View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20763_high_22 (Length: 219)

Name: NF20763_high_22
Description: NF20763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20763_high_22
NF20763_high_22
[»] chr6 (32 HSPs)
chr6 (1-219)||(26806968-26807187)
chr6 (2-118)||(27588922-27589044)
chr6 (2-115)||(26963733-26963846)
chr6 (17-113)||(26639744-26639840)
chr6 (31-115)||(26650494-26650578)
chr6 (17-113)||(26745710-26745806)
chr6 (31-115)||(26756462-26756546)
chr6 (31-115)||(26627730-26627814)
chr6 (31-115)||(26733707-26733791)
chr6 (136-218)||(27589158-27589240)
chr6 (2-115)||(27419405-27419518)
chr6 (18-115)||(31288537-31288634)
chr6 (55-115)||(27660701-27660761)
chr6 (30-109)||(26629008-26629087)
chr6 (30-109)||(26734984-26735063)
chr6 (53-115)||(27423116-27423178)
chr6 (25-115)||(25078331-25078413)
chr6 (31-107)||(27702644-27702720)
chr6 (148-218)||(27419703-27419773)
chr6 (148-218)||(27507184-27507254)
chr6 (55-114)||(26060472-26060531)
chr6 (55-114)||(26080442-26080501)
chr6 (53-115)||(26964653-26964715)
chr6 (57-115)||(27714256-27714314)
chr6 (148-218)||(26627545-26627615)
chr6 (148-218)||(26733522-26733592)
chr6 (148-218)||(26852719-26852789)
chr6 (148-218)||(27368163-27368233)
chr6 (148-218)||(27458510-27458580)
chr6 (148-218)||(27714434-27714504)
chr6 (179-216)||(26889635-26889672)
chr6 (161-218)||(31288419-31288476)
[»] chr4 (9 HSPs)
chr4 (36-115)||(18675035-18675114)
chr4 (23-115)||(18693077-18693169)
chr4 (36-115)||(18685608-18685687)
chr4 (36-115)||(18683352-18683431)
chr4 (36-115)||(18719565-18719644)
chr4 (36-115)||(18726862-18726941)
chr4 (2-109)||(5082466-5082573)
chr4 (36-115)||(18650916-18650995)
chr4 (148-218)||(5082199-5082269)
[»] scaffold0003 (3 HSPs)
scaffold0003 (2-115)||(67845-67958)
scaffold0003 (53-115)||(64185-64247)
scaffold0003 (148-218)||(67590-67660)
[»] scaffold0349 (2 HSPs)
scaffold0349 (57-115)||(17630-17688)
scaffold0349 (148-218)||(17440-17510)
[»] chr8 (1 HSPs)
chr8 (57-115)||(29270149-29270207)
[»] chr1 (1 HSPs)
chr1 (185-218)||(26140951-26140984)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 26807187 - 26806968
Alignment:
Q  1 taatatattactttgag-ataataaccaacttctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatctt 99  Q
    ||||||||||||||| | ||||||||||| |||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  26807187 taatatattactttggggataataaccaatttctttttcaaaagatctttcacaaagattatgactaaaagcatttatgctttcaaagtataaggatctt 26807088  T
Q  100 acttgtaacaacattctttctggaccatagggattcagcatccttatgtgatagctacggattctcctttctgcaggtgaaaagaattcaaataggtgtg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||  ||||    
T  26807087 acttgtaacaacattctttctggaccatagggattcagcatccttatgtgatagcaacggattctcctttctgcaggtcaaaagaattcaaatacatgtg 26806988  T
Q  200 ataagtaacacaatatacat 219  Q
    ||||||||||||||||||||    
T  26806987 ataagtaacacaatatacat 26806968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 27588922 - 27589044
Alignment:
Q  2 aatatattactttgagataataaccaacttctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataagg------a 95  Q
    |||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||      |    
T  27588922 aatatattactttgggataataaccaatttctttttcaaaagatctttcacaaagattatgattaaaagcatttatgctttcaaagtattaggatcttaa 27589021  T
Q  96 tcttacttgtaacaacattcttt 118  Q
    |||||||||||||||||||||||    
T  27589022 tcttacttgtaacaacattcttt 27589044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 26963846 - 26963733
Alignment:
Q  2 aatatattactttgagataataaccaacttctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttac 101  Q
    ||||||||||| || ||||  || ||| |||||||||||||||| ||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||    
T  26963846 aatatattactatgggatatcaatcaatttctttttcaaaagatctttcataaagattatgattaagagcatttgtggtttcaaagtataaggatcttac 26963747  T
Q  102 ttgtaacaacattc 115  Q
    ||||||||||||||    
T  26963746 ttgtaacaacattc 26963733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 26639840 - 26639744
Alignment:
Q  17 gataataaccaacttctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacat 113  Q
    |||||||| ||| |||||||| ||||||  | ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  26639840 gataataatcaatttcttttttaaaagacctctcacaaagattatgattaaaagcatttatgttttcaaagtataaggatcttacttgtaacaacat 26639744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 26650578 - 26650494
Alignment:
Q  31 tctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    |||| |||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26650578 tcttcttcaaaagatctttcataaagattatgattaaaagcatttatggtttcaaagtataaggatcttacttgtaacaacattc 26650494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 26745806 - 26745710
Alignment:
Q  17 gataataaccaacttctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacat 113  Q
    |||||||| ||| |||||||| ||||||  | ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  26745806 gataataatcaatttcttttttaaaagacctctcacaaagattatgattaaaagcatttatgttttcaaagtataaggatcttacttgtaacaacat 26745710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 26756546 - 26756462
Alignment:
Q  31 tctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    |||| |||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26756546 tcttcttcaaaagatctttcataaagattatgattaaaagcatttatggtttcaaagtataaggatcttacttgtaacaacattc 26756462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 26627814 - 26627730
Alignment:
Q  31 tctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    ||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  26627814 tctttttcaaatgatctttcataaagattatgattaaaagcatttatgctttcgaagtataaggatcttacttgtaacaccattc 26627730  T

