View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20762_low_7 (Length: 501)

Name: NF20762_low_7
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20762_low_7
NF20762_low_7
[»] chr3 (5 HSPs)
chr3 (13-344)||(13822600-13822935)
chr3 (18-206)||(4264775-4264962)
chr3 (405-474)||(13822995-13823064)
chr3 (405-481)||(4264441-4264517)
chr3 (145-255)||(4264644-4264752)
[»] scaffold0008 (1 HSPs)
scaffold0008 (18-298)||(86386-86665)
[»] chr8 (5 HSPs)
chr8 (13-292)||(31387078-31387369)
chr8 (18-202)||(24924196-24924378)
chr8 (172-344)||(24924404-24924581)
chr8 (405-480)||(31386891-31386965)
chr8 (419-478)||(1086556-1086616)
[»] chr6 (4 HSPs)
chr6 (20-205)||(22052816-22053002)
chr6 (145-333)||(22052985-22053170)
chr6 (13-118)||(22352630-22352735)
chr6 (405-478)||(22053245-22053312)
[»] chr2 (3 HSPs)
chr2 (20-205)||(44363201-44363387)
chr2 (145-333)||(44363370-44363555)
chr2 (405-478)||(44363630-44363697)
[»] chr7 (7 HSPs)
chr7 (18-206)||(41546352-41546539)
chr7 (220-344)||(12103324-12103444)
chr7 (405-468)||(12103200-12103263)
chr7 (405-484)||(41546033-41546112)
chr7 (145-221)||(41546255-41546329)
chr7 (145-199)||(41546318-41546370)
chr7 (287-336)||(41546192-41546242)
[»] chr4 (8 HSPs)
chr4 (18-206)||(55039650-55039837)
chr4 (18-206)||(14055774-14055960)
chr4 (405-479)||(14056230-14056304)
chr4 (170-257)||(14056006-14056094)
chr4 (405-480)||(55039335-55039410)
chr4 (145-221)||(55039553-55039627)
chr4 (145-208)||(14055942-14056003)
chr4 (287-336)||(55039490-55039540)
[»] chr1 (19 HSPs)
chr1 (18-206)||(19151515-19151702)
chr1 (18-206)||(23678571-23678758)
chr1 (18-206)||(17224471-17224658)
chr1 (18-206)||(25871993-25872179)
chr1 (145-340)||(17224295-17224489)
chr1 (145-265)||(25871893-25872011)
chr1 (405-478)||(17224158-17224231)
chr1 (47-125)||(38245408-38245480)
chr1 (405-479)||(25871695-25871769)
chr1 (145-265)||(19151725-19151843)
chr1 (145-265)||(23678781-23678899)
chr1 (405-480)||(19151977-19152052)
chr1 (405-478)||(23679036-23679109)
chr1 (280-338)||(25871838-25871895)
chr1 (145-199)||(19151684-19151736)
chr1 (145-199)||(23678740-23678792)
chr1 (287-336)||(19151847-19151897)
chr1 (287-336)||(23678903-23678953)
chr1 (405-465)||(38245596-38245656)
[»] chr5 (1 HSPs)
chr5 (430-470)||(1501226-1501266)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 344
Target Start/End: Original strand, 13822600 - 13822935
Alignment:
Q  13 agcagagaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctga 112  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13822600 agcaaagaacattagattacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctga 13822699  T
Q  113 gttgaaaaaggaacactgtgaaagagatcgtcgaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacg------ 206  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |  ||||||| ||||||| ||||||||||||||||||||          
T  13822700 gttgaaaaaggaacactgtgaaagagatcgtcggagatggagcaggagacggcggctagcggctagggttgaatggaagatggagcaggagacggcgacg 13822799  T
Q  207 -acagctagggttgaacggcatgaagggtgtggcggaatgaatggtggtggcagaatgaaggggggaatggatggaactagggtgaagaaagaaaaattt 305  Q
      | ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||| |||| |    
T  13822800 cgcggctagggttgaacggaatgaagggtgtggcggaatgaatggtggtggcggaatgaaggggggaatggatggaactagggt---gaaagagaaatgt 13822896  T
Q  306 tccaccgaatgaattgaaatgagagagggtacggctaaa 344  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  13822897 tccaccgaatgaattgaaatgataaagggtacggctaaa 13822935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 4264962 - 4264775
Alignment:
Q  18 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||    
T  4264962 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatctaacagccaagaggaagaggaatatgaaagaaaataccttagttga 4264863  T
Q  118 aaaaggaacactgtgaaagagatcgtcgaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacg 206  Q
    |||||||||| ||||||| ||||||||| |||||||||||| ||||||| ||||| |||| ||||||| ||||||||| ||||||||||    
T  4264862 aaaaggaacattgtgaaacagatcgtcggagatggagcaggtgacggcggcgcgc-gctagggttgaatggaagatggggcaggagacg 4264775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 405 - 474
Target Start/End: Original strand, 13822995 - 13823064
