View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20763_high_6 (Length: 411)

Name: NF20763_high_6
Description: NF20763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20763_high_6
NF20763_high_6
[»] chr3 (42 HSPs)
chr3 (1-411)||(23310388-23310798)
chr3 (115-308)||(32982270-32982463)
chr3 (116-304)||(51924364-51924553)
chr3 (117-176)||(37065971-37066030)
chr3 (209-305)||(19191410-19191505)
chr3 (209-307)||(24199325-24199425)
chr3 (117-182)||(43493619-43493684)
chr3 (117-162)||(52362644-52362689)
chr3 (117-190)||(54694934-54695007)
chr3 (118-162)||(16674301-16674345)
chr3 (126-193)||(23516932-23516999)
chr3 (117-179)||(14404665-14404727)
chr3 (209-307)||(16913791-16913888)
chr3 (117-183)||(17343742-17343808)
chr3 (117-163)||(33639652-33639698)
chr3 (118-164)||(37066607-37066653)
chr3 (209-282)||(19192207-19192279)
chr3 (117-182)||(43492199-43492264)
chr3 (118-163)||(52341341-52341386)
chr3 (117-182)||(54515652-54515717)
chr3 (211-307)||(24199968-24200063)
chr3 (124-179)||(15274035-15274090)
chr3 (124-179)||(40872934-40872989)
chr3 (124-179)||(40877255-40877310)
chr3 (148-294)||(8320099-8320244)
chr3 (119-237)||(20384237-20384355)
chr3 (117-179)||(44265930-44265992)
chr3 (117-182)||(17339830-17339895)
chr3 (117-174)||(19192304-19192361)
chr3 (117-162)||(48207603-48207648)
chr3 (119-174)||(5742421-5742476)
chr3 (119-174)||(5779380-5779435)
chr3 (117-177)||(8322263-8322323)
chr3 (209-297)||(17339912-17339999)
chr3 (117-157)||(29809280-29809320)
chr3 (117-161)||(35835421-35835465)
chr3 (117-161)||(35892138-35892182)
chr3 (209-297)||(43492281-43492368)
chr3 (117-157)||(46914915-46914955)
chr3 (117-161)||(47607197-47607241)
chr3 (115-163)||(48208368-48208416)
chr3 (115-163)||(48452917-48452965)
[»] chr2 (28 HSPs)
chr2 (117-308)||(34239437-34239628)
chr2 (162-411)||(41527071-41527323)
chr2 (347-411)||(34239329-34239393)
chr2 (124-185)||(529592-529653)
chr2 (118-175)||(34238822-34238879)
chr2 (126-183)||(528924-528981)
chr2 (117-162)||(13545369-13545414)
chr2 (117-162)||(41320013-41320058)
chr2 (117-182)||(2283941-2284006)
chr2 (117-182)||(2285042-2285107)
chr2 (117-237)||(16155978-16156098)
chr2 (118-162)||(41320782-41320826)
chr2 (119-182)||(36912703-36912766)
chr2 (117-243)||(16156629-16156755)
chr2 (117-162)||(13544602-13544647)
chr2 (260-305)||(16178115-16178160)
chr2 (117-190)||(29156156-29156229)
chr2 (117-181)||(6583206-6583270)
chr2 (118-182)||(9259981-9260045)
chr2 (124-167)||(8194270-8194313)
chr2 (252-307)||(20633113-20633168)
chr2 (115-157)||(24121398-24121440)
chr2 (115-161)||(32361999-32362045)
chr2 (117-174)||(23288905-23288962)
chr2 (117-182)||(32705672-32705737)
chr2 (117-182)||(36911592-36911657)
chr2 (118-163)||(41527758-41527803)
chr2 (209-297)||(2284023-2284110)
[»] chr5 (29 HSPs)
chr5 (144-308)||(8469267-8469431)
chr5 (347-411)||(8469479-8469543)
chr5 (117-262)||(7209574-7209722)
chr5 (118-286)||(7209064-7209230)
chr5 (117-175)||(8469799-8469857)
chr5 (124-185)||(8609212-8609273)
chr5 (117-297)||(19080181-19080350)
chr5 (117-182)||(25838446-25838511)
chr5 (117-307)||(19080806-19080985)
chr5 (124-163)||(19186445-19186484)
chr5 (117-164)||(41609014-41609061)
chr5 (209-307)||(20339664-20339761)
chr5 (124-185)||(8609938-8609999)
chr5 (117-190)||(27100354-27100427)
chr5 (209-297)||(3390993-3391080)
chr5 (117-161)||(22778135-22778179)
chr5 (117-179)||(20339781-20339843)
chr5 (118-196)||(25109892-25109970)
chr5 (118-196)||(25168984-25169062)
chr5 (117-183)||(25839642-25839708)
chr5 (124-190)||(42948149-42948215)
chr5 (118-163)||(2297188-2297233)
chr5 (117-162)||(41516464-41516509)
chr5 (117-157)||(10555383-10555423)
chr5 (117-157)||(23237045-23237085)
chr5 (117-157)||(23244363-23244403)
chr5 (117-157)||(27099544-27099584)
chr5 (117-157)||(33766489-33766529)
chr5 (117-157)||(42994481-42994521)
[»] chr1 (42 HSPs)
chr1 (117-273)||(39773298-39773454)
chr1 (117-262)||(51308625-51308770)
chr1 (119-286)||(39772824-39772990)
chr1 (119-164)||(4968931-4968976)
chr1 (117-162)||(17238478-17238523)
chr1 (209-307)||(50266263-50266360)
chr1 (117-162)||(6631320-6631365)
chr1 (117-162)||(6632087-6632132)
chr1 (117-214)||(18122311-18122408)
chr1 (117-162)||(19990280-19990325)
chr1 (117-190)||(28313844-28313917)
chr1 (117-182)||(42023210-42023275)
chr1 (118-182)||(35574877-35574941)
chr1 (118-297)||(50277903-50278071)
chr1 (118-297)||(50289571-50289739)
chr1 (117-160)||(17237709-17237752)
chr1 (117-182)||(8850458-8850523)
chr1 (117-182)||(10846727-10846792)
chr1 (117-182)||(22373276-22373341)
chr1 (117-182)||(35575980-35576045)
chr1 (119-212)||(39870918-39871011)
chr1 (117-190)||(47966999-47967071)
chr1 (118-182)||(8851696-8851760)
chr1 (118-162)||(16073322-16073366)
chr1 (118-174)||(19173228-19173284)
chr1 (118-177)||(22374848-22374907)
chr1 (117-163)||(16519380-16519426)
chr1 (193-239)||(18608966-18609012)
chr1 (117-203)||(19172645-19172731)
chr1 (119-161)||(29254657-29254699)
chr1 (252-305)||(5496322-5496375)
chr1 (119-164)||(16518492-16518537)
chr1 (117-162)||(28314578-28314623)
chr1 (118-307)||(51309071-51309259)
chr1 (117-157)||(1614922-1614962)
chr1 (209-297)||(2483196-2483283)
chr1 (118-174)||(5496442-5496498)
chr1 (118-174)||(10844576-10844632)
chr1 (10-66)||(17077967-17078023)
chr1 (117-237)||(20815820-20815940)
chr1 (209-297)||(22374444-22374531)
chr1 (209-297)||(35574958-35575045)
[»] chr8 (25 HSPs)
chr8 (118-234)||(32319757-32319873)
chr8 (209-307)||(39137945-39138042)
chr8 (209-307)||(35352291-35352388)
chr8 (209-297)||(18195319-18195406)
chr8 (118-286)||(32319234-32319403)
chr8 (117-182)||(3206472-3206537)
chr8 (251-306)||(5566292-5566347)
chr8 (116-182)||(18195236-18195302)
chr8 (124-161)||(5389684-5389721)
chr8 (252-305)||(41826771-41826824)
chr8 (209-297)||(3207189-3207276)
chr8 (207-307)||(10296107-10296206)
chr8 (118-174)||(10296936-10296992)
chr8 (117-196)||(14655825-14655904)
chr8 (111-146)||(39322568-39322603)
chr8 (124-190)||(5390141-5390207)
chr8 (117-175)||(14395136-14395194)
chr8 (209-307)||(18607591-18607688)
chr8 (259-308)||(9012083-9012132)
chr8 (117-174)||(14396659-14396716)
chr8 (29-98)||(40223569-40223638)
chr8 (118-174)||(18607713-18607769)
chr8 (117-161)||(19970556-19970600)
chr8 (117-161)||(21022209-21022253)
chr8 (118-174)||(41826648-41826704)
[»] chr4 (36 HSPs)
chr4 (152-307)||(14014873-14015027)
chr4 (252-307)||(55903168-55903223)
chr4 (115-181)||(5064461-5064527)
chr4 (209-307)||(8113336-8113433)
chr4 (117-182)||(6946524-6946589)
chr4 (119-287)||(22341475-22341632)
chr4 (117-182)||(26043724-26043789)
chr4 (117-297)||(23941645-23941823)
chr4 (126-181)||(41185560-41185615)
chr4 (124-190)||(22405308-22405374)
chr4 (126-164)||(54157295-54157333)
chr4 (117-182)||(1949921-1949986)
chr4 (117-182)||(1953498-1953563)
chr4 (117-174)||(6944737-6944794)
chr4 (117-182)||(13265512-13265577)
chr4 (117-182)||(26045037-26045102)
chr4 (117-190)||(27109770-27109843)
chr4 (117-305)||(37002943-37003124)
chr4 (117-214)||(47370958-47371055)
chr4 (209-305)||(31690154-31690249)
chr4 (207-307)||(38941175-38941274)
chr4 (118-161)||(32527551-32527594)
chr4 (127-190)||(53993678-53993741)
chr4 (117-175)||(5045881-5045939)
chr4 (209-307)||(6945498-6945595)
chr4 (6-52)||(7536718-7536764)
chr4 (252-305)||(5045762-5045815)
chr4 (31-116)||(23604940-23605025)
chr4 (127-160)||(23638373-23638406)
chr4 (117-182)||(56162244-56162309)
chr4 (117-182)||(56164150-56164215)
chr4 (209-297)||(8683653-8683740)
chr4 (117-157)||(15541113-15541153)
chr4 (117-145)||(35134456-35134484)
chr4 (209-297)||(56162326-56162413)
chr4 (209-297)||(56164046-56164133)
[»] scaffold0119 (2 HSPs)
scaffold0119 (117-214)||(3778-3875)
scaffold0119 (117-214)||(15833-15930)
[»] chr6 (23 HSPs)
chr6 (117-214)||(26666918-26667015)
chr6 (117-199)||(13703266-13703348)
chr6 (209-307)||(33707472-33707569)
chr6 (117-182)||(3645541-3645606)
chr6 (117-182)||(3646662-3646727)
chr6 (117-182)||(16008233-16008298)
chr6 (117-182)||(25136568-25136633)
chr6 (117-190)||(2479980-2480053)
chr6 (117-182)||(25133285-25133350)
chr6 (252-308)||(7190958-7191014)
chr6 (252-308)||(13220682-13220738)
chr6 (117-237)||(35073487-35073607)
chr6 (117-196)||(7191617-7191696)
chr6 (124-179)||(11324763-11324818)
chr6 (124-179)||(13220893-13220948)
chr6 (124-179)||(13225207-13225262)
chr6 (117-175)||(13220044-13220102)
chr6 (151-237)||(17551108-17551194)
chr6 (117-182)||(13701708-13701773)
chr6 (209-297)||(16008315-16008402)
chr6 (117-157)||(21777857-21777897)
chr6 (117-157)||(25344850-25344890)
chr6 (117-157)||(29414542-29414582)
[»] scaffold0169 (1 HSPs)
scaffold0169 (209-305)||(1397-1492)
[»] chr7 (17 HSPs)
chr7 (187-294)||(20343208-20343314)
chr7 (209-307)||(36670273-36670370)
chr7 (117-182)||(19386797-19386862)
chr7 (117-182)||(39832229-39832294)
chr7 (118-182)||(32021137-32021201)
chr7 (117-182)||(39830952-39831017)
chr7 (118-182)||(2396118-2396182)
chr7 (209-297)||(2396199-2396286)
chr7 (117-164)||(36671079-36671126)
chr7 (117-175)||(11511046-11511104)
chr7 (252-305)||(11511170-11511223)
chr7 (117-174)||(27168503-27168560)
chr7 (1-93)||(4501132-4501224)
chr7 (8-52)||(5714954-5714998)
chr7 (117-157)||(20009092-20009132)
chr7 (118-174)||(32020227-32020283)
chr7 (209-297)||(39831034-39831121)
[»] scaffold0008 (1 HSPs)
scaffold0008 (252-306)||(256964-257018)
[»] scaffold0039 (1 HSPs)
scaffold0039 (209-307)||(63556-63653)
[»] scaffold0110 (1 HSPs)
scaffold0110 (9-93)||(47670-47754)


Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 23310388 - 23310798
Alignment:
Q  1 tccttgatccataaatgttatgtttaaaatgattggttttgtcatctaaaaatgtctaacagcgcatcttcttatccgtttgtcttctattcatatgttg 100  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23310388 tccttgatccgtaaatgttatatttaaaatgattggttttgtcatctaaaaatgtctaacagcgcatcttcttatccgtttgtcttctattcatatgttg 23310487  T
Q  101 ctaatccttgatatatggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23310488 ctaatccttgatatatggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttg 23310587  T
Q  201 attattaataattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23310588 attattaataattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaatgacaaaacaattaataacttttaatttat 23310687  T
Q  301 tgattttgnnnnnnnnnnnnnncttttaattgattgannnnnnnnnattcacctcctttgcaaaaattatcacttcctttttcaattcttggactattta 400  Q
    ||||||||              |||||||||||||||         ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23310688 tgattttgtaaaaaaacaaaaacttttaattgattgatttttttttattcacctcctttgcaaaaattatcccttcctttttcaattcttggactattta 23310787  T
Q  401 tttacaatttt 411  Q
    |||||||||||    
T  23310788 tttacaatttt 23310798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 115 - 308
Target Start/End: Original strand, 32982270 - 32982463
Alignment:
Q  115 atggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  32982270 atggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatcaatcaatgatttaagttgattattaataattg 32982369  T
Q  215 atatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgattttg 308  Q
    |||||  |||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32982370 atatgacagactttaattttcttttctatgctagttaaacactcatcatcacaaaataacaaaacaattaataacttttaattgattgattttg 32982463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 304
Target Start/End: Original strand, 51924364 - 51924553
Alignment:
Q  116 tggatattttgactccaagagtaagtctata--gacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataatt 213  Q
    ||||||||||||||||| |||||||||||||  |||||||| ||||| ||| || || ||| |||||| ||  |||  ||||| ||||||| ||||||||    
T  51924364 tggatattttgactcca-gagtaagtctatatagacttacttcaaattttgacctttgattgtaatatcaactaatattttagattgattaataataatt 51924462  T