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Target: chr6; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 26733791 - 26733707
Alignment:
Q  31 tctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    ||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  26733791 tctttttcaaatgatctttcataaagattatgattaaaagcatttatgctttcgaagtataaggatcttacttgtaacaccattc 26733707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 27589158 - 27589240
Alignment:
Q  136 agcatccttatgtgatagctacggattctcctttctgcaggtgaaaagaattcaaataggtgtgataagtaacacaatataca 218  Q
    ||||||||||||||| ||||||| |||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||||    
T  27589158 agcatccttatgtgacagctacgtattctcctttctgcaggtcacaagcattcaaatagatgtgataagtaacacaatataca 27589240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 27419405 - 27419518
Alignment:
Q  2 aatatattactttgagataataaccaacttctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttac 101  Q
    ||||||||| |||  |||||| | |||||||||||| ||||||| ||||  ||| |||||||||  ||| | ||||||||||||||||||||||||||||    
T  27419405 aatatattattttcggataatgatcaacttctttttaaaaagatgtttcgaaaatattatgattataagaacttatgctttcaaagtataaggatcttac 27419504  T
Q  102 ttgtaacaacattc 115  Q
    |||||||| |||||    
T  27419505 ttgtaacagcattc 27419518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 31288634 - 31288537
Alignment:
Q  18 ataataaccaacttctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    ||||||| |||||||||| | |||| || ||||| |||| |||||||| ||||||||||||||||||||||||||| ||||||||  |||||||||||    
T  31288634 ataataatcaacttctttctgaaaatatctttcataaagtttatgattaaaagcatttatgctttcaaagtataagtatcttactcataacaacattc 31288537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 27660701 - 27660761
Alignment:
Q  55 agattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27660701 agattatgattaaaagcatttattctttcaaagtataaggatcttacttgtaacaacattc 27660761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 26629087 - 26629008
Alignment:
Q  30 ttctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaaca 109  Q
    |||||||||| ||||| ||||| ||||||||||||| ||||| |||||| |||||||| ||||| |||||||||||||||    
T  26629087 ttctttttcagaagatctttcataaagattatgattaaaagcgtttatggtttcaaaggataagaatcttacttgtaaca 26629008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 26735063 - 26734984
Alignment:
Q  30 ttctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaaca 109  Q
    |||||||||| ||||| ||||| ||||||||||||| ||||| |||||| |||||||| ||||| |||||||||||||||    
T  26735063 ttctttttcagaagatctttcataaagattatgattaaaagcgtttatggtttcaaaggataagaatcttacttgtaaca 26734984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 27423116 - 27423178
Alignment:
Q  53 aaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    ||||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  27423116 aaagattataattaaaagtatttatggtttcaaagtataaggatcttacttgtaacaacattc 27423178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 25078413 - 25078331
Alignment:
Q  25 ccaacttctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    |||| |||||||||||||||| |||||||||||||| |||| |||||||||||||        ||||||||||||||||||||||||||||    
T  25078413 ccaatttctttttcaaaagatctttcacaaagattaagattaaaagcatttatgc--------tataaggatcttacttgtaacaacattc 25078331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 27702644 - 27702720
Alignment:
Q  31 tctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaa 107  Q
    |||||||||||  || ||||| ||||||||||||| ||| ||||||||||||| |||||||| ||||||||||||||    
T  27702644 tctttttcaaataatctttcataaagattatgattaaaaccatttatgctttcgaagtataaagatcttacttgtaa 27702720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 27419703 - 27419773