Alignment:
Q  405 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcact 474  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||    
T  13822995 attattaattgtattgccacataagggtggtataaggtgtattgccacctatggtggtatacctatcact 13823064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 405 - 481
Target Start/End: Complemental strand, 4264517 - 4264441
Alignment:
Q  405 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctcttt 481  Q
    ||||||| ||||  ||||||| || |||||||||||||||| | ||||||||||||||| |||||||||||||||||    
T  4264517 attattatttgtggtgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctcttt 4264441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 4264752 - 4264644
Alignment:
Q  145 gaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacgacagctagggttgaacggcatgaagggt-gtggcggaa 243  Q
    ||||||||||||  ||||||||  ||||||||| ||||||| |||||||||| ||||||||| | |||||||||||| || ||||| ||| ||||| |||    
T  4264752 gaagatggagcataagacggcg--gcgcggctagggttgaatggaagatggatcaggagacggcggctagggttgaa-ggaatgaatggtggtggctgaa 4264656  T
Q  244 tgaatggtggtg 255  Q
    ||||||||||||    
T  4264655 tgaatggtggtg 4264644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 198; Significance: 1e-107; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 86665 - 86386
Alignment:
Q  18 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  86665 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctgagttga 86566  T
Q  118 aaaaggaacactgtgaaagagatcgtcgaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacgacagctagggt 217  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||| ||||  |||| ||| |||||||||||| ||||||||||||| ||||||||    
T  86565 aaaaggaacactgtgaaagagatcgtcggagatagagcaggagacggcggcgcg-tgctagggtcgaacggaagatgaagcaggagacgacggctagggt 86467  T
Q  218 tgaacggcatgaagggt-gtggcggaatgaatggtggtggcagaatgaaggggggaatggatggaactagggtgaagaaaga 298  Q
    |||||   ||||| ||| ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||    
T  86466 tgaacaaaatgaatggtggtggcggaatgaatggtggtggtggaatgaa-gggggaatggatggaactagggtgaagaaaga 86386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 31387369 - 31387078
Alignment:
Q  13 agcagagaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctga 112  Q
    |||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31387369 agcaaagaacattagatcacccaagatctcagtgaagaacttacataaatcacaaaatgtaacagccaagacgaagaggaatatggaagaaaatacctga 31387270  T
Q  113 gttgaaaaaggaacactgtgaaagagatcgtcgaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacg------ 206  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||          
T  31387269 gttgaaaaaggaacactgtgaaagagatcatcggagatggagcaggagacggcggcgcgcggctagggttgaacggaagatggagcaggagacggcggcc 31387170  T
Q  207 --------acagctagggttgaacggcatgaagggtgtggcggaatgaatggtggtggcagaatgaaggggggaatggatggaactagggtgaa 292  Q
             | |||| |||||||||| |||||||||||| ||||||||||||||||||| |||||||  |||||||||||||||| ||||||||    
T  31387169 gacggcgtgcggctaaggttgaacggaatgaagggtgtgccggaatgaatggtggtggcggaatgaa--ggggaatggatggaacaagggtgaa 31387078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 24924196 - 24924378
Alignment:
Q  18 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24924196 agaacattagatcacccaagatctcagtcaagaccttacataa-tcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttca 24924294  T
Q  118 aaaaggaacactgtgaaagagatcgtcgaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcagga 202  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||| |||||||||||||||||    
T  24924295 aaaaggaacactgtgaaagagatcgtcggagatggagcaggagacggcggcgcgc-gctagggttgagcggaagatggagcagga 24924378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 172 - 344
Target Start/End: Original strand, 24924404 - 24924581
Alignment:
Q  172 cggctaaggttgaacggaagatggagcaggagacgacag-----ctagggttgaacggcatgaagggtgtggcggaatgaatggtggtggcagaatgaag 266  Q
    |||||| |||| ||||||||||||||||||||||| | |     |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||     
T  24924404 cggctagggttcaacggaagatggagcaggagacggcggtgcggctagggttgaacggaatgaagggtgtggcggaatgaatggtggtggcagagtgaat 24924503  T