Q  214 gatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgat 304  Q
    |||||| ||||||||||||||  | | |||  |  || ||||||||||| |||| || ||| || |||||||| |||||||||| ||||||    
T  51924463 gatatgatagactttaatttttatgtatattttggttgaacactcatcaccacagaacaaccaagcaattaatgacttttaattgattgat 51924553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 37065971 - 37066030
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattct 176  Q
    ||||||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||    
T  37065971 ggatattttgactccaagagtaagtctctaaacttactccaaatctttgcccttaattct 37066030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 19191410 - 19191505
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatt 305  Q
    ||||||||||||||||||||||||   |||| ||| |||  | |||||| |||| ||||||||||||||||||| ||| |||||||||| |||||||    
T  19191410 taattgatatggtagactttaattccattttctattgta-gtcaacacttatcaccacaaaataacaaaacaataaatgacttttaattaattgatt 19191505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 307
Target Start/End: Original strand, 24199325 - 24199425
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtactta--aacactcatcatcacaaaataacaaaacaattaataacttttaatttattgattt 306  Q
    ||||||||||| ||||||||||||   |||| ||| ||| | |  |||||| |||||||||||||||||||||||| |||  ||||||||| ||||||||    
T  24199325 taattgatatgttagactttaattccattttctattgtagtcatcaacacttatcatcacaaaataacaaaacaataaatgtcttttaattgattgattt 24199424  T
Q  307 t 307  Q
    |    
T  24199425 t 24199425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 43493684 - 43493619
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  43493684 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 43493619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 52362644 - 52362689
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatct 162  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  52362644 ggatattttgactccaagagtaagtttatagacctactccaaatct 52362689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 54694934 - 54695007
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatg 190  Q
    ||||||||||||||||||||||| || | ||| ||||||||||||||| || || || ||||||||||| ||||    
T  54694934 ggatattttgactccaagagtaactcaaaagagttactccaaatcttgacccttcatcctaatattaattaatg 54695007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 16674345 - 16674301
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatct 162  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||    
T  16674345 gatattttgactcaaagagtaagtttatagacttactccaaatct 16674301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 23516999 - 23516932
Alignment:
Q  126 gactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatt 193  Q
    |||||||||||||| | || ||| ||||||||||||||| ||||||||| |||| ||||| |||||||    
T  23516999 gactccaagagtaaatgtaaagagttactccaaatcttgaccattaattgtaatcttaattaatgatt 23516932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 14404727 - 14404665
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaat 179  Q
    ||||||||||||| ||||||||||| ||   ||||||||||||||||| || |||||||||||    
T  14404727 ggatattttgacttcaagagtaagtgtaataacttactccaaatcttgacctttaattctaat 14404665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 16913888 - 16913791
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
    ||||||||||||||| |||||||| | |||| |||  ||  | |||||| |||| |||||||||||||||||||||||  |||||||||  ||||||||    
T  16913888 taattgatatggtaggctttaattctattttctattata-gtcaacacttatcaccacaaaataacaaaacaattaatgtcttttaattgtttgatttt 16913791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 17343808 - 17343742
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatta 183  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || |||||| ||||||||    
T  17343808 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattttaatatta 17343742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 33639698 - 33639652
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatctt 163  Q
    |||||| ||||||||||||||||||||| |||||||||||| |||||    
T  33639698 ggatatattgactccaagagtaagtctaaagacttactccagatctt 33639652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 37066653 - 37066607
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttg 164  Q
    |||||||||||| ||||||||||||| || |||||||||||||||||    
T  37066653 gatattttgacttcaagagtaagtctctaaacttactccaaatcttg 37066607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 19192279 - 19192207
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaat 282  Q
    ||||||||||||||| |||||||||  |||| ||| ||| |||| |||| |||| |||||||||||||||||||    
T  19192279 taattgatatggtaggctttaatttcattttctatcgtagttaa-cacttatcaccacaaaataacaaaacaat 19192207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 43492199 - 43492264
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    ||||||| |||||||| || ||||||||||||||    
T  43492199 ggatattttgactccaagagtaagtgtaatatcttactctaaatcttgacctttaattctaatatt 43492264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 52341341 - 52341386
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatctt 163  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||||    
T  52341341 gatatattgactccaagagtaagtctatacaattactccaaatctt 52341386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 54515717 - 54515652
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||  || ||||||||||||||    
T  54515717 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttaacctttaattctaatatt 54515652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 24200063 - 24199968
Alignment:
Q  211 attgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
    ||||||||||||| |||||||| | |||| |||  ||  | |||||| |||| |||||||||||||||||||||||  |||||||||  ||||||||    
T  24200063 attgatatggtaggctttaattctattttctattata-gtcaacacttatcaccacaaaataacaaaacaattaatgtcttttaattgtttgatttt 24199968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 15274090 - 15274035
Alignment:
Q  124 ttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaat 179  Q
    ||||||||||||||||||||| | |||||||||||||| || ||||| ||| ||||    
T  15274090 ttgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaat 15274035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 40872934 - 40872989
Alignment:
Q  124 ttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaat 179  Q
    ||||||||||||||||||||| | |||||||||||||| || ||||| ||| ||||    
T  40872934 ttgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaat 40872989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 40877310 - 40877255
Alignment:
Q  124 ttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaat 179  Q
    ||||||||||||||||||||| | |||||||||||||| || ||||| ||| ||||    
T  40877310 ttgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaat 40877255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 294
Target Start/End: Original strand, 8320099 - 8320244
Alignment:
Q  148 acttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgatatggtagactttaattttcttttttatggta 247  Q
    |||||||||||||||| ||  |||||| || ||| |||  |||  || | |||| || |||||| ||||||||||||||||||||||||| | |||   |    
T  8320099 acttactccaaatcttagcttttaattttattatcaattgatggcttggattgaataataataagtgatatggtagactttaattttcttatgtattaga 8320198  T
Q  248 cttaaacactcatcatcacaaaataacaaaacaattaataactttta 294  Q
     || ||||||||||  | |||||||  |||||||||||| |||||||    
T  8320199 gtt-aacactcatcccctcaaaatagtaaaacaattaattactttta 8320244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 20384237 - 20384355
Alignment:
Q  119 atattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgatat 218  Q
    ||||||||| ||| | ||||||| | |  ||||||||||||||||||   |||||| || | | ||| || | ||||| ||||||| |||||| || |||    
T  20384237 atattttgattccgaaagtaagtttgtttacttactccaaatcttggattttaattgtattgtcaattaaaggtttagattgattaataataaatggtat 20384336  T
Q  219 ggtagactttaattttctt 237  Q
    |||||||| ||||||||||    
T  20384337 ggtagactataattttctt 20384355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 44265930 - 44265992
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaat 179  Q
    ||||||||||||||||||||||||| ||   |||||||| |||||||| |  |||||||||||    
T  44265930 ggatattttgactccaagagtaagtgtaataacttactctaaatcttgacatttaattctaat 44265992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 17339830 - 17339895
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    ||||| |||||||||| || |||||| |||||||    
T  17339830 ggatattttgactccaagagtaagtgtaatatcttacaccaaatcttgacctttaattttaatatt 17339895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 19192361 - 19192304
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaatt 174  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||    
T  19192361 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaatt 19192304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 48207603 - 48207648
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatct 162  Q
    |||||| |||||||||||| |||||||| ||||||| |||||||||    
T  48207603 ggatatattgactccaagaataagtctaaagacttattccaaatct 48207648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 5742476 - 5742421
Alignment:
Q  119 atattttgactccaagagtaagt-ctatagacttactccaaatcttggccattaatt 174  Q
    ||||||||||||||||||||||| | ||| ||||||||||||||||| || ||||||    
T  5742476 atattttgactccaagagtaagtgcaata-acttactccaaatcttgacctttaatt 5742421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 5779435 - 5779380
Alignment:
Q  119 atattttgactccaagagtaagt-ctatagacttactccaaatcttggccattaatt 174  Q
    ||||||||||||||||||||||| | ||| ||||||||||||||||| || ||||||    
T  5779435 atattttgactccaagagtaagtgcaata-acttactccaaatcttgacctttaatt 5779380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 8322323 - 8322263
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattcta 177  Q
    ||||||||||||||||||||||||| |    |||||||| ||||||| ||| |||||||||    
T  8322323 ggatattttgactccaagagtaagtttggttacttactctaaatctttgcctttaattcta 8322263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 17339912 - 17339999
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||| ||||||||||||   |||| ||| ||| |||| |||| ||||  |||||||||||||||||| |||  |||||||||    
T  17339912 taattgatatgatagactttaattccattttctattgtagttaa-cacttatcactacaaaataacaaaacaataaatgtcttttaatt 17339999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 29809320 - 29809280
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactcca 157  Q
    ||||||||||||||||||||||| |||| ||| ||||||||    
T  29809320 ggatattttgactccaagagtaattctaaagagttactcca 29809280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 35835421 - 35835465
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatc 161  Q
    ||||||||||||||||||||||| ||| | || ||||||||||||    
T  35835421 ggatattttgactccaagagtaactcttttgagttactccaaatc 35835465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 35892138 - 35892182
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatc 161  Q
    ||||||||||||||||||||||| ||| | || ||||||||||||    
T  35892138 ggatattttgactccaagagtaactcttttgagttactccaaatc 35892182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 43492281 - 43492368
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||| ||||||||||||   |||| ||| |||  | |||||| |||| ||||||||||||||||||| |||  |||||||||    
T  43492281 taattgatatgatagactttaattccattttctattgta-gtcaacacttatcaccacaaaataacaaaacaataaatgtcttttaatt 43492368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 46914955 - 46914915
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactcca 157  Q
    ||||||||||||||||||||||| |||| ||| ||||||||    
T  46914955 ggatattttgactccaagagtaactctaaagagttactcca 46914915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 47607197 - 47607241
