtccagctgtgttctcgaatgcgattgactttgcaatgaatccatttgcaacatttgctg |
38587711 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 45282386 - 45282429
Alignment:
| Q |
100 |
aaagcagacatgtctccttggtttctaaatgccactgcttggtg |
143 |
Q |
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| T |
45282386 |
aaagcagacatatctccttggtttctaaatgccacagcttggtg |
45282429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 45293726 - 45293769
Alignment:
| Q |
100 |
aaagcagacatgtctccttggtttctaaatgccactgcttggtg |
143 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
45293726 |
aaagcagacatatctccttggtttctaaatgccacagcttggtg |
45293769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 45302686 - 45302729
Alignment:
| Q |
100 |
aaagcagacatgtctccttggtttctaaatgccactgcttggtg |
143 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
45302686 |
aaagcagacatatctccttggtttctaaatgccacagcttggtg |
45302729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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