Q  267 gggggaatggatggaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagggtacggctaaa 344  Q
    || |||||| |||||||||||||||||||||| |||||||||| | ||||||||||||||||||||| ||||| ||||    
T  24924504 ggtggaatgaatggaactagggtgaagaaagagaaattttccaacaaatgaattgaaatgagagaggatacggttaaa 24924581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 480
Target Start/End: Complemental strand, 31386965 - 31386891
Alignment:
Q  405 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctctt 480  Q
    |||||||||| ||| |||||| ||  |||||||||||||| || ||||||||||||||| ||||||||||||||||    
T  31386965 attattaattttat-gccacataagagtggtataaggtgtgttgccacctatggtggtacacctatcactgctctt 31386891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 478
Target Start/End: Original strand, 1086556 - 1086616
Alignment:
Q  419 tgccacacaaaggtggtataaggtg-tattaccacctatggtggtatacctatcactgctc 478  Q
    |||||||||||||||||||| |||| |||| ||||||||||||||| || |||||||||||    
T  1086556 tgccacacaaaggtggtatatggtggtattgccacctatggtggtacacttatcactgctc 1086616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 163; Significance: 8e-87; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 22052816 - 22053002
Alignment:
Q  20 aacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttgaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22052816 aacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctaagttgaaa 22052915  T
Q  120 aaggaacactgtgaaagagatcgtcgaagatggagcaggagacggcgacgcgcg-gctaaggttgaacggaagatggagcaggagac 205  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||    
T  22052916 aaggaacactgtgaaagagatcgtcggagatggagcaggagacggcggcgcgcgcgctagggttgaacggaagatggagcaggagac 22053002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 145 - 333
Target Start/End: Original strand, 22052985 - 22053170
Alignment:
Q  145 gaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacgacagctagggttgaacggcatgaagggtgtggcggaat 244  Q
    |||||||||||||||||| |||| |||  |||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||||| |||||||     
T  22052985 gaagatggagcaggagacagcgatgcg--gctagggttgaacggaagatggagcaggagacggcaactagggttgaacggaatgaagggtggggcggaa- 22053081  T
Q  245 gaatggtggtggcagaatgaaggggggaatggatggaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagg 333  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  22053082 gaatggttgtggcggaatgaaggggggaatggatggaactagggtgaagaaagagaaattttccaccaaatgaattgaaatgagagagg 22053170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 22352735 - 22352630
Alignment:
Q  13 agcagagaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctga 112  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22352735 agcaaagaacattagatcacccaagatctcagtgaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctga 22352636  T
Q  113 gttgaa 118  Q
    ||||||    
T  22352635 gttgaa 22352630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 405 - 478
Target Start/End: Original strand, 22053245 - 22053312
Alignment:
Q  405 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctc 478  Q
    ||||||||||||||||||||| |||||||||||||||||      || ||||||||||||| ||||||||||||    
T  22053245 attattaattgtattgccacataaaggtggtataaggtg------catctatggtggtatatctatcactgctc 22053312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 8e-87; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 44363201 - 44363387
Alignment:
Q  20 aacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttgaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44363201 aacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctaagttgaaa 44363300  T
Q  120 aaggaacactgtgaaagagatcgtcgaagatggagcaggagacggcgacgcgcg-gctaaggttgaacggaagatggagcaggagac 205  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||    
T  44363301 aaggaacactgtgaaagagatcgtcggagatggagcaggagacggcggcgcgcgcgctagggttgaacggaagatggagcaggagac 44363387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 145 - 333
Target Start/End: Original strand, 44363370 - 44363555
Alignment:
Q  145 gaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacgacagctagggttgaacggcatgaagggtgtggcggaat 244  Q
    |||||||||||||||||| |||| |||  |||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||||| |||||||     