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatc 161  Q
    |||||| ||||||| ||||||||||| ||||| ||||||||||||    
T  47607197 ggatatattgactcgaagagtaagtcaatagagttactccaaatc 47607241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 48208416 - 48208368
Alignment:
Q  115 atggatattttgactccaagagtaagtctatagacttactccaaatctt 163  Q
    |||||||| |||||||||||||||| || | ||| ||||||||||||||    
T  48208416 atggatatattgactccaagagtaactcaaaagaattactccaaatctt 48208368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 48452917 - 48452965
Alignment:
Q  115 atggatattttgactccaagagtaagtctatagacttactccaaatctt 163  Q
    |||||||| ||||||| ||||||||||||| ||| |||||| |||||||    
T  48452917 atggatatattgactctaagagtaagtctaaagagttactcaaaatctt 48452965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 9e-83; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 117 - 308
Target Start/End: Complemental strand, 34239628 - 34239437
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgat 216  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||  |||||||| |||||||||||||||||||||||||    
T  34239628 ggatattttgactccaagagtaagtctatagatttactccaaatcttcgtcattaattctaatagcaatcaatggtttaggttgattattaataattgat 34239529  T
Q  217 atggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgattttg 308  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34239528 atggtagactttaattttcttttctatggtagttaaacactcatcatcacaaaataacaaaacaattaataacttttaattgattgattttg 34239437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 162 - 411
Target Start/End: Original strand, 41527071 - 41527323
Alignment:
Q  162 ttggccattaattctaatattaatcaatgatttaggttgattattaataattgatatggtagactttaattttcttttttatggtacttaaacactcatc 261  Q
    |||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||    
T  41527071 ttggtcatttattctaatattaatcaatggtttaggttgattattaataattgatatggtagactttaattttcttttctatgctagttaaacactcatc 41527170  T
Q  262 atcacaaaataacaaaacaattaataacttttaatttattgattttg---nnnnnnnnnnnnnncttttaattgattgannnnnnnnnattcacctcctt 358  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||                 |||||||||||||||         ||||||||||||    
T  41527171 atcacaaaataacaaaacaattatcaacttttaattgattgattttgtaaaaaaaaagaaaaaacttttaattgattgatttttttttattcacctcctt 41527270  T
Q  359 tgcaaaaattatcacttcctttttcaattcttggactatttatttacaatttt 411  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||| ||||    
T  41527271 tgcaaaaattatcccttcctttttcaattcttggactatttacttacactttt 41527323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 347 - 411
Target Start/End: Complemental strand, 34239393 - 34239329
Alignment:
Q  347 attcacctcctttgcaaaaattatcacttcctttttcaattcttggactatttatttacaatttt 411  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  34239393 attcacctcctttgcaaaaattatcccttcctttttcaattcttggactatttatttacactttt 34239329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 529653 - 529592
Alignment:
Q  124 ttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaat 185  Q
    |||||||||||||||||| || |||||||||||||||||| |||||||||| ||||||||||    
T  529653 ttgactccaagagtaagtataaagacttactccaaatcttagccattaattttaatattaat 529592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 34238822 - 34238879
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattc 175  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||    
T  34238822 gatattttgactccaaaagtaagtctatagacttactccaaatcttagcctttaattc 34238879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 528924 - 528981
Alignment:
Q  126 gactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatta 183  Q
    |||||||||||||||| || ||||||||||||||||||| ||||||||| ||||||||    
T  528924 gactccaagagtaagtataaagacttactccaaatcttgaccattaattttaatatta 528981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 13545414 - 13545369
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatct 162  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  13545414 ggatattttgactccaagagtaagtttatagacttactccaaatct 13545369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 41320013 - 41320058
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatct 162  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  41320013 ggatattttgactccaagagtaagtttatagacttactccaaatct 41320058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 2283941 - 2284006
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  2283941 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 2284006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 2285107 - 2285042
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  2285107 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 2285042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 237
Target Start/End: Original strand, 16155978 - 16156098
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgat 216  Q
    ||||||||||||||||| ||||||| |    |||||||||||||||| ||| || ||| || ||| |||  |||  || | |||| || |||||| ||||    
T  16155978 ggatattttgactccaatagtaagtttggttacttactccaaatcttagcctttgattttattatcaattgatggcttggattgaataataataagtgat 16156077  T
Q  217 atggtagactttaattttctt 237  Q
    |||||||||||||||||||||    
T  16156078 atggtagactttaattttctt 16156098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 41320826 - 41320782
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatct 162  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||    
T  41320826 gatattttgactccaatagtaagtttatagacttactccaaatct 41320782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 36912766 - 36912703
Alignment:
Q  119 atattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  36912766 atattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 36912703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 243
Target Start/End: Complemental strand, 16156755 - 16156629
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgat 216  Q
    ||||||||||||||||||| ||||| |    ||||||| |||||||| ||| ||| ||||| ||| |||  |||  || | |||| || |||||| ||||    
T  16156755 ggatattttgactccaagaataagtttggttacttacttcaaatcttagcctttagttctattatcaattgatggcttggattgaataataataagtgat 16156656  T
Q  217 atggtagactttaattttcttttttat 243  Q
    || |||||||||||||||||| |||||    
T  16156655 atagtagactttaattttcttctttat 16156629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 13544602 - 13544647
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatct 162  Q
    ||||||||||||| ||||||||||| |||||||||| |||||||||    
T  13544602 ggatattttgacttcaagagtaagtttatagacttattccaaatct 13544647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 16178115 - 16178160
Alignment:
Q  260 tcatcacaaaataacaaaacaattaataacttttaatttattgatt 305  Q
    |||||||||||||||||||||||||||  ||||||||| |||||||    
T  16178115 tcatcacaaaataacaaaacaattaatgtcttttaattgattgatt 16178160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 29156156 - 29156229
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatg 190  Q
    ||||||||||||||||||||||| || | ||| |||||||||||| || || || || ||||||||||| ||||    
T  29156156 ggatattttgactccaagagtaactcaaaagagttactccaaatcctgacccttcatcctaatattaattaatg 29156229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 6583270 - 6583206
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatat 181  Q
    ||||||||||||||||||||||||| ||    ||||||| |||||||| || |||||||||||||    
T  6583270 ggatattttgactccaagagtaagtataatatcttactcaaaatcttgacctttaattctaatat 6583206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 9259981 - 9260045
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||| |||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  9259981 gatatttggactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 9260045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 8194313 - 8194270
Alignment:
Q  124 ttgactccaagagtaagtctatagacttactccaaatcttggcc 167  Q
    ||||||||||||||||||||| ||| |||||||||||| |||||    
T  8194313 ttgactccaagagtaagtctaaagagttactccaaatcatggcc 8194270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 20633113 - 20633168
Alignment:
Q  252 aacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
    |||||| |||| ||||||||||||||||||| |||  ||||||||| |||||||||    
T  20633113 aacacttatcaccacaaaataacaaaacaataaatgtcttttaattgattgatttt 20633168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 24121398 - 24121440
Alignment:
Q  115 atggatattttgactccaagagtaagtctatagacttactcca 157  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||    
T  24121398 atggatattttgactccaagagtaactctaaagagttactcca 24121440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 32362045 - 32361999
Alignment:
Q  115 atggatattttgactccaagagtaagtctatagacttactccaaatc 161  Q
    |||||||| | ||||||||||||||||||||||||||  ||||||||    
T  32362045 atggatatatcgactccaagagtaagtctatagactttttccaaatc 32361999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 23288962 - 23288905
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaatt 174  Q
    |||||||||||||| |||||||||| ||   ||||||||||||||||| || ||||||    
T  23288962 ggatattttgactctaagagtaagtgtaataacttactccaaatcttgacctttaatt 23288905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 32705737 - 32705672
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||| | ||    |||||||||||| ||| || ||||||||||||||    
T  32705737 ggatattttgactccaagagtaaatgtaatatcttactccaaattttgacctttaattctaatatt 32705672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 36911592 - 36911657
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||| || |||||||| || ||||||||||||||    
T  36911592 ggatattttgactccaagagtaagtgtaatatcttattctaaatcttgacctttaattctaatatt 36911657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 41527803 - 41527758
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatctt 163  Q
    |||||||| |||| |||||||| |||||| ||||||||||||||||    
T  41527803 gatattttaactctaagagtaaatctatatacttactccaaatctt 41527758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 2284023 - 2284110
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||| ||| |||||||||  |||| ||| ||| | || |||| |||| ||||||||||||||||||| |||  |||||||||    
T  2284023 taattgatatgataggctttaatttcattttctattgtagtcaa-cacttatcaccacaaaataacaaaacaataaatgtcttttaatt 2284110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 5e-69; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 144 - 308
Target Start/End: Original strand, 8469267 - 8469431
Alignment:
Q  144 atagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgatatggtagactttaattttcttttttat 243  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  8469267 atagacttgctccaaatcttggccattaattctaatatcaatcaatggtttaagttgattattaataattgatatggtagactttaattttcttttctat 8469366  T
Q  244 ggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgattttg 308  Q
    | || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8469367 gctagttaaacactcatcatcacaaaataacaaaacaattaataacttttaattgattgattttg 8469431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 347 - 411
Target Start/End: Original strand, 8469479 - 8469543
Alignment:
Q  347 attcacctcctttgcaaaaattatcacttcctttttcaattcttggactatttatttacaatttt 411  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||    
T  8469479 attcacctcctttgcaaaaattatcccttcctttttcaattattggactatttatttacactttt 8469543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 117 - 262
Target Start/End: Complemental strand, 7209722 - 7209574
Alignment:
Q  117 ggatattttgactccaaga---gtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataatt 213  Q
    |||||||||||||||||||   ||||||||||  ||||||||||||||||     |||| |||||||| ||| |||| ||||| ||||||  ||||||||    
T  7209722 ggatattttgactccaagaagagtaagtctattaacttactccaaatcttaatatttaactctaatatcaattaatggtttagattgattcataataatt 7209623  T
