View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20763_high_13 (Length: 260)
Name: NF20763_high_13
Description: NF20763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20763_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 45878398 - 45878632
Alignment:
| Q |
17 |
aagaacatctagggatgcctta----cacaactatagctgtcaagggggtnnnnnnnntactgataatagccgagtgcccggccacactctaaagtttcc |
112 |
Q |
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| T |
45878398 |
aagaacatctagggataccttatacacacaactatagctgtcaagggggtaaaaaaaatactgataatagccgagtgcccggccacactctaaagtctcc |
45878497 |
T |
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| Q |
113 |
taaattaagcaaatactatataggatctaacacttggatgatctcatctatttcaattacatcagcatgtgtatgttggttaatggttcataacaaatat |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45878498 |
taaattaagcaaataccatataggatctaacacttggatgatctcatctatttcaattacatcagcatgtgtatgttggttaatggttcataacaaatat |
45878597 |
T |
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| Q |
213 |
tttattagcatcccactcataggacacctcctttc |
247 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
45878598 |
tttattagcatcccactcataggacacctcctttc |
45878632 |
T |
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