T  44363370 gaagatggagcaggagacagcgatgcg--gctagggttgaacggaagatggagcaggagacggcaactagggttgaacggaatgaagggtggggcggaa- 44363466  T
Q  245 gaatggtggtggcagaatgaaggggggaatggatggaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagg 333  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  44363467 gaatggttgtggcggaatgaaggggggaatggatggaactagggtgaagaaagagaaattttccaccaaatgaattgaaatgagagagg 44363555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 405 - 478
Target Start/End: Original strand, 44363630 - 44363697
Alignment:
Q  405 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctc 478  Q
    ||||||||||||||||||||| |||||||||||||||||      || ||||||||||||| ||||||||||||    
T  44363630 attattaattgtattgccacataaaggtggtataaggtg------catctatggtggtatatctatcactgctc 44363697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 4e-76; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 41546539 - 41546352
Alignment:
Q  18 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||    
T  41546539 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatctaacagccaagaggaagaggaatatgaaagaaaataccttagttga 41546440  T
Q  118 aaaaggaacactgtgaaagagatcgtcgaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacg 206  Q
    |||||||||||||||||| ||||||||| |||||||||||| ||||||| ||||| |||| ||||||| ||||||||||||||||||||    
T  41546439 aaaaggaacactgtgaaacagatcgtcggagatggagcaggtgacggcggcgcgc-gctagggttgaatggaagatggagcaggagacg 41546352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 220 - 344
Target Start/End: Complemental strand, 12103444 - 12103324
Alignment:
Q  220 aacggcatgaagggtgtggcggaatgaatggtggtggcagaatgaaggggggaatggatggaactagggtgaagaaagaaaaattttccaccgaatgaat 319  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||   |||||| ||| ||| ||| ||||||||    
T  12103444 aacggaatgaagggtgtggcggaatgaatggtggtggcggaatgaag-ggggaatgaatggaactagggt---gaaagagaaaattttcactgaatgaat 12103349  T
Q  320 tgaaatgagagagggtacggctaaa 344  Q
    |||||||||||||||||||||||||    
T  12103348 tgaaatgagagagggtacggctaaa 12103324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 405 - 468
Target Start/End: Complemental strand, 12103263 - 12103200
Alignment:
Q  405 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacct 468  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  12103263 attattaattgtattgccacacaagggtggtataaggtgtattgccacctatggtggtatacct 12103200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 405 - 484
Target Start/End: Complemental strand, 41546112 - 41546033
Alignment:
Q  405 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctctttata 484  Q
    ||||||| ||||  ||||||| || |||||||||||||||| | ||||||||||||||| |||||||||||||| |||||    
T  41546112 attattatttgtggtgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctcattata 41546033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 41546329 - 41546255
Alignment:
Q  145 gaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacgacagctagggttgaa 221  Q
    ||||||||||||  ||||||||  ||||||||| ||||||| |||||||||| ||||||||| | ||||||||||||    
T  41546329 gaagatggagcataagacggcg--gcgcggctagggttgaatggaagatggatcaggagacggcggctagggttgaa 41546255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 41546370 - 41546318
Alignment:
Q  145 gaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagca 199  Q
    ||||||||||||||||||||||  ||||||||| |||  ||||||||||||||||    
T  41546370 gaagatggagcaggagacggcg--gcgcggctagggtgtaacggaagatggagca 41546318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 41546242 - 41546192
Alignment:
Q  287 ggtgaagaaagaaaaattttccaccgaa-tgaattgaaatgagagagggta 336  Q
    |||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  41546242 ggtgaagaaagagaaattttccaacaaaatgaattgaaatgagagagggta 41546192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 4e-76; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 55039837 - 55039650
Alignment:
Q  18 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||    
T  55039837 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatctaacagccaagaggaagaggaatatgaaagaaaataccttagttga 55039738  T