Q  214 gatatggtagactttaattttcttttttatggtacttaaacactcatca 262  Q
    |||||| |||||||||||||| || | ||| ||| ||||||| ||||||    
T  7209622 gatatgatagactttaattttattctctattgtagttaaacattcatca 7209574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 118 - 286
Target Start/End: Original strand, 7209064 - 7209230
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgata 217  Q
    |||||||||||||||||||||||| | |  |||||||||||||||| ||| |||||||||  ||||   |||| ||||| ||||||| |||||| |||||    
T  7209064 gatattttgactccaagagtaagt-tgtctacttactccaaatcttagcctttaattctataattagctaatggtttagattgattaataataagtgata 7209162  T
Q  218 tggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaat 286  Q
       ||  ||||||||||||||| ||| | | || ||||||||||||| ||||||  |||||||||||||    
T  7209163 caataagctttaattttcttttctattggagtt-aacactcatcatctcaaaatggcaaaacaattaat 7209230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 8469857 - 8469799
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattc 175  Q
    ||||||||||||||||||||||| | ||||||||||||| ||||||| ||| |||||||    
T  8469857 ggatattttgactccaagagtaaatttatagacttactctaaatcttagcctttaattc 8469799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 8609212 - 8609273
Alignment:
Q  124 ttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaat 185  Q
    |||||||||||||||||| || | | |||||||||||||| |||||||||| ||||||||||    
T  8609212 ttgactccaagagtaagtataaatagttactccaaatcttagccattaattttaatattaat 8609273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 297
Target Start/End: Original strand, 19080181 - 19080350
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgat 216  Q
    ||||||||||||||||||||||||| ||    ||||||| |||||||| || ||||||| ||||||  | ||||| |||| ||          |||||||    
T  19080181 ggatattttgactccaagagtaagtgtaatatcttactctaaatcttgacctttaattccaatattggttaatgacttagatt----------aattgat 19080270  T
Q  217 atggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||| |||||||||||||  |||| ||| ||| | || |||| |||||||||||||||||||||||| |||  |||||||||    
T  19080271 atgatagactttaatttcattttctattgtagtcaa-cacttatcatcacaaaataacaaaacaataaatgtcttttaatt 19080350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 25838446 - 25838511
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  25838446 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 25838511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 307
Target Start/End: Complemental strand, 19080985 - 19080806
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgat 216  Q
    ||||||||||||| ||||||||||| ||    |||||||||||||||| || ||||||||||||||  | ||||| ||||          | ||||||||    
T  19080985 ggatattttgacttcaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatattggttaatgacttag----------attaattgat 19080896  T
Q  217 atggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
    ||| ||||||||||||   |||| ||| |||  | |||||| |||| ||||||||||||||||||| |||  |||||||||  ||||||||    
T  19080895 atgatagactttaattcaattttctattgta-gtcaacacttatcaccacaaaataacaaaacaataaatgtcttttaattgcttgatttt 19080806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 19186445 - 19186484
Alignment:
Q  124 ttgactccaagagtaagtctatagacttactccaaatctt 163  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  19186445 ttgactccaagagtaagtctaaagacttactccaaatctt 19186484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 41609061 - 41609014
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttg 164  Q
    ||||||||||||| ||||||||||||| || |||||||||||||||||    
T  41609061 ggatattttgacttcaagagtaagtctctaaacttactccaaatcttg 41609014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 20339761 - 20339664
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
    ||||||||||||||| |||||||||  |||| ||| ||| | || |||| |||| || |||||||||||||||| |||  ||||||||| |||||||||    
T  20339761 taattgatatggtaggctttaatttcattttctattgtagtcaa-cacttatcaccagaaaataacaaaacaataaatgtcttttaattgattgatttt 20339664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 8609999 - 8609938
Alignment:
Q  124 ttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaat 185  Q
    ||||||| |||||||||  || ||| ||||||||||||||| ||||||||| ||||||||||    
T  8609999 ttgactcaaagagtaagcataaagagttactccaaatcttgaccattaattttaatattaat 8609938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 27100427 - 27100354
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatg 190  Q
    ||||||||||||||||||||||| |||| | | |||||||| ||||| |||||| ||| |||||| ||| ||||    
T  27100427 ggatattttgactccaagagtaactctaaaaagttactccacatcttagccattgattttaatatgaattaatg 27100354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 3391080 - 3390993
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||||||| ||||||||   |||||||| ||| | || |||| |||| ||||||||||||||||||| ||| || |||||||    
T  3391080 taattgatatggtaggctttaattccattttttattgtagtcaa-cacttatcaccacaaaataacaaaacaataaatgacatttaatt 3390993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 22778179 - 22778135
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatc 161  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||    
T  22778179 ggatatattgacttcaagagtaagtcaatagacttactccaaatc 22778135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 20339843 - 20339781
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaat 179  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||| |||    
T  20339843 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattccaat 20339781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 25109970 - 25109892
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttag 196  Q
    |||||||||||||||||||||||| | |  |||||||||||||| || || ||||||  |||||| || ||||| ||||    
T  25109970 gatattttgactccaagagtaagtgtgttaacttactccaaatcatgacctttaatttcaatattgattaatgacttag 25109892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 25169062 - 25168984
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttag 196  Q
    |||||||||||||||||||||||| | |  |||||||||||||| || || ||||||  |||||| || ||||| ||||    
T  25169062 gatattttgactccaagagtaagtgtgttaacttactccaaatcatgacctttaatttcaatattgattaatgacttag 25168984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 25839708 - 25839642
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatta 183  Q
    |||||||||||||| |||||||||| ||    ||||||| |||||||| || |||||||||||||||    
T  25839708 ggatattttgactcaaagagtaagtgtaatatcttactctaaatcttgacctttaattctaatatta 25839642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 42948215 - 42948149
Alignment:
Q  124 ttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatg 190  Q
    ||||||||||||||||||||| ||| ||||||| |||| || || |||||| ||||| || ||||||    
T  42948215 ttgactccaagagtaagtctaaagagttactcccaatcatgacctttaattttaataatagtcaatg 42948149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 2297233 - 2297188
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatctt 163  Q
    ||||| |||| |||||||||||| ||||| ||||||||||||||||    
T  2297233 gatatattgaatccaagagtaagactatatacttactccaaatctt 2297188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 41516464 - 41516509
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatct 162  Q
    |||||||||||||| |||||||  | ||||||||||||||||||||    
T  41516464 ggatattttgactctaagagtatatttatagacttactccaaatct 41516509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 10555383 - 10555423
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactcca 157  Q
    |||||| ||||||||||||||||||||| ||| ||||||||    
T  10555383 ggatatattgactccaagagtaagtctaaagagttactcca 10555423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 23237045 - 23237085
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactcca 157  Q
    |||||| ||||||||||||||||||||| ||| ||||||||    
T  23237045 ggatatattgactccaagagtaagtctaaagagttactcca 23237085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 23244403 - 23244363
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactcca 157  Q
    |||||| ||||||||||||||||||||| ||| ||||||||    
T  23244403 ggatatattgactccaagagtaagtctaaagagttactcca 23244363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 27099544 - 27099584
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactcca 157  Q
    ||||||||||||||||||||||| |||| ||| ||||||||    
T  27099544 ggatattttgactccaagagtaactctaaagagttactcca 27099584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 33766489 - 33766529
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactcca 157  Q
    |||||| ||||||||||||||||||||| ||| ||||||||    
T  33766489 ggatatattgactccaagagtaagtctaaagagttactcca 33766529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 42994481 - 42994521
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactcca 157  Q
    |||||| ||||||||||||||||||||| ||| ||||||||    
T  42994481 ggatatattgactccaagagtaagtctaaagagttactcca 42994521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 117 - 273
Target Start/End: Complemental strand, 39773454 - 39773298
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgat 216  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||| || |||| |||||||||||| |||||||||| ||||||  |||||||||||    
T  39773454 ggatattttgactccaagagtaagtctattaacttactccaaatcttgacctttaactctaatattaattaatgatttagattgattcataataattgat 39773355  T
Q  217 atggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataa 273  Q
     || | |||||||||||| || | ||| ||| |||||||||||||| || |||||||    
T  39773354 gtgatggactttaattttattctctattgtagttaaacactcatcaccataaaataa 39773298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 117 - 262
Target Start/End: Original strand, 51308625 - 51308770
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgat 216  Q
    ||||||||||||| |||||||||||| ||  |||||||| |||||||| |  |||| |||||||| ||| |||| ||||| ||||||  |||||||||||    
T  51308625 ggatattttgacttcaagagtaagtccattaacttactctaaatcttgacttttaactctaatatcaattaatggtttagattgattcataataattgat 51308724  T
Q  217 atggtagactttaattttcttttttatggtacttaaacactcatca 262  Q
    ||| | |||||||||||| || | ||| ||| ||||| ||||||||    
T  51308725 atgatggactttaattttattctctattgtagttaaaaactcatca 51308770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 119 - 286
Target Start/End: Original strand, 39772824 - 39772990
Alignment:
Q  119 atattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgatat 218  Q
    ||||||||||||||||||||||| | |   ||||||||||||||| ||| |||||||||  ||||   |||||||||| ||||||| |||||| |||||     
T  39772824 atattttgactccaagagtaagtttgtctccttactccaaatcttagcctttaattctataattagctaatgatttagattgattaataataagtgatac 39772923  T
Q  219 ggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaat 286  Q
      ||  ||||||||||||||| ||| | | || ||||||||||||  ||||||   ||||||||||||    
T  39772924 aataagctttaattttcttttctattgaagtt-aacactcatcatttcaaaatggaaaaacaattaat 39772990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 4968976 - 4968931
Alignment:
Q  119 atattttgactccaagagtaagtctatagacttactccaaatcttg 164  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  4968976 atattttgactccaagagtaagtctataaacttactccaaatcttg 4968931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 17238523 - 17238478
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatct 162  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  17238523 ggatattttgactccaagagtaagtttatagacttactccaaatct 17238478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 307
Target Start/End: Original strand, 50266263 - 50266360
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
    ||||||||||| |||||||||||||| |||| ||| | | | |  || ||||||||| ||||||| ||||||||||||| ||||||||| |||||||||    
T  50266263 taattgatatgatagactttaattttattttatattgga-tgacgcaatcatcatcataaaataataaaacaattaatatcttttaattgattgatttt 50266360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 6631320 - 6631365