Alignment:
Q  148 tgatagctacggattctcctttctgcaggtgaaaagaattcaaataggtgtgataagtaacacaatataca 218  Q
    ||||||||| || |||||| ||||||| || | ||| |||||||||| |||||||||||||||||||||||    
T  27419703 tgatagctatggcttctccattctgcaagtcacaagcattcaaatagatgtgataagtaacacaatataca 27419773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 27507184 - 27507254
Alignment:
Q  148 tgatagctacggattctcctttctgcaggtgaaaagaattcaaataggtgtgataagtaacacaatataca 218  Q
    ||||||||| |||||||  ||||||||||| | | | |||||||||| |||||||||||||||||||||||    
T  27507184 tgatagctatggattcttatttctgcaggtcacatgcattcaaatagatgtgataagtaacacaatataca 27507254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 26060531 - 26060472
Alignment:
Q  55 agattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacatt 114  Q
    ||||||||||| ||||||||||| |||| ||| |||||| ||| ||||||||||||||||    
T  26060531 agattatgattaaaagcatttattctttaaaaatataagaatcatacttgtaacaacatt 26060472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 26080501 - 26080442
Alignment:
Q  55 agattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacatt 114  Q
    ||||||||||| ||||||||||| |||| ||| |||||| ||| ||||||||||||||||    
T  26080501 agattatgattaaaagcatttattctttaaaaatataagaatcatacttgtaacaacatt 26080442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 26964715 - 26964653
Alignment:
Q  53 aaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    ||||||||||||| | || |||| || ||| ||||||||||||||||||||||| ||||||||    
T  26964715 aaagattatgattaagagtatttttggttttaaagtataaggatcttacttgtaccaacattc 26964653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 27714256 - 27714314
Alignment:
Q  57 attatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    ||||||||| ||| |||||| |||||| |||||||||||||||| |||||||| |||||    
T  27714256 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattc 27714314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 26627615 - 26627545
Alignment:
Q  148 tgatagctacggattctcctttctgcaggtgaaaagaattcaaataggtgtgataagtaacacaatataca 218  Q
    |||||| || || ||||||||||||||||  | ||| |||||| ||| |||||||||||||| ||||||||    
T  26627615 tgatagatatggcttctcctttctgcagggcacaagcattcaagtagatgtgataagtaacataatataca 26627545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 26733592 - 26733522
Alignment:
Q  148 tgatagctacggattctcctttctgcaggtgaaaagaattcaaataggtgtgataagtaacacaatataca 218  Q
    |||||| || || ||||||||||||||||  | ||| |||||| ||| |||||||||||||| ||||||||    
T  26733592 tgatagatatggcttctcctttctgcagggcacaagcattcaagtagatgtgataagtaacataatataca 26733522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 26852789 - 26852719
Alignment:
Q  148 tgatagctacggattctcctttctgcaggtgaaaagaattcaaataggtgtgataagtaacacaatataca 218  Q
    |||| |||| || ||||||||||||||||  | ||| |||||||||| |||| ||||||||| ||||||||    
T  26852789 tgatggctatggcttctcctttctgcaggacacaagcattcaaatagatgtggtaagtaacataatataca 26852719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 27368163 - 27368233
Alignment:
Q  148 tgatagctacggattctcctttctgcaggtgaaaagaattcaaataggtgtgataagtaacacaatataca 218  Q
    ||||||||| || | |||||||||||| |  | ||| |||||||||| | |||||||||||||||||||||    
T  27368163 tgatagctatggctactcctttctgcaagacacaagcattcaaatagatatgataagtaacacaatataca 27368233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 27458510 - 27458580
Alignment:
Q  148 tgatagctacggattctcctttctgcaggtgaaaagaattcaaataggtgtgataagtaacacaatataca 218  Q
    ||||||||| || | |||||||||||| |  | ||| |||||||||| | |||||||||||||||||||||    
T  27458510 tgatagctatggctactcctttctgcaagacacaagcattcaaatagatatgataagtaacacaatataca 27458580  T

