View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20763_high_7 (Length: 389)
Name: NF20763_high_7
Description: NF20763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20763_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 384
Target Start/End: Complemental strand, 2123022 - 2122649
Alignment:
| Q |
16 |
tcaattttcttttaacagacaaaagaaatgaagggatgatttggttgtgagcattagcaaagaactcgaaagaagtgtcaaagcnnnnnnnnnnnnnnnn |
115 |
Q |
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| T |
2123022 |
tcaattttcttttaacagaaaaaagaaatgaagggatgatttggttgtgagcattagcaaagaactcgaaagaagtgtcaaagcaaaaataaaaaataaa |
2122923 |
T |
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| Q |
116 |
nnctattttaggacatcggtgtgagtatcagacaccgatgtgtgccggacactgcgacacggctaatgctagagatgtccctgcctcattggttgtaaat |
215 |
Q |
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| T |
2122922 |
aactattttaggacatcggtatgagtatcagacaccgatgtgtgctggacaccgcgacacggctaatgctagagatgtccctgcctcattggttgtaaat |
2122823 |
T |
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| Q |
216 |
tagttgtaattcagatttgagttacaa---atgagtgtcatagagtcctataaatatgaaactcaagtacgtcgatttaccattcttttcatttaataca |
312 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2122822 |
tagttgtaattcagatttgagttacaaatgatgagtgtcatagagtcctataaatatgaaactcaagtacgtcgatttaccattcttttcatttaataca |
2122723 |
T |
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| Q |
313 |
caaagttacctcatgtgcatcaataaggtctaca--tctctcctatggttatgactttcctgtcctatgcttct |
384 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
2122722 |
caaagttacttcatgtgcatcaataaggtctacatctctctcctatggttatgactttcctgtcctatgtttct |
2122649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 2095033 - 2094964
Alignment:
| Q |
16 |
tcaattttcttttaacagacaaaagaaatgaagggatgat----ttggttgtgagcattagcaaagaact |
81 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2095033 |
tcaattttctttcaacagacaaaagaaatgaagggatgatgatcttggttgtgagcattagcaaagaact |
2094964 |
T |
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