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatct 162  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||    
T  6631320 ggatattttgactccaagggtaagtttatagacttactccaaatct 6631365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 6632132 - 6632087
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatct 162  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||    
T  6632132 ggatatttagactccaagagtaagtttatagacttactccaaatct 6632087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 18122408 - 18122311
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattg 214  Q
    ||||||||||||||||| ||||||| | |    |||||||| ||||||||| ||||||||||||| ||| |||| || || ||||||| |||||||||    
T  18122408 ggatattttgactccaatagtaagtttgttatgttactccacatcttggcctttaattctaatatcaattaatggttaagattgattaataataattg 18122311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 19990280 - 19990325
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatct 162  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||    
T  19990280 ggatatattgactccaagagtaagtctaaagacttactccaaatct 19990325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 28313844 - 28313917
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatg 190  Q
    ||||||||||||||||||||||| || | ||| ||||||||||||||| || || || ||||||||||| ||||    
T  28313844 ggatattttgactccaagagtaactcaaaagagttactccaaatcttgacccttcatcctaatattaattaatg 28313917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 42023210 - 42023275
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||   ||||||||||||||||| || |||||| |||||||    
T  42023210 ggatattttgactccaagagtaagtgtaataacttactccaaatcttgacctttaattgtaatatt 42023275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 35574877 - 35574941
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    |||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  35574877 gatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 35574941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 297
Target Start/End: Complemental strand, 50278071 - 50277903
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgata 217  Q
    |||||||||||||||||||||||| | |  |||||||||||||| || || ||||||  |||||| || ||||| ||||          | |||||||||    
T  50278071 gatattttgactccaagagtaagtgttttaacttactccaaatcatgacctttaatttcaatattgattaatgacttag----------attaattgata 50277982  T
Q  218 tggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||||||||| || | ||| | |  | ||||||||||| | |||||||| ||||||||||||  |||||||||    
T  50277981 tggtagactttaattttattatatattgga-gtcaacactcatcaccccaaaataataaaacaattaatgtcttttaatt 50277903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 297
Target Start/End: Complemental strand, 50289739 - 50289571
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgata 217  Q
    |||||||||||||||||||||||| | |  |||||||||||||| || || ||||||  |||||| || ||||| ||||          | |||||||||    
T  50289739 gatattttgactccaagagtaagtgttttaacttactccaaatcatgacctttaatttcaatattgattaatgacttag----------attaattgata 50289650  T
Q  218 tggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||||||||| || | ||| | |  | ||||||||||| | |||||||| ||||||||||||  |||||||||    
T  50289649 tggtagactttaattttattatatattgga-gtcaacactcatcaccccaaaataataaaacaattaatgtcttttaatt 50289571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 17237709 - 17237752
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaat 160  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||    
T  17237709 ggatattttgactgcaagagtaagtttatagacttactccaaat 17237752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 8850458 - 8850523
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    ||||||| |||||||| || ||||||||||||||    
T  8850458 ggatattttgactccaagagtaagtgtaatatcttactctaaatcttgacctttaattctaatatt 8850523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 10846792 - 10846727
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||| ||||||||| || ||||||||||||||    
T  10846792 ggatattttgactccaagagtaagtgtaatatcttacttcaaatcttgacctttaattctaatatt 10846727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 22373276 - 22373341
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    |||||||||||||| |||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  22373276 ggatattttgactcaaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 22373341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 35576045 - 35575980
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    ||||||||||||||||  | ||||||||||||||    
T  35576045 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgatctttaattctaatatt 35575980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 212
Target Start/End: Original strand, 39870918 - 39871011
Alignment:
Q  119 atattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataat 212  Q
    ||||||||||||||| ||||||| | |    |||||||| ||||||||| ||||||||||||| ||| |||| || || ||||||| |||||||    
T  39870918 atattttgactccaatagtaagtttgttatgttactccacatcttggcctttaattctaatatcaattaatggttaagattgattaataataat 39871011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 47966999 - 47967071
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatg 190  Q
    |||||| |||||||||||||||||| | || | |||||||||||||| ||| ||||||  ||||||||||||||    
T  47966999 ggatatattgactccaagagtaagtgtttaaagttactccaaatcttagcc-ttaatttcaatattaatcaatg 47967071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 8851760 - 8851696
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    |||||||||||||||||||||||| ||    |||||| ||||||||| || ||||||||||||||    
T  8851760 gatattttgactccaagagtaagtataatatcttacttcaaatcttgacctttaattctaatatt 8851696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 16073366 - 16073322
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatct 162  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||||    
T  16073366 gatatattgactccaagagtaagtctaaagacttattccaaatct 16073322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 19173284 - 19173228
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaatt 174  Q
    |||||||||||||||||||||||| | |  |||||||| ||||||| ||||||||||    
T  19173284 gatattttgactccaagagtaagtttgtttacttactctaaatcttagccattaatt 19173228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 22374907 - 22374848
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattcta 177  Q
    |||||||||||||||||||||||| ||    |||||||||||||||| || |||||||||    
T  22374907 gatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattcta 22374848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 16519426 - 16519380
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatctt 163  Q
    ||||||||||||||||||||||||| ||   ||||||||||||||||    
T  16519426 ggatattttgactccaagagtaagtgtaataacttactccaaatctt 16519380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 18609012 - 18608966
Alignment:
Q  193 ttaggttgattattaataattgatatggtagactttaattttctttt 239  Q
    |||| ||||||| |||||| |||||||||||||||||||||| ||||    
T  18609012 ttagattgattaataataagtgatatggtagactttaattttttttt 18608966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 19172645 - 19172731
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgatt 203  Q
    |||||||||||||||||||||||||   |  ||||||||  ||||||| || ||||||||| ||| ||| ||||| |||| ||||||    
T  19172645 ggatattttgactccaagagtaagttcttttacttactctcaatcttgacctttaattctattatcaattaatgacttagattgatt 19172731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 29254657 - 29254699
Alignment:
Q  119 atattttgactccaagagtaagtctatagacttactccaaatc 161  Q
    ||||||| ||||||||||||||| | |||||||||||||||||    
T  29254657 atattttaactccaagagtaagtttgtagacttactccaaatc 29254699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 5496375 - 5496322
Alignment:
Q  252 aacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatt 305  Q
    |||||| |||| ||||||||||||||||||| ||| || ||||||| |||||||    
T  5496375 aacacttatcaccacaaaataacaaaacaataaatgacatttaattaattgatt 5496322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 16518492 - 16518537
Alignment:
Q  119 atattttgactccaagagtaagtctatagacttactccaaatcttg 164  Q
    ||||||||||||||||||||||| ||   |||||||||||||||||    
T  16518492 atattttgactccaagagtaagtgtaataacttactccaaatcttg 16518537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 28314623 - 28314578
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatct 162  Q
    ||||||||||||||||||||||| || | ||| |||||||||||||    
T  28314623 ggatattttgactccaagagtaactcaaaagatttactccaaatct 28314578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 307
Target Start/End: Complemental strand, 51309259 - 51309071
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgata 217  Q
    |||||||||||||||||||||||| | |  |||||||  |||| || ||| |||||| ||  ||||   |||| ||||| ||||||| |||||| |||||    
T  51309259 gatattttgactccaagagtaagtttgtctacttactttaaattttagcctttaattttataattagctaatggtttagattgattaataataagtgata 51309160  T
Q  218 tggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
       ||  |||||||||| |||| ||| | | || ||||||||||||  ||||||  |||||||||||||    ||||||||||| |||||    
T  51309159 caataagctttaattttattttctattggagtt-aacactcatcatttcaaaatggcaaaacaattaatgcaatttaatttatttatttt 51309071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 1614962 - 1614922
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactcca 157  Q
    ||||||||||||||||||||||| |||| ||| ||||||||    
T  1614962 ggatattttgactccaagagtaactctaaagagttactcca 1614922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 2483283 - 2483196
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||| ||||||||||||   |||| ||| |||  | |||||| |||| ||||||||||||||||||| |||  |||||||||    
T  2483283 taattgatatgatagactttaattcaattttctattgta-gtcaacacttatcaccacaaaataacaaaacaataaatgtcttttaatt 2483196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 5496498 - 5496442
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaatt 174  Q
    |||||||||||||||||||||||| ||    |||||||||||||||| || ||||||    
T  5496498 gatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaatt 5496442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 10844576 - 10844632
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaatt 174  Q
    |||||||||||||||||||||| | ||   ||||||||||||||||| || ||||||    
T  10844576 gatattttgactccaagagtaattataataacttactccaaatcttgacctttaatt 10844632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 17077967 - 17078023
Alignment:
Q  10 cataaatgttatgtttaaaatgattggttttgtcatctaaaaatgtctaacagcgca 66  Q
    |||||||||| |||| |  ||||||||||||| |||||||||| ||||||| |||||    
T  17077967 cataaatgttgtgttcatgatgattggttttgccatctaaaaaagtctaacggcgca 17078023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 237
Target Start/End: Original strand, 20815820 - 20815940
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgat 216  Q
    ||||||||| |||| |||||||||| | |  |||||||||||||||| | | |||||| || | | ||| |||| |||   ||||||| |||||| || |    
T  20815820 ggatattttaactcgaagagtaagtttgttcacttactccaaatcttagtctttaattgtattttcaattaatggtttgaattgattaataataagtggt 20815919  T
Q  217 atggtagactttaattttctt 237  Q
    ||||||| || ||||||||||    
T  20815920 atggtaggctataattttctt 20815940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 22374531 - 22374444
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||| |||||||||||| | |||| ||| ||| | || |||| |||| |||||||||||||| |||| |||  |||||||||    
T  22374531 taattgatatgatagactttaattatattttctattgtagtcaa-cacttatcaccacaaaataacaaagcaataaatgtcttttaatt 22374444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 35574958 - 35575045
