View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20762_low_6 (Length: 532)
Name: NF20762_low_6
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20762_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 21 - 500
Target Start/End: Original strand, 41080634 - 41081112
Alignment:
| Q |
21 |
gcagcgtcagaatgcagcttctgtttttgatgcagtagcagaagagaataatgagcaccgatcctccattctgaatctggaactgaaggggaccggtctt |
120 |
Q |
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| T |
41080634 |
gcagcgtcagaatgcagcttctgtttttgatgcagtagcagaagagaataatgagcaccgatcctccattctgaatctggaactgaaggggaccggtctt |
41080733 |
T |
|
| Q |
121 |
agatttgtattgtacatgcttaaannnnnnncaagaagcagcatttttatgaggcttgtaattcatagaagtttgcatttcattctttagtcgattgatt |
220 |
Q |
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| T |
41080734 |
agatttgtattgtacatgcttaaatttttt-caagaagcagcatttttatgaggcttgtaattcatagaagtttgcatttcattctttagtcaattgatt |
41080832 |
T |
|
| Q |
221 |
gtgagcaaggagatggttattcagaggatatcatggtggcaaggagatttgtggagtctcttatgccaatatacagtattatgctagttgtgtgtaatct |
320 |
Q |
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| T |
41080833 |
gtgagcaaggagatggttattcagaggatatcatggtggcaatgagatttgtggagtctcttatgccaatatacagtattatgctagttgtgtgtaatct |
41080932 |
T |
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| Q |
321 |
gcatattttgaggcatctgcggttaatattttaggtaatttattttgtataatctgcatatataagacagctgcttctattttatattatggtggagtat |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41080933 |
gcatattttgaggcatctgcggttaatattttaggtaatttattttgtataatctgcatatataagacagctgcttctattttatattatggtggagtat |
41081032 |
T |
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| Q |
421 |
gataagtaggggtgttatgtcgtttcttgacaggaaatggcattttaaccaatcaaaatcatagcatatcccttaccaat |
500 |
Q |
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| T |
41081033 |
gataagtaggggggttatgtcgtttcttgacaggaaatggcattttaaccaatcaaaatcatagcatatcccttaccaat |
41081112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 309 - 498
Target Start/End: Original strand, 41088931 - 41089120
Alignment:
| Q |
309 |
tgtgtgtaatctgcatattttgaggcatctgcggttaatattttaggtaatttattttgtataatctgcatatataagacagctgcttctattttatatt |
408 |
Q |
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||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |
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| T |
41088931 |
tgtgtgtaatctgcatattttgaggcagctactgttaatattctaggtaatttattttgtataatctacatatatgaggcagctgcttctattttatatc |
41089030 |
T |
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| Q |
409 |
atggtggagtatgataagtaggggtgttatgtcgtttcttgacaggaaatggcattttaaccaatcaaaatcatagcatatcccttacca |
498 |
Q |
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| T |
41089031 |
atggtggagtttgataagccggggtctgatgtggtttcttgacaggaaatggcattttaacgaatctaaatcatagcttatcccttacca |
41089120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 282
Target Start/End: Original strand, 41103038 - 41103310
Alignment:
| Q |
26 |
gtcagaatgcagcttctgtttttgatgcagtagcagaagagaataatgagcaccgatcctccattctgaatctggaactgaaggggaccggtcttagatt |
125 |
Q |
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||||||||||||||||||||||||| |||| ||||||| ||||||| |||||||| | ||||| | |||| ||| |||| |||| ||||||| | | |
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| T |
41103038 |
gtcagaatgcagcttctgtttttgacacagtggcagaagggaataataagcaccgagcttccatgttcaatccggagctgatggggtttggtcttaaaat |
41103137 |
T |
|
| Q |
126 |
tgtattgtacatgc----ttaaannnnnnncaagaagcagcatttttatgaggcttgtaattcatagaagtttgcatttcattctttagtcgattgattg |
221 |
Q |
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|| ||||| | ||| ||||| ||||||| |||||||| |||| |||||||||| ||| ||||||||||||||||||||||| | |||||| |
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| T |
41103138 |
tggattgtgcgtgcaggcttaaatttttt-caagaagtggcatttttgtgagacttgtaattcgtagcagtttgcatttcattctttagtcaagtgattg |
41103236 |
T |
|
| Q |
222 |
tgagcaaggagat-------------ggttattcagaggatatcatggtggcaaggagatttgtggagtctctt |
282 |
Q |
| |
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|||||| |||||| |||||||||| ||||||||||||| |||| |||||||||||||||||| |
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| T |
41103237 |
tgagcagggagatggttccaatgaagggttattcagtggatatcatggtgacaagtagatttgtggagtctctt |
41103310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 398 - 500
Target Start/End: Original strand, 41103396 - 41103497
Alignment:
| Q |
398 |
tattttatattatggtggagtatgataagtaggggtgttatgtcgtttcttgacaggaaatggcattttaaccaatcaaaatcatagcatatcccttacc |
497 |
Q |
| |
|
|||||||||| |||||||||| ||||||| |||| | |||| |||||||||||| ||||| ||||||||||||| ||||||||||| ||||| ||||| |
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| T |
41103396 |
tattttatatcatggtggagtttgataagccagggtctgatgtggtttcttgacag-aaatgccattttaaccaattaaaatcatagcttatccgttacc |
41103494 |
T |
|
| Q |
498 |
aat |
500 |
Q |
| |
|
||| |
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|
| T |
41103495 |
aat |
41103497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 1216410 - 1216457
Alignment:
| Q |
26 |
gtcagaatgcagcttctgtttttgatgcagtagcagaagagaataatg |
73 |
Q |
| |
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||||||||| ||||||| ||||||| |||||||||||||||||||||| |
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| T |
1216410 |
gtcagaatggagcttctatttttgacgcagtagcagaagagaataatg |
1216457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 1216630 - 1216677
Alignment:
| Q |
235 |
ggttattcagaggatatcatggtggcaaggagatttgtggagtctctt |
282 |
Q |
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||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
1216630 |
ggttattcaacggatataatggtggcaaggagatttgtggagtctctt |
1216677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 309
Target Start/End: Original strand, 41088836 - 41088913
Alignment:
| Q |
236 |
gttattcagaggatatcatggtggcaaggagatttgtggagtc----tcttatgccaatatacagtattatgctagtt |
309 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| ||| ||| |||| ||||||| |||||||||||||||| |
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| T |
41088836 |
gttattcagaggatatcatggtggtaaggagatttatggggtctctttcttgtgccaattcgcagtattatgctagtt |
41088913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 1216545 - 1216619
Alignment:
| Q |
164 |
tttttatgaggcttgtaattcatagaagtttgcatttcattctttagtcgattgattgtgagcaaggagatggtt |
238 |
Q |
| |
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||||| ||||| ||||||||| ||| | ||||||||| |||||||| || | |||||||||||| ||||| |||| |
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| T |
1216545 |
tttttgtgaggattgtaattcgtagcaatttgcatttaattctttactcaagtgattgtgagcagggagaaggtt |
1216619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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