View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20763_high_14 (Length: 257)
Name: NF20763_high_14
Description: NF20763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20763_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 51211946 - 51211723
Alignment:
| Q |
19 |
cgaattgaaccaattatctgctctactatagttgctgcttcagagtatgccgtttgtccacaggatgccatcattgcgaaagcaaagctcattatggaac |
118 |
Q |
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| T |
51211946 |
cgaattgaaccgattatctgctctactatagttgctgcttcagaatatgccgtttgtccacgggatgccatcattgcgaaagcaaagctcattatggaac |
51211847 |
T |
|
| Q |
119 |
cagagaggacaagaagaggaatagacgatagaaggacaagggttagaagccaacccaagatgaatgccacaactaaacctcctaaaaaacatgacacata |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51211846 |
cagagaggacaagaagaggaatagacgatagaaggacaagggttaaaagccaacccaagatgaatgccacaactaaacctcctaaaaaacatgacacata |
51211747 |
T |
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| Q |
219 |
ttgtatgaattttcctacctgcag |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
51211746 |
ttgtatgaattttcctacctgcag |
51211723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 49738226 - 49738446
Alignment:
| Q |
19 |
cgaattgaaccaattatctgctctactatagttgctgcttcagagtatgccgtttgtccacaggatgccatcattgcgaaagcaaagctcattatggaac |
118 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||| ||||| | |||||| | |||||||||| ||||||||||||||||||||||||||| |
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| T |
49738226 |
cgaattgaaccaattatccggtctactatagttgctgcttcagaatatgctgcttgtcctcgggatgccatctttgcgaaagcaaagctcattatggaac |
49738325 |
T |
|
| Q |
119 |
cagagaggacaagaagaggaatagacgatagaaggacaagggttagaagccaacccaagatgaatgccacaactaaacctcctaaaaaacatgacacata |
218 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
49738326 |
cagagaggacaagaagaggaagagaagatagaaggacaaggcttagaagccaacccttgatgaatgcaacaactaaacctcctaaaaaagatgacacata |
49738425 |
T |
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| Q |
219 |
ttgtatgaattttcctacctg |
239 |
Q |
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|||||||||||||||||||| |
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| T |
49738426 |
ctgtatgaattttcctacctg |
49738446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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