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||| ||||||||||||   |||| ||| ||| |||| |||| ||||  |||||||||||||||||| |||  |||||||||    
T  35574958 taattgatatgatagactttaattccattttctattgtagttaa-cacttatcactacaaaataacaaaacaataaatgtcttttaatt 35575045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 32319873 - 32319757
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgata 217  Q
    ||||||||||||||||||||||||||||  ||||||||||||| ||| || |||| |||||||| ||| |||| ||||| ||||||  ||||||||||||    
T  32319873 gatattttgactccaagagtaagtctattaacttactccaaattttgacctttaactctaatatcaattaatggtttagattgattcataataattgata 32319774  T
Q  218 tggtagactttaatttt 234  Q
    || ||||||||||||||    
T  32319773 tgatagactttaatttt 32319757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 39138042 - 39137945
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
    |||||||||||||||||||||||||| |||| ||| | |  | ||||||||||| |||||||||| ||||||||||||  ||||||||| |||||||||    
T  39138042 taattgatatggtagactttaattttattttatattgga-gtcaacactcatcaccacaaaataataaaacaattaatgtcttttaattgattgatttt 39137945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 35352388 - 35352291
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
    ||||||||||||||| |||||||||| |||| ||  |||  | ||||||||||| ||||||||||||||||||| |||  ||||||||| |||||||||    
T  35352388 taattgatatggtaggctttaattttattttctactgta-gtcaacactcatcaccacaaaataacaaaacaataaatgtcttttaattgattgatttt 35352291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 18195319 - 18195406
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||| |||||||||||||  |||| ||| ||| |||| |||| |||| ||||||||||||||||||| |||| |||||||||    
T  18195319 taattgatatgatagactttaatttcattttctattgtagttaa-cacttatcaccacaaaataacaaaacaataaatatcttttaatt 18195406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 286
Target Start/End: Original strand, 32319234 - 32319403
Alignment:
Q  118 gatattttgactccaagagtaagtctatag--acttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattga 215  Q
    |||||||||||||||||| ||||| | |    |||||||||| ||||| ||| |||||||||  ||||   |||| ||||| ||||||| |||||| |||    
T  32319234 gatattttgactccaagaataagtttttgtctacttactccatatcttagcctttaattctataattagctaatggtttagattgattaataataagtga 32319333  T
Q  216 tatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaat 286  Q
    ||  ||| |||||||||||||||| ||| | | || ||||||||||||| ||||||  ||||| |||||||    
T  32319334 tacagtaaactttaattttcttttctattggagtt-aacactcatcatctcaaaatggcaaaataattaat 32319403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 3206472 - 3206537
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  3206472 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 3206537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 5566292 - 5566347
Alignment:
Q  251 aaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgattt 306  Q
    ||||||| ||||||| |||||||||||||||| |||| ||||||||| ||||||||    
T  5566292 aaacacttatcatcagaaaataacaaaacaataaatatcttttaattgattgattt 5566347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 18195236 - 18195302
Alignment:
Q  116 tggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    |||||||||||||||||||||||||| ||    |||||||||||||||| || |||||| |||||||    
T  18195236 tggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattataatatt 18195302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 5389684 - 5389721
Alignment:
Q  124 ttgactccaagagtaagtctatagacttactccaaatc 161  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  5389684 ttgactccaagagtaagtctaaagacttactccaaatc 5389721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 41826771 - 41826824
Alignment:
Q  252 aacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatt 305  Q
    |||||| |||| ||||||||||||||||||| ||| |||||||||| |||||||    
T  41826771 aacacttatcaccacaaaataacaaaacaataaatgacttttaattaattgatt 41826824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 3207276 - 3207189
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||| |||||||||||||  |||| ||| ||| |||| |||| ||||  |||||||||||||||||| |||  |||||||||    
T  3207276 taattgatatgatagactttaatttcattttctattgtagttaa-cacttatcactacaaaataacaaaacaataaatgtcttttaatt 3207189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 307
Target Start/End: Original strand, 10296107 - 10296206
Alignment:
Q  207 aataattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgattt 306  Q
    |||||||||||||||||| ||||||||| |||| ||| |||  | | |||| ||||  |||||||||||||||||| |||  | ||||||| ||||||||    
T  10296107 aataattgatatggtagagtttaattttattttctattgta-atcagcacttatcactacaaaataacaaaacaataaatgtcatttaattgattgattt 10296205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 10296992 - 10296936
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaatt 174  Q
    |||||||||||||||||||||||| ||   ||||||||||||||||| || ||||||    
T  10296992 gatattttgactccaagagtaagtgtaataacttactccaaatcttgacctttaatt 10296936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 14655825 - 14655904
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttag 196  Q
    ||||||||||||||||||||||||| ||   ||||| ||||||| ||| || |||||| ||||||| || ||||| ||||    
T  14655825 ggatattttgactccaagagtaagtgtaataacttattccaaattttgacctttaattttaatattgattaatgacttag 14655904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 146
Target Start/End: Complemental strand, 39322603 - 39322568
Alignment:
Q  111 atatatggatattttgactccaagagtaagtctata 146  Q
    |||||| |||||||||||||||||||||||||||||    
T  39322603 atatattgatattttgactccaagagtaagtctata 39322568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 5390207 - 5390141
Alignment:
Q  124 ttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatg 190  Q
    |||||||| |||||||||||| |||||||||||||||| |  ||||| ||| | |||||||| ||||    
T  5390207 ttgactcctagagtaagtctaaagacttactccaaatcataaccattgattttgatattaattaatg 5390141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 14395136 - 14395194
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattc 175  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || |||||||    
T  14395136 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattc 14395194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 18607688 - 18607591
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
    |||||||||||||||||||||||| | |||| ||| |||  | |||||| |||| |||||||||| |||||||| | |  | ||||||| |||||||||    
T  18607688 taattgatatggtagactttaattctattttctattgta-gtcaacacttatcaccacaaaataagaaaacaataattgtcatttaattgattgatttt 18607591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 9012083 - 9012132
Alignment:
Q  259 atcatcacaaaataacaaaacaattaataacttttaatttattgattttg 308  Q
    |||||||||||||||||||||||| |||  ||||||||  ||||||||||    
T  9012083 atcatcacaaaataacaaaacaataaatgtcttttaatcgattgattttg 9012132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 14396716 - 14396659
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaatt 174  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||    
T  14396716 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaatt 14396659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 40223569 - 40223638
Alignment:
Q  29 atgattggttttgtcatctaaaaatgtctaacagcgcatcttcttatccgtttgtcttctattcatatgt 98  Q
    |||||| |||||| |||| ||||||||||||  ||||| ||| || || |||||||||||||||| ||||    
T  40223569 atgattagttttgccatcaaaaaatgtctaatggcgcagcttattgtctgtttgtcttctattcaaatgt 40223638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 18607769 - 18607713
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaatt 174  Q
    ||||||||||||| |||||||||| ||   ||||||||||||||||| || ||||||    
T  18607769 gatattttgactcaaagagtaagtgtaataacttactccaaatcttgacctttaatt 18607713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 19970556 - 19970600
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatc 161  Q
    ||||||||||||||||||||||| ||| | || ||||||||||||    
T  19970556 ggatattttgactccaagagtaactcttttgagttactccaaatc 19970600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 21022253 - 21022209
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatc 161  Q
    ||||||||||||||||||||||| ||| | || ||||||||||||    
T  21022253 ggatattttgactccaagagtaactcttttgagttactccaaatc 21022209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 41826648 - 41826704
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaatt 174  Q
    |||||||||||||||||||||||| ||    |||||||||||||||| || ||||||    
T  41826648 gatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaatt 41826704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 307
Target Start/End: Complemental strand, 14015027 - 14014873
Alignment:
Q  152 actccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgatatggtagactttaattttcttttttatggtactta 251  Q
    |||||||||| ||||| ||||| |||||||| || |||||||||| ||||||| |||||||||||||||||| ||||| ||| ||| | ||| | |  |     
T  14015027 actccaaatcatggcctttaatcctaatattgattaatgatttagattgattaataataattgatatggtagtctttagtttccttctctattgga-gtc 14014929  T
Q  252 aacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
    ||| | |||||  |||||| ||||||| |||||||| ||||||||| |||||||||    
T  14014928 aacccgcatcactacaaaacaacaaaataattaatatcttttaattaattgatttt 14014873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 55903223 - 55903168
Alignment:
Q  252 aacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  55903223 aacacttatcatcacaaaataacaaaacaataaatatcttttaattgattgatttt 55903168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 5064527 - 5064461
Alignment:
Q  115 atggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatat 181  Q
    |||||||||||||||||||| |||||||| || |||| |||||||||||| || |||||| ||||||    
T  5064527 atggatattttgactccaagcgtaagtctttaaacttcctccaaatcttgtcccttaattttaatat 5064461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 8113433 - 8113336
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
    |||||||||||||||||||||||||| || | ||| | | | || ||||||||| |||||||||| |||||||| |||  ||||||||| |||||||||    
T  8113433 taattgatatggtagactttaattttattctatattggagtcaa-cactcatcaccacaaaataataaaacaatgaatgtcttttaattgattgatttt 8113336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 6946589 - 6946524
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  6946589 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 6946524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 287
Target Start/End: Complemental strand, 22341632 - 22341475
Alignment:
Q  119 atattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgatat 218  Q
    ||||||||||||||||||||||| ||   ||||||||||||| ||| || ||||||  |||||| || ||||| |||| ||          |||| ||||    
T  22341632 atattttgactccaagagtaagtgtaataacttactccaaattttgacctttaattgcaatattgattaatgacttagatt----------aatttatat 22341543  T
Q  219 ggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaata 287  Q
    |||||| ||||||||| |||| ||| ||| | || |||| |||||||||||||||||||||||| ||||    
T  22341542 ggtagattttaattttattttctattgtaatcaa-cacttatcatcacaaaataacaaaacaataaata 22341475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 26043724 - 26043789
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  26043724 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 26043789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 297
Target Start/End: Complemental strand, 23941823 - 23941645
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgat 216  Q
    ||||||||||||||||||| ||||| | |  |||||||||||||||| ||| ||||||  ||| ||| | ||||  |||| ||| |||  ||||| ||||    
T  23941823 ggatattttgactccaagaataagtttgtttacttactccaaatcttagcctttaattg-aattttatttaatggcttagattggttaaaaataagtgat 23941725  T
Q  217 atggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    |   || |||||||||||||| | |||   | |||| ||||||||||| ||||||  ||||||||||||| ||||||||||    
