View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20763_low_1 (Length: 556)
Name: NF20763_low_1
Description: NF20763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20763_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 14 - 536
Target Start/End: Original strand, 34016061 - 34016571
Alignment:
| Q |
14 |
tactcacctggttggagaacttgggctgctgtggcaattcaattggcttggagaaggtataggcataggttgactttgagttctttgtcctttattaggc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34016061 |
tactcacctggttggagaacttgggctgctgtggcaattcaattggcttggagaaggtataggcataggttgactttgagttctttgtcctttattaggc |
34016160 |
T |
|
| Q |
114 |
ctcgtaggcctttgtcaaggtctacttctttggaagaggatagacttcgtctctatacagctttgctaacctcgccaaagcctaatcaggatggttttga |
213 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34016161 |
ctcgtaggcctttgtcaaggtctacttctttagaagaggatagacttcgtctctatacagctttgctaacctcgccaaagcctaatcaggatggttttga |
34016260 |
T |
|
| Q |
214 |
ctcttcataacattgtgtttgtggaaaatgaattgatgtagttatgtatgctgtttagtatgtagagttttatttactttttggattaattacaatttta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34016261 |
ctcttcataacattgtgtttgtggaaaatgaattgatgtagttatgtatgctgtttagtatgtagagttttatttactttttggattaattacaatttta |
34016360 |
T |
|
| Q |
314 |
atctttattgttggctatgtgcgattttgtcttacaataannnnnnnaattgatcatcaaattgatcattagtatccacattgttagtattggatagacc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| ||| ||| ||||||| |||||||||| |
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| T |
34016361 |
atctttattgttggctatgtgcgattttgtcttacaataat------------ttttttaattgatcattagtctccgcatagttagtaatggatagacc |
34016448 |
T |
|
| Q |
414 |
taaattagaaagcttatctgcgcagtgatttccctctctatatatgtgacttatcatgaaatgcatagaactcagcttaaccatacagttctgccaccta |
513 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34016449 |
taaattagaaagattatctgcgcagtgatttccttctctatatatgtgacttatcatgaaatgcatagaactcagcttaaccatacagttctgccaccta |
34016548 |
T |
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| Q |
514 |
ttcttaagctcctacggaacaat |
536 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
34016549 |
ttcttaagctcctacggaacaat |
34016571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 22852110 - 22852311
Alignment:
| Q |
14 |
tactcacctggttggagaacttgggctgctgtggcaattcaattggcttggagaaggtataggcataggttgactttgagttctttgtcctttattaggc |
113 |
Q |
| |
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|||||||| || ||||||||||||| ||||||||| || |||||||| ||||||||||| || |||||||| ||||||| || ||||| ||||| || | |
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| T |
22852110 |
tactcaccagggtggagaacttggggtgctgtggccatacaattggcatggagaaggtacagacataggttaactttgaactcattgtcgtttataagac |
22852209 |
T |
|
| Q |
114 |
ctcgtaggcctttgtcaaggtctacttctttggaagaggatagacttcgtctctatacagctttgctaacctcgccaaagcctaatcaggatggttttga |
213 |
Q |
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|| | || || |||||||| | | |||| |||| ||| ||||||||||| ||||| ||||||||| |||| || |||||||||||||| |||| ||| || |
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| T |
22852210 |
ctagaagacccttgtcaagatgttcttcattgggagaagatagacttcgactctacacagctttgttaacttcaccaaagcctaatcaagatgatttcga |
22852309 |
T |
|
| Q |
214 |
ct |
215 |
Q |
| |
|
|| |
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|
| T |
22852310 |
ct |
22852311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 523
Target Start/End: Complemental strand, 19955418 - 19955320
Alignment:
| Q |
425 |
gcttatctgcgcagtgatttccctctctatatatgtgacttatcatgaaatgcatagaactcagcttaaccatacagttctgccacctattcttaagct |
523 |
Q |
| |
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|||||| ||| || |||||||| ||| ||| ||| ||| ||||||||||||| ||||| |||||||| | |||||||||| ||| ||||||| |||| |
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| T |
19955418 |
gcttatttgcacaatgatttccttctttatgtatatgagatatcatgaaatgcgtagaattcagcttatcaatacagttcttccatatattcttgagct |
19955320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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