Q  118 aaaaggaacactgtgaaagagatcgtcgaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacg 206  Q
    |||||||||||||||||| ||||||||| |||||||||||| ||||||| ||||| |||| ||||||| ||||||||||||||||||||    
T  55039737 aaaaggaacactgtgaaacagatcgtcggagatggagcaggtgacggcggcgcgc-gctagggttgaatggaagatggagcaggagacg 55039650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 14055774 - 14055960
Alignment:
Q  18 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||| ||||    
T  14055774 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatctaacagccaagaggaagaggaatattaaagaaaatacctgacttga 14055873  T
Q  118 aaaaggaacactgtgaaagagatcgtcgaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacg 206  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||   |||||| |||||||||| || ||||||    
T  14055874 aaaa-gaacactgtgaaagagatcgtcggagatggagcaggtgacggcggcgcgc-gcttgcgttgaatggaagatggaacaagagacg 14055960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 405 - 479
Target Start/End: Original strand, 14056230 - 14056304
Alignment:
Q  405 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctct 479  Q
    ||||||| |||| ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  14056230 attattatttgtgttgccacacaagggtggtataaggtgtattgccacctatggtggtacacctatcactgctct 14056304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 14056006 - 14056094
Alignment:
Q  170 cgcggctaaggttgaacggaagatggagcaggagacgacagctagggttgaacggcatgaagggt-gtggcggaatgaatggtggtggc 257  Q
    |||||||| ||||| |||||||||||||||||||||| | ||||||||||||||| ||||| ||| |||||||||||||  ||||||||    
T  14056006 cgcggctagggttggacggaagatggagcaggagacggcggctagggttgaacggaatgaatggtggtggcggaatgaacagtggtggc 14056094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 405 - 480
Target Start/End: Complemental strand, 55039410 - 55039335
Alignment:
Q  405 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctctt 480  Q
    ||||||| ||||  ||||||| || |||||||||||||||| | ||||||||||||||| ||||||||||||||||    
T  55039410 attattatttgtggtgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctctt 55039335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 55039627 - 55039553
Alignment:
Q  145 gaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacgacagctagggttgaa 221  Q
    ||||||||||||  ||||||||  ||||||||| ||||||| |||||||||| ||||||||| | ||||||||||||    
T  55039627 gaagatggagcataagacggcg--gcgcggctagggttgaatggaagatggatcaggagacggcggctagggttgaa 55039553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 14055942 - 14056003
Alignment:
Q  145 gaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacgac 208  Q
    ||||||||| || |||||||||  ||||||||| |||||||||||||||||||||  |||||||    
T  14055942 gaagatggaacaagagacggcg--gcgcggctacggttgaacggaagatggagcaaaagacgac 14056003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 55039540 - 55039490
Alignment:
Q  287 ggtgaagaaagaaaaattttccaccgaa-tgaattgaaatgagagagggta 336  Q
    |||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  55039540 ggtgaagaaagagaaattttccaacaaaatgaattgaaatgagagagggta 55039490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 4e-76; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 19151515 - 19151702
Alignment:
Q  18 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||    
T  19151515 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatctaacagccaagaggaagaggaatatgaaagaaaataccttagttga 19151614  T
Q  118 aaaaggaacactgtgaaagagatcgtcgaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacg 206  Q
    |||||||||||||||||| ||||||||| |||||||||||| ||||||| ||||| |||| ||||||| ||||||||||||||||||||    
T  19151615 aaaaggaacactgtgaaacagatcgtcggagatggagcaggtgacggcggcgcgc-gctagggttgaatggaagatggagcaggagacg 19151702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 23678571 - 23678758
Alignment:
Q  18 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||    
T  23678571 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatctaacagccaagaggaagaggaatatgaaagaaaataccttagttga 23678670  T
Q  118 aaaaggaacactgtgaaagagatcgtcgaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacg 206  Q
    |||||||||||||||||| ||||||||| |||||||||||| ||||||| ||||| |||| ||||||| ||||||||||||||||||||    