T  23941724 acaataaactttaattttcttctctattagagttaa-cactcatcatcccaaaatggcaaaacaattaatgacttttaatt 23941645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 41185615 - 41185560
Alignment:
Q  126 gactccaagagtaagtctatagacttactccaaatcttggccattaattctaatat 181  Q
    ||||||||||| || |||||||| |||||||||||||||||| |||||| ||||||    
T  41185615 gactccaagagcaaatctatagaattactccaaatcttggcctttaattttaatat 41185560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 22405374 - 22405308
Alignment:
Q  124 ttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatg 190  Q
    |||||| |||||||||||||| | ||||||||||||||||| ||||| ||| ||||| |||| ||||    
T  22405374 ttgacttcaagagtaagtctaaatacttactccaaatcttgaccattcattttaataataattaatg 22405308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 54157295 - 54157333
Alignment:
Q  126 gactccaagagtaagtctatagacttactccaaatcttg 164  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  54157295 gactccaagagtaagtctaaagacttactccaaatcttg 54157333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 1949921 - 1949986
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||| ||||||| ||    |||||||||||||||| || ||||||||||||||    
T  1949921 ggatattttgactccaaaagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 1949986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 1953563 - 1953498
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||  || ||||||||||||||    
T  1953563 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttaacctttaattctaatatt 1953498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 6944737 - 6944794
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaatt 174  Q
    ||||||||||||||||||||||||| ||   ||||||||||||||||| || ||||||    
T  6944737 ggatattttgactccaagagtaagtgtaataacttactccaaatcttgacctttaatt 6944794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 13265512 - 13265577
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || |||||| |||||||    
T  13265512 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattttaatatt 13265577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 26045102 - 26045037
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||| ||||||||| || ||||||||||||||    
T  26045102 ggatattttgactccaagagtaagtgtaatatcttactacaaatcttgacctttaattctaatatt 26045037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 27109770 - 27109843
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatg 190  Q
    |||||| ||||||||||||||||||   || | |||||||||||||| ||| ||||||  ||||||||||||||    
T  27109770 ggatatattgactccaagagtaagtgcttaaagttactccaaatcttagcccttaatttcaatattaatcaatg 27109843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 305
Target Start/End: Original strand, 37002943 - 37003124
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgat 216  Q
    |||||||||||| |||||||||||| ||    ||||||| |||||||| || ||||||| ||| ||  | ||||| |||| || ||||      ||||||    
T  37002943 ggatattttgacaccaagagtaagtataatatcttactctaaatcttgacctttaattccaattttggttaatgacttagattaatta------attgat 37003036  T
Q  217 atggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatt 305  Q
    |||||||  ||||||| | |||| ||| ||| || |||||| |||| |||||||||| |||||||| ||| |||| ||||| |||||||    
T  37003037 atggtaggttttaattctattttctattgtaatt-aacacttatcaccacaaaataataaaacaataaatgacttctaattaattgatt 37003124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 47371055 - 47370958
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattg 214  Q
    ||||||||||||||||||||||||| | |  | ||||| || |||||| || ||||||||||||| ||| ||||  | || ||||||| |||||||||    
T  47371055 ggatattttgactccaagagtaagtttgttaagttacttcacatcttgacctttaattctaatatcaattaatggctaagattgattaataataattg 47370958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 31690249 - 31690154
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatt 305  Q
    ||||||||||||||| ||||||||   |||| ||| |||  | |||||| |||| ||||||||||||||||||| ||| || ||||||| |||||||    
T  31690249 taattgatatggtaggctttaattccattttctattgta-gtcaacacttatcaccacaaaataacaaaacaataaatgacatttaattaattgatt 31690154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 307
Target Start/End: Original strand, 38941175 - 38941274
Alignment:
Q  207 aataattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgattt 306  Q
    ||||||||||||||||| |||||||||| |||| ||| |||  | |||||| ||||  ||||||||||| |||||| |||  | ||||||| ||||||||    
T  38941175 aataattgatatggtaggctttaattttattttctattgta-gtcaacacttatcactacaaaataacataacaataaatgtcatttaattgattgattt 38941273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 161
Target Start/End: Complemental strand, 32527594 - 32527551
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatc 161  Q
    ||||||||||||| |||||||||| | |||||||||||||||||    
T  32527594 gatattttgactctaagagtaagtttgtagacttactccaaatc 32527551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 53993678 - 53993741
Alignment:
Q  127 actccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatg 190  Q
    |||||||||||||||||| ||| ||||||| |||| ||||| |||||| ||||| || ||||||    
T  53993678 actccaagagtaagtctaaagagttactcccaatcatggcctttaattttaataatagtcaatg 53993741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 5045939 - 5045881
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattc 175  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || |||||||    
T  5045939 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattc 5045881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 6945595 - 6945498
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
    |||||||||||||||||||||||| | |||| ||| |||  | |||||| |||| |||||||||| |||||||| | |  | ||||||| |||||||||    
T  6945595 taattgatatggtagactttaattctattttctattgta-gtcaacacttatcaccacaaaataagaaaacaataattgtcatttaattgattgatttt 6945498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 7536718 - 7536764
Alignment:
Q  6 gatccataaatgttatgtttaaaatgattggttttgtcatctaaaaa 52  Q
    ||||||| ||||||||||||| ||||||||||||||| ||| |||||    
T  7536718 gatccatgaatgttatgtttacaatgattggttttgtgatccaaaaa 7536764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 5045815 - 5045762
Alignment:
Q  252 aacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatt 305  Q
    |||||| |||| ||||||||||||||||||| ||| || ||||||| |||||||    
T  5045815 aacacttatcaccacaaaataacaaaacaataaatgacatttaattaattgatt 5045762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 23605025 - 23604940
Alignment:
Q  31 gattggttttgtcatctaaaaatgtctaacagcgcatcttcttatccgtttgtcttctattcatatgttgctaatccttgatatat 116  Q
    ||||| |||||||||| ||||| ||||| | ||||| ||| || |||| ||||||||||||||| |||   ||||| |||||||||    
T  23605025 gattgattttgtcatccaaaaaggtctagcggcgcaacttgttgtccggttgtcttctattcatgtgtaaataatcattgatatat 23604940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 23638373 - 23638406
Alignment:
Q  127 actccaagagtaagtctatagacttactccaaat 160  Q
    |||||||||||||||||| |||||||||||||||    
T  23638373 actccaagagtaagtctaaagacttactccaaat 23638406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 56162244 - 56162309
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    ||||||| ||||||||  | ||||||||||||||    
T  56162244 ggatattttgactccaagagtaagtgtaatatcttactcaaaatcttgatctttaattctaatatt 56162309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 56164215 - 56164150
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||| ||||||||||||||| ||    |||||||||||| ||| || ||||||||||||||    
T  56164215 ggatatttttactccaagagtaagtgtaatatcttactccaaattttgacctttaattctaatatt 56164150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 8683653 - 8683740
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||| |||| |||||||   |||||||| ||| | || |||| |||| ||||||||||||||||||| |||  |||||||||    
T  8683653 taattgatatgatagattttaattccattttttattgtagtcaa-cacttatcaccacaaaataacaaaacaataaatgtcttttaatt 8683740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 15541153 - 15541113
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactcca 157  Q
    ||||||||||||| ||||||||| |||||||| ||||||||    
T  15541153 ggatattttgacttcaagagtaactctatagaattactcca 15541113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 35134484 - 35134456
Alignment:
Q  117 ggatattttgactccaagagtaagtctat 145  Q
    |||||||||||||||||||||||||||||    
T  35134484 ggatattttgactccaagagtaagtctat 35134456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 56162326 - 56162413
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||| ||| |||||||||  |||| ||| ||| | || |||| |||| ||||||||||||||||||| |||  |||||||||    
T  56162326 taattgatatgataggctttaatttaattttctattgtagtcaa-cacttatcaccacaaaataacaaaacaataaatgtcttttaatt 56162413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 56164133 - 56164046
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||| ||||||||||||   |||| ||| ||| |||| |||| ||||  |||||||||||||||||| |||  |||||||||    
T  56164133 taattgatatgatagactttaattccattttctattgtagttaa-cacttatcactacaaaataacaaaacaataaatgtcttttaatt 56164046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 3875 - 3778
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattg 214  Q
    ||||||||||||||||||||||||| | |    |||||||| ||||||||| ||||||||||||| ||| |||| || || ||||||| |||||||||    
T  3875 ggatattttgactccaagagtaagtttgttatgttactccacatcttggcctttaattctaatatcaattaatggttaagattgattaataataattg 3778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 15930 - 15833
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattg 214  Q
    ||||||||||||||||||||||||| | |    |||||||| ||||||||| ||||||||||||| ||| |||| || || ||||||| |||||||||    
T  15930 ggatattttgactccaagagtaagtttgttatgttactccacatcttggcctttaattctaatatcaattaatggttaagattgattaataataattg 15833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 26666918 - 26667015
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattg 214  Q
    ||||||||||||||||||||||||| | |    |||||||| ||||||||| ||||||||||||| ||| |||| || || ||||||| |||||||||    
T  26666918 ggatattttgactccaagagtaagtttgttatgttactccacatcttggcctttaattctaatatcaattaatggttaagattgattaataataattg 26667015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 13703348 - 13703266
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggtt 199  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||  | |||| ||||||||    
T  13703348 ggatattttgactccaagagtaagtgtaacatcttactccaaatcttgacctttaattctaatattggttaatggtttaggtt 13703266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 33707569 - 33707472
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
    ||||| |||||||||||||||||||| || | ||| | | | || ||||||||| |||||||||| ||||||||||||  ||||||||| |||||||||    
T  33707569 taattaatatggtagactttaattttattctatattggagtcaa-cactcatcaccacaaaataataaaacaattaatgtcttttaattgattgatttt 33707472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 3645541 - 3645606
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  3645541 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 3645606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 3646727 - 3646662
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  3646727 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 3646662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 16008233 - 16008298
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  16008233 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 16008298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 25136633 - 25136568
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  25136633 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 25136568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 2480053 - 2479980
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatg 190  Q