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Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 27714434 - 27714504
Alignment:
Q  148 tgatagctacggattctcctttctgcaggtgaaaagaattcaaataggtgtgataagtaacacaatataca 218  Q
    |||||| || || ||||||||||||||||  | ||| |||||| ||| |||||||||||||| ||||||||    
T  27714434 tgatagatatggcttctcctttctgcagggcacaagcattcaagtagatgtgataagtaacataatataca 27714504  T

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Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 26889672 - 26889635
Alignment:
Q  179 aaaagaattcaaataggtgtgataagtaacacaatata 216  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  26889672 aaaagaattcaaatagatgtgataagtagcacaatata 26889635  T

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Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 31288476 - 31288419
Alignment:
Q  161 ttctcctttctgcaggtgaaaagaattcaaataggtgtgataagtaacacaatataca 218  Q
    ||||||| |||||| || | ||| |||||||||| | |||||||||||||||||||||    
T  31288476 ttctcctgtctgcaagtcagaagcattcaaatagatatgataagtaacacaatataca 31288419  T

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Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 18675035 - 18675114
Alignment:
Q  36 ttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    |||||||||| ||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18675035 ttcaaaagatctttcatagagattatgattaaaaccatttatgctttcaaagtataaggatcttacttgtaacaacattc 18675114  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 18693077 - 18693169
Alignment:
Q  23 aaccaacttctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    ||||||| | || |||||||||| ||||| | ||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  18693077 aaccaacattttattcaaaagatctttcatagagattatgattaaaaccatttatgctttcaaggtataaggatcttacttgtaacaacattc 18693169  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 18685608 - 18685687
Alignment:
Q  36 ttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    |||||||||| ||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  18685608 ttcaaaagatctttcatagagattatgattaaaaccatttatgctttcaaagtataaggatcttacttgtaacaaaattc 18685687  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 18683352 - 18683431
Alignment:
Q  36 ttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    |||||||||| ||||| | | ||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||    
T  18683352 ttcaaaagatctttcatagaaattatgattaaaacaatttatgctttcaaagtataaggatcttacttgtaacaacattc 18683431  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 18719565 - 18719644
Alignment:
Q  36 ttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    |||||||||| ||||| | ||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||    
T  18719565 ttcaaaagatctttcatagagattatgattaaaaccatttttgctttcaaagtataaggatcttacttgtaacaatattc 18719644  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 18726862 - 18726941
Alignment:
Q  36 ttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    |||||||||| ||||| | ||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||    
T  18726862 ttcaaaagatctttcatagagattatgattaaaaccatttttgctttcaaagtataaggatcttacttgtaacaatattc 18726941  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 5082573 - 5082466
Alignment:
Q  2 aatatattactttgagataataaccaacttctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttac 101  Q
    ||||||||| |||  |||||| | ||| |||||||| ||| ||| |||| || ||| ||||||| ||||||||||| ||||||||| |||||||||||||    
T  5082573 aatatattattttaggataatgatcaatttctttttgaaaggatctttcccagagactatgattaaaagcatttatactttcaaagcataaggatcttac 5082474  T
Q  102 ttgtaaca 109  Q
    ||||||||    
T  5082473 ttgtaaca 5082466  T