T  23678671 aaaaggaacactgtgaaacagatcgtcggagatggagcaggtgacggcggcgcgc-gctagggttgaatggaagatggagcaggagacg 23678758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 17224658 - 17224471
Alignment:
Q  18 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  17224658 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatctaacagccaagaggaagaggaatatgaaagaaaatacctgagttga 17224559  T
Q  118 aaaaggaacactgtgaaagagatcgtcgaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacg 206  Q
    |||||||||||||| ||||||||||||| |||||||||||| ||||||| ||| | |||| ||||||| |||||||||||||| |||||    
T  17224558 aaaaggaacactgtaaaagagatcgtcggagatggagcaggtgacggcggcgctc-gctagggttgaatggaagatggagcagaagacg 17224471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 25872179 - 25871993
Alignment:
Q  18 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||    
T  25872179 agaacattagatcacccaagatctcagtcaagaccttacataaatcacaaaatctaacagccaagaggaagaggaatatgaaagaaaata-ctgagttga 25872081  T
Q  118 aaaaggaacactgtgaaagagatcgtcgaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacg 206  Q
    | ||||||||||||||||||||| |||| |||||||||||| ||||||| ||||| |||| ||||||| ||||||| ||||||||||||    
T  25872080 agaaggaacactgtgaaagagattgtcggagatggagcaggtgacggcggcgcgc-gctagggttgaatggaagattgagcaggagacg 25871993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 145 - 340
Target Start/End: Complemental strand, 17224489 - 17224295
Alignment:
Q  145 gaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacgacagctagggttgaacggcatgaagggtgtggcggaat 244  Q
    ||||||||||||| ||||| || ||||  |||| |||||||||||||||||||| ||||||| | ||||||||||||||| |||||||||| ||||||||    
T  17224489 gaagatggagcagaagacgccgccgcg--gctagggttgaacggaagatggagcgggagacggcggctagggttgaacggaatgaagggtggggcggaat 17224392  T
Q  245 gaatggtggtggcagaatgaaggggggaat-ggatggaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagggtacggc 340  Q
    ||||||||||||  ||||||| || ||  | |||  ||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||    
T  17224391 gaatggtggtggaggaatgaatggtggtgtcggaatgaactagggtgaagaaagagaaattttctatcaaatgaattgaaatgagagagggtacggc 17224295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 25872011 - 25871893
Alignment:
Q  145 gaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacgacagctagggttgaacggcatgaagggtgtggcggaat 244  Q
    |||||| |||||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||  |||||||||||| | |||||||||| | ||||||    
T  25872011 gaagattgagcaggagacggcg--gcgaggctagggttgaacggaagatggagcaggagacgacgactagggttgaacagaatgaagggtgggacggaat 25871914  T
Q  245 gaatggtggtggcagaatgaa 265  Q
    ||||||||||||| |||||||    
T  25871913 gaatggtggtggcggaatgaa 25871893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 405 - 478
Target Start/End: Complemental strand, 17224231 - 17224158
Alignment:
Q  405 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctc 478  Q
    ||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  17224231 attattatttgtgttgccacacaaaggtggtataaggtgtattgccacctatggtggtacacctatcactgctc 17224158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 125
Target Start/End: Original strand, 38245408 - 38245480
Alignment:
Q  47 aagaccttacataaatcacaaaatgtaacagccaagaggaagaggaatatggaagaaaatacctgagttgaaaaaggaa 125  Q
    |||||||||||||||||||||||||||||| ||||||      ||||||||||||||||||||||||||||||||||||    
T  38245408 aagaccttacataaatcacaaaatgtaacaaccaaga------ggaatatggaagaaaatacctgagttgaaaaaggaa 38245480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 405 - 479
Target Start/End: Complemental strand, 25871769 - 25871695
Alignment:
Q  405 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctct 479  Q
    ||||||| |||| |||||||| || |||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  25871769 attattatttgtgttgccacaaaagggtggtataaggtgtattgccacctatggtggtacacctatcactgctct 25871695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 19151725 - 19151843
Alignment:
Q  145 gaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacgacagctagggttgaacggcatgaagggt-gtggcggaa 243  Q
    ||||||||||||  ||||||||  ||||||||| ||||||| |||||||||| ||||||||| | |||||||||||| || ||||| ||| ||||| |||    