    |||||| ||||||||||||||||||   || | |||||||||||||| ||| ||||||  ||||||||||||||    
T  2480053 ggatatattgactccaagagtaagtgcttaaagttactccaaatcttagcccttaatttcaatattaatcaatg 2479980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 25133285 - 25133350
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| |  ||||||||||||||    
T  25133285 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacatttaattctaatatt 25133350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 7190958 - 7191014
Alignment:
Q  252 aacactcatcatcacaaaataacaaaacaattaataacttttaatttattgattttg 308  Q
    |||||| ||||||||||||||| |||||||| |||  ||||||||| ||||||||||    
T  7190958 aacacttatcatcacaaaataagaaaacaataaatgtcttttaattgattgattttg 7191014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 13220738 - 13220682
Alignment:
Q  252 aacactcatcatcacaaaataacaaaacaattaataacttttaatttattgattttg 308  Q
    |||||| ||||||||||||||| |||||||| |||  ||||||||| ||||||||||    
T  13220738 aacacttatcatcacaaaataagaaaacaataaatgtcttttaattgattgattttg 13220682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 237
Target Start/End: Original strand, 35073487 - 35073607
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgat 216  Q
    ||||||||||||||||||||||| | | |  |||||||||||||||| | | |||||| || | | ||| |||| ||||| ||||||| |||||| |  |    
T  35073487 ggatattttgactccaagagtaaatttgttcacttactccaaatcttagtctttaattgtattttcaattaatggtttagattgattaataataagttgt 35073586  T
Q  217 atggtagactttaattttctt 237  Q
    ||||||| || ||| ||||||    
T  35073587 atggtaggctataaatttctt 35073607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 7191696 - 7191617
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatattaatcaatgatttag 196  Q
    ||||||||||||||||||||||||| ||   ||||||| ||||||||| |  ||||||| ||| ||||| ||||| ||||    
T  7191696 ggatattttgactccaagagtaagtttaataacttacttcaaatcttgacatttaattccaattttaattaatgacttag 7191617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 11324763 - 11324818
Alignment:
Q  124 ttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaat 179  Q
    ||||||||||||||||||||| | |||||||||||||| || ||||| ||| ||||    
T  11324763 ttgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaat 11324818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 13220893 - 13220948
Alignment:
Q  124 ttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaat 179  Q
    ||||||||||||||||||||| | |||||||||||||| || ||||| ||| ||||    
T  13220893 ttgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaat 13220948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 13225262 - 13225207
Alignment:
Q  124 ttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaat 179  Q
    ||||||||||||||||||||| | |||||||||||||| || ||||| ||| ||||    
T  13225262 ttgactccaagagtaagtctaaacacttactccaaatcatgaccattcattttaat 13225207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 13220044 - 13220102
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattc 175  Q
    ||||||||||||||||||||||||| ||   ||||||||||||| ||| || |||||||    
T  13220044 ggatattttgactccaagagtaagtgtaataacttactccaaattttgacctttaattc 13220102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 17551108 - 17551194
Alignment:
Q  151 tactccaaatcttggccattaattctaatattaatcaatgatttaggttgattattaataattgatatggtagactttaattttctt 237  Q
    ||||||||||||||||   ||||| || ||| ||| || | ||||| ||||||| |||||| || ||||||||||| ||||||||||    
T  17551108 tactccaaatcttggcttctaattgtattatcaattaaaggtttagattgattaataataaatggtatggtagactataattttctt 17551194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 13701708 - 13701773
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||| ||| || |||||| |||||||    
T  13701708 ggatattttgactccaagagtaagtgtaatatcttactccaaattttgacctttaattttaatatt 13701773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 16008315 - 16008402
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||| ||||||||||||   |||| ||| ||| |||| |||| ||||  |||||||||||||||||| |||  |||||||||    
T  16008315 taattgatatgatagactttaattccattttctattgtagttaa-cacttatcactacaaaataacaaaacaataaatgtcttttaatt 16008402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 21777897 - 21777857
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactcca 157  Q
    ||||||||||||||||||||||| |||| ||| ||||||||    
T  21777897 ggatattttgactccaagagtaactctaaagagttactcca 21777857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 25344850 - 25344890
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactcca 157  Q
    |||||| ||||||||||||||||||||| ||| ||||||||    
T  25344850 ggatatattgactccaagagtaagtctaaagagttactcca 25344890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 29414582 - 29414542
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactcca 157  Q
    ||||||||||||||||||||||| |||| ||| ||||||||    
T  29414582 ggatattttgactccaagagtaactctaaagagttactcca 29414542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 1492 - 1397
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatt 305  Q
    ||||||||||||||||||||||||   |||| ||| |||  | |||||| |||| ||||||||||||||||||| ||| |||||||||| |||||||    
T  1492 taattgatatggtagactttaattccattttctattgta-gtcaacacttatcaccacaaaataacaaaacaataaatgacttttaattaattgatt 1397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 294
Target Start/End: Original strand, 20343208 - 20343314
Alignment:
Q  187 aatgatttaggttgattattaataattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaat 286  Q
    ||||| |||| ||||||| ||| |||||||||||||| ||||||||||||| | | | | |  | |||| |||||| |||||||||||||||||||||||    
T  20343208 aatgacttagattgattaataaaaattgatatggtaggctttaattttcttctctgttgga-gtcaacattcatcaccacaaaataacaaaacaattaat 20343306  T
Q  287 aactttta 294  Q
     |||||||    
T  20343307 gactttta 20343314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 307
Target Start/End: Original strand, 36670273 - 36670370
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
    |||||||||||||||||||||||||| |||| ||| |||  | |||||| ||||  |||||||||||||||||| |||  | ||||||| |||||||||    
T  36670273 taattgatatggtagactttaattttattttctattgta-gtgaacacttatcactacaaaataacaaaacaataaatgtcatttaattgattgatttt 36670370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 19386862 - 19386797
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  19386862 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 19386797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 39832294 - 39832229
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  39832294 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 39832229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 32021201 - 32021137
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    |||||||||||||||||||||||| ||    |||||||||||||||| || ||||||||||||||    
T  32021201 gatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattctaatatt 32021137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 39830952 - 39831017
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    ||||||||||||||||||||||||| ||    |||||||||||| ||| || ||||||||||||||    
T  39830952 ggatattttgactccaagagtaagtgtaatatcttactccaaattttgacctttaattctaatatt 39831017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 2396118 - 2396182
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattctaatatt 182  Q
    |||||||||||||||||||||||| ||    |||||||||||||||| |  ||||||||||||||    
T  2396118 gatattttgactccaagagtaagtgtaatatcttactccaaatcttgacttttaattctaatatt 2396182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 2396199 - 2396286
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||| ||||||||||||   |||| ||| ||| |||| |||| ||||  |||||||||||||||||| |||| |||||||||    
T  2396199 taattgatatgatagactttaattccattttctattgtagttaa-cacttatcactacaaaataacaaaacaataaatatcttttaatt 2396286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 36671126 - 36671079
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttg 164  Q
    ||||||||||||||||||||||||| ||   |||||||||||||||||    
T  36671126 ggatattttgactccaagagtaagtgtaataacttactccaaatcttg 36671079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 11511046 - 11511104
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattc 175  Q
    ||||||||||||||||||||||||| ||    |||||||||||||||| || |||||||    
T  11511046 ggatattttgactccaagagtaagtgtaatatcttactccaaatcttgacctttaattc 11511104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 11511170 - 11511223
Alignment:
Q  252 aacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatt 305  Q
    |||||| |||| ||||||||||||||||||| ||| || ||||||| |||||||    
T  11511170 aacacttatcaccacaaaataacaaaacaataaatgacatttaattaattgatt 11511223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 27168503 - 27168560
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaatt 174  Q
    ||||||||||||||||||||||||| ||   ||||||||| ||||||| || ||||||    
T  27168503 ggatattttgactccaagagtaagtgtaataacttactcctaatcttgacctttaatt 27168560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4501224 - 4501132
Alignment:
Q  1 tccttgatccataaatgttatgtttaaaatgattggttttgtcatctaaaaatgtctaacagcgcatcttcttatccgtttgtcttctattca 93  Q
    |||| ||| ||| |||||| ||||||  | |||| | ||||||||||||||| ||||| ||||||||||| || |||| ||| ||| ||||||    
T  4501224 tcctagattcatgaatgttgtgtttacgaggattagctttgtcatctaaaaaggtctagcagcgcatcttattgtccgcttgccttatattca 4501132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 5714998 - 5714954
Alignment:
Q  8 tccataaatgttatgtttaaaatgattggttttgtcatctaaaaa 52  Q
    |||||||||||| ||||||  | ||||||||||||||||||||||    
T  5714998 tccataaatgttgtgtttatgaagattggttttgtcatctaaaaa 5714954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 20009132 - 20009092
Alignment:
Q  117 ggatattttgactccaagagtaagtctatagacttactcca 157  Q
    |||||| ||||||||||||||||||||| ||| ||||||||    
T  20009132 ggatatattgactccaagagtaagtctaaagagttactcca 20009092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 32020283 - 32020227
Alignment:
Q  118 gatattttgactccaagagtaagtctatagacttactccaaatcttggccattaatt 174  Q
    |||||||||||||||||||||||| ||   |||||||||||||| || || ||||||    
T  32020283 gatattttgactccaagagtaagtgtaataacttactccaaatcctgacctttaatt 32020227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 39831034 - 39831121
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatt 297  Q
    ||||||||||| ||||||||||||   |||| ||| ||| |||| |||| ||||  |||||||||||||||||| |||  |||||||||    
T  39831034 taattgatatgatagactttaattccattttctattgtagttaa-cacttatcactacaaaataacaaaacaataaatgtcttttaatt 39831121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 256964 - 257018
Alignment:
Q  252 aacactcatcatcacaaaataacaaaacaattaataacttttaatttattgattt 306  Q
    |||||| |||||||||||||||||||||||| |||| ||||||||| ||||||||    
T  256964 aacacttatcatcacaaaataacaaaacaatgaatatcttttaattgattgattt 257018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 63653 - 63556
Alignment:
Q  209 taattgatatggtagactttaattttcttttttatggtacttaaacactcatcatcacaaaataacaaaacaattaataacttttaatttattgatttt 307  Q
    |||||||||||||||  ||||||||| || | ||| ||| | || |||| |||| ||||||||||||||| ||| |||  ||||||||| |||||||||    
T  63653 taattgatatggtaggttttaattttattctctattgtaatcaa-cacttatcaccacaaaataacaaaagaataaatgtcttttaattgattgatttt 63556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 47670 - 47754
Alignment:
Q  9 ccataaatgttatgtttaaaatgattggttttgtcatctaaaaatgtctaacagcgcatcttcttatccgtttgtcttctattca 93  Q
    |||| ||||||||||||| || ||||| ||||  |||| |||||||| || | || || ||| || |||||||||||||||||||    
T  47670 ccatgaatgttatgtttacaaagattgattttaccatcgaaaaatgtttagcggcacaacttgttgtccgtttgtcttctattca 47754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University