View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20762_low_9 (Length: 447)
Name: NF20762_low_9
Description: NF20762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20762_low_9 |
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| [»] scaffold0415 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 5 - 428
Target Start/End: Complemental strand, 2831261 - 2830838
Alignment:
| Q |
5 |
ggagcagagaaatatgaatatgtctaaacattccaatggacaggaacacaataaaaattcccaagagttagagatgaaactctcacaatgtgaaacaagt |
104 |
Q |
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| T |
2831261 |
ggagcagaaaaatatgaatatgtctaaacattccaatggacaggaacacaataaaaattcccaagagttagagatgaaactctcacaatgtgaaacaagt |
2831162 |
T |
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| Q |
105 |
gatgatgaagatcaaaaagcattggatgatcttgtcaaggagaaaagtgatgccaaggagacacacttgcttgagnnnnnnnttatagacttgtatggtg |
204 |
Q |
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| T |
2831161 |
gatgatgaagatcaaaaagcattggatgatcttgtcaaggagaaaagtgatgccaaggagacacacttgcttgagaaaaaaattatagacttgtatggtg |
2831062 |
T |
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| Q |
205 |
aaattgaaatgtataggagggacaaagaggagttagagatgcaaatagagcagattgcactagactatgagatattaaaacaggaaaaccacaagcttgt |
304 |
Q |
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| T |
2831061 |
aaattgaaatgtataggagggacaaagaggagttagagatgcaaatagagcagattgcactagactatgagatattaaaacaggaaaaccacaagcttgt |
2830962 |
T |
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| Q |
305 |
acataagctagagcaaagccatctgcaggaacagttaaacatccaatatgagtgttcatctcctcctggtgctatgaatggcattgaaactcacattgag |
404 |
Q |
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| T |
2830961 |
acataagctagagcaaagccaactgcaggaacagttaaacatccaatatgagtgttcatctcctcctggtgctatgaatggcattgaaactcacattgag |
2830862 |
T |
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| Q |
405 |
aatctggaaaaagaactcaaggaa |
428 |
Q |
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| T |
2830861 |
aatctggaaaaagaactcaaggaa |
2830838 |
T |
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Target: scaffold0415 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 198 - 295
Target Start/End: Original strand, 4071 - 4168
Alignment:
| Q |
198 |
tatggtgaaattgaaatgtataggagggacaaagaggagttagagatgcaaatagagcagattgcactagactatgagatattaaaacaggaaaacca |
295 |
Q |
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| T |
4071 |
tatggtgaaatagagatgtataggagagacaaagatgagttagagatgcagatggagcagcttgcactggactatgaaattttgaaacaggaaaacca |
4168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 198 - 295
Target Start/End: Original strand, 40799441 - 40799538
Alignment:
| Q |
198 |
tatggtgaaattgaaatgtataggagggacaaagaggagttagagatgcaaatagagcagattgcactagactatgagatattaaaacaggaaaacca |
295 |
Q |
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| T |
40799441 |
tatggtgaaatagagatgtataggagagacaaagatgagttagagatgcagatggagcagcttgcactggactatgaaattttgaaacaggaaaacca |
40799538 |
T |
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