T  19151725 gaagatggagcataagacggcg--gcgcggctagggttgaatggaagatggatcaggagacggcggctagggttgaa-ggaatgaatggtggtggctgaa 19151821  T
Q  244 tgaatggtggtggcagaatgaa 265  Q
    |||||||||| ||| |||||||    
T  19151822 tgaatggtggcggcggaatgaa 19151843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 265
Target Start/End: Original strand, 23678781 - 23678899
Alignment:
Q  145 gaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagcaggagacgacagctagggttgaacggcatgaagggt-gtggcggaa 243  Q
    ||||||||||||  ||||||||  ||||||||| ||||||| |||||||||| ||||||||| | |||||||||||| || ||||| ||| ||||| |||    
T  23678781 gaagatggagcataagacggcg--gcgcggctagggttgaatggaagatggatcaggagacggcggctagggttgaa-ggaatgaatggtggtggctgaa 23678877  T
Q  244 tgaatggtggtggcagaatgaa 265  Q
    |||||||||| ||| |||||||    
T  23678878 tgaatggtggcggcggaatgaa 23678899  T

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Target: chr1; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 405 - 480
Target Start/End: Original strand, 19151977 - 19152052
Alignment:
Q  405 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctctt 480  Q
    ||||||| ||||  ||||||| || |||||||||||||||| | ||||||||||||||| ||||||||||||||||    
T  19151977 attattatttgtggtgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctctt 19152052  T

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Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 478
Target Start/End: Original strand, 23679036 - 23679109
Alignment:
Q  405 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtatacctatcactgctc 478  Q
    ||||||| ||||  ||||||| || |||||||||||||||| | ||||||||||||||| ||||||||||||||    
T  23679036 attattatttgtggtgccacataagggtggtataaggtgtagtgccacctatggtggtacacctatcactgctc 23679109  T

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Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 338
Target Start/End: Complemental strand, 25871895 - 25871838
Alignment:
Q  280 gaactagggtgaagaaagaaaaattttccaccgaatgaattgaaatgagagagggtacg 338  Q
    ||||||||||||||||||| ||| |||||||| ||||||||| ||||||||||||||||    
T  25871895 gaactagggtgaagaaagagaaaatttccaccaaatgaattg-aatgagagagggtacg 25871838  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 19151684 - 19151736
Alignment:
Q  145 gaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagca 199  Q
    ||||||||||||||||||||||  ||||||||| |||  ||||||||||||||||    
T  19151684 gaagatggagcaggagacggcg--gcgcggctagggtgtaacggaagatggagca 19151736  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 23678740 - 23678792
Alignment:
Q  145 gaagatggagcaggagacggcgacgcgcggctaaggttgaacggaagatggagca 199  Q
    ||||||||||||||||||||||  ||||||||| |||  ||||||||||||||||    
T  23678740 gaagatggagcaggagacggcg--gcgcggctagggtgtaacggaagatggagca 23678792  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 336
Target Start/End: Original strand, 19151847 - 19151897
Alignment:
Q  287 ggtgaagaaagaaaaattttccaccgaa-tgaattgaaatgagagagggta 336  Q
    |||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  19151847 ggtgaagaaagagaaattttccaacaaaatgaattgaaatgagagagggta 19151897  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 336
Target Start/End: Original strand, 23678903 - 23678953
Alignment:
Q  287 ggtgaagaaagaaaaattttccaccgaa-tgaattgaaatgagagagggta 336  Q
    |||||||||||| |||||||||| | || ||||||||||||||||||||||    
T  23678903 ggtgaagaaagagaaattttccaacaaaatgaattgaaatgagagagggta 23678953  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 465
Target Start/End: Original strand, 38245596 - 38245656
Alignment:
Q  405 attattaattgtattgccacacaaaggtggtataaggtgtattaccacctatggtggtata 465  Q
    |||||||||  ||||||||||||| ||||||| |||||||||| |||  || |||||||||    
T  38245596 attattaatgatattgccacacaagggtggtacaaggtgtattgccatgtacggtggtata 38245656  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 1501226 - 1501266
Alignment:
Q  430 ggtggtataaggtgtattaccacctatggtggtatacctat 470  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  1501226 ggtggtagaaggtgtattgccacctatggtggtatacctat 1501266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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