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Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 18650916 - 18650995
Alignment:
Q  36 ttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    |||||||||| |||||   ||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||    
T  18650916 ttcaaaagatctttcattgagattatgattaaaaccatttatactttcaaagtataaggatcttacttgcaacaacattc 18650995  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 5082269 - 5082199
Alignment:
Q  148 tgatagctacggattctcctttctgcaggtgaaaagaattcaaataggtgtgataagtaacacaatataca 218  Q
    ||||||||| || ||||||||||||||||  |||   |||||||| | |||||||||||||||| ||||||    
T  5082269 tgatagctatggcttctcctttctgcaggaaaaagtgattcaaattgatgtgataagtaacacagtataca 5082199  T

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Target: scaffold0003 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 67958 - 67845
Alignment:
Q  2 aatatattactttgagataataaccaacttctttttcaaaagatttttcacaaagattatgatttaaagcatttatgctttcaaagtataaggatcttac 101  Q
    ||||||||| |||  |||||| | |||||||||||| ||||||| ||||  ||| |||||||||  ||| | ||||||||||||||||||||||||||||    
T  67958 aatatattattttcggataatgatcaacttctttttaaaaagatgtttcgaaaatattatgattataagaacttatgctttcaaagtataaggatcttac 67859  T
Q  102 ttgtaacaacattc 115  Q
    |||||||| |||||    
T  67858 ttgtaacagcattc 67845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 64247 - 64185
Alignment:
Q  53 aaagattatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    ||||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  64247 aaagattataattaaaagtatttatggtttcaaagtataaggatcttacttgtaacaacattc 64185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 67660 - 67590
Alignment:
Q  148 tgatagctacggattctcctttctgcaggtgaaaagaattcaaataggtgtgataagtaacacaatataca 218  Q
    ||||||||| || |||||| ||||||| || | ||| |||||||||| |||||||||||||||||||||||    
T  67660 tgatagctatggcttctccattctgcaagtcacaagcattcaaatagatgtgataagtaacacaatataca 67590  T

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Target: scaffold0349 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 17688 - 17630
Alignment:
Q  57 attatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    ||||||||| ||| |||||| |||||| |||||||||||||||| |||||||| |||||    
T  17688 attatgattaaaaccatttaagctttcgaagtataaggatcttatttgtaacaccattc 17630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 17510 - 17440
Alignment:
Q  148 tgatagctacggattctcctttctgcaggtgaaaagaattcaaataggtgtgataagtaacacaatataca 218  Q
    |||||| || || ||||||||||||||||  | ||| |||||| ||| |||||||||||||| ||||||||    
T  17510 tgatagatatggcttctcctttctgcagggcacaagcattcaagtagatgtgataagtaacataatataca 17440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 29270149 - 29270207
Alignment:
Q  57 attatgatttaaagcatttatgctttcaaagtataaggatcttacttgtaacaacattc 115  Q
    |||||||||  || |||||| |||||| |||||||||||||||| |||||||| |||||    
T  29270149 attatgattataaccatttaagctttcgaagtataaggatcttatttgtaacaccattc 29270207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 26140984 - 26140951
Alignment:
Q  185 attcaaataggtgtgataagtaacacaatataca 218  Q
    |||||||||| |||||||||||||||||||||||    
T  26140984 attcaaatagatgtgataagtaacacaatataca 26140951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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