View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20763_low_17 (Length: 250)

Name: NF20763_low_17
Description: NF20763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20763_low_17
NF20763_low_17
[»] chr4 (5 HSPs)
chr4 (1-240)||(51211479-51211718)
chr4 (75-233)||(51197960-51198118)
chr4 (75-234)||(51155444-51155603)
chr4 (80-234)||(51144304-51144458)
chr4 (75-234)||(29938480-29938639)
[»] chr3 (2 HSPs)
chr3 (45-234)||(49738494-49738689)
chr3 (81-206)||(36284720-36284848)
[»] chr1 (2 HSPs)
chr1 (77-230)||(38527178-38527331)
chr1 (76-230)||(38568478-38568632)
[»] chr2 (2 HSPs)
chr2 (83-149)||(5821153-5821219)
chr2 (80-136)||(5764242-5764298)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 51211718 - 51211479
Alignment:
Q  1 tatccaccaaaaaaggaagaatgagttattattatcttcgaattttgttatcatggttagatcaaatgatgctgcattcataccttgtctcccatggctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51211718 tatccaccaaaaaaggaagaatgagttattattatcttcgaattttgttatcatggttagatcaaatgatgctgcattcataccttgtctcccatggctt 51211619  T
Q  101 cttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactgatatcttgccttaaaattgctttgag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51211618 cttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactgatatcttgccttaaaattgctttgag 51211519  T
Q  201 gtataatgcccttattcttgcagcctgtctctcctctgtg 240  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  51211518 gtataatgcccttattcttgcagcctgtctctcccctgtg 51211479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 75 - 233
Target Start/End: Complemental strand, 51198118 - 51197960
Alignment:
Q  75 cattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactg 174  Q
    |||| ||||||| || |||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||| |||| |||||||| |||||||||||     
T  51198118 cattaataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttccaacaacctctccagtattagtttccttatcaaagaaactc 51198019  T
Q  175 atatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctc 233  Q
    | ||||||||| ||||||| || |||||||||    || ||||||||||||||||||||    
T  51198018 acatcttgcctcaaaattgtttggaggtataagcttctgattcttgcagcctgtctctc 51197960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 75 - 234
Target Start/End: Complemental strand, 51155603 - 51155444
Alignment:
Q  75 cattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactg 174  Q
    |||| ||||||| || |||||||| |||| ||| |||| ||||||||||||||| |||||||||||||| ||| |||| |||||||| |||||||| ||     
T  51155603 cattgataccttctcccccatggcatctttaattagaaatgtatcacctgacatccttccaacaacctctccagtattagtttccttatcaaagaagctc 51155504  T
Q  175 atatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcc 234  Q
    | ||||||||| ||||||| ||| ||||||||  | || |||||||||  ||||||||||    
T  51155503 acatcttgcctcaaaattgttttaaggtataaccctctaattcttgcactctgtctctcc 51155444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 51144458 - 51144304
Alignment:
Q  80 ataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactgatatc 179  Q
    ||||||| || |||||||| || | ||||||||| ||||||||||||||||||||||||||||| ||  |||| |||||||| ||||||||||| | |||    
T  51144458 ataccttctcacccatggcatccttaataagaacagtatcacctgacattcttccaacaacctctcccgtattagtttccttatcaaagaaactcacatc 51144359  T
Q  180 ttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcc 234  Q
    |||||| ||||||| ||| || |||||  | || |||||||||  ||||||||||    
T  51144358 ttgcctcaaaattgttttaagatataaccctctaattcttgcactctgtctctcc 51144304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 234
Target Start/End: Original strand, 29938480 - 29938639
Alignment:
Q  75 cattcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactg 174  Q
    |||| ||||||| || |||||||| |||| ||||||||| || ||||||| ||| |||||||||||||| ||| | || ||||| || ||||| || ||     
T  29938480 cattgataccttctcccccatggcatctttaataagaacagtgtcacctgccatccttccaacaacctctccagtgttagtttctttatcaaaaaagctc 29938579  T
Q  175 atatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcc 234  Q
    | ||||||||| ||||||| ||| ||||||||  | || |||||||||  ||||||||||    
T  29938580 acatcttgcctcaaaattgttttaaggtataagcctctaattcttgcactctgtctctcc 29938639  T

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Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 45 - 234
Target Start/End: Original strand, 49738494 - 49738689
Alignment:
Q  45 ttgttatcatggttagatcaaatgatgctgcattcata------ccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaaca 138  Q
    |||||||||| |||||||||||||||  |||||| |||      |||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  49738494 ttgttatcatagttagatcaaatgattatgcattaatagaaataccttctctcccatggcatcttgaataagaactgtgtcacctgatattcttccaaca 49738593  T
Q  139 acctcaccactatttgtttccttgtcaaagaaactgatatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtctctcc 234  Q
    |||||| |||| ||||||||| |||||||||| || |||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||    
T  49738594 acctcaacactgtttgtttccctgtcaaagaagcttatatcttgccttaaaattgctttgaggtataaggcccgtattcttgcagcttgtctctcc 49738689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 206
Target Start/End: Complemental strand, 36284848 - 36284720
Alignment:
Q  81 taccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgt---ttccttgtcaaagaaactgata 177  Q
    |||||| || ||||| || ||||||||||||| ||| |||| |||||| |||||||||||||| ||| |||| ||   |||| |||||||||| ||  ||    
T  36284848 taccttctcacccattgcatcttgaataagaattgtgtcacttgacatccttccaacaacctcgccagtattagtttcttccatgtcaaagaagctcgta 36284749  T
Q  178 tcttgccttaaaattgctttgaggtataa 206  Q
    |||||||| ||||||||| ||||||||||    
T  36284748 tcttgcctcaaaattgctctgaggtataa 36284720  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 38527178 - 38527331
Alignment:
Q  77 ttcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactgat 176  Q
    |||||||||| || |||||||| |||||||||||||| |||||||| ||||||||||| ||||| || ||  | |||||||| || ||||||||| | |     
T  38527178 ttcataccttctcacccatggcatcttgaataagaacagtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaac 38527277  T
Q  177 atcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtct 230  Q
    |||||| ||||| |||| ||| |  || ||| | |||||||||||||| |||||    
T  38527278 atcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtct 38527331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 230
Target Start/End: Original strand, 38568478 - 38568632
Alignment:
Q  76 attcataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccactatttgtttccttgtcaaagaaactga 175  Q
    ||||||||||| || |||||||| |||||||||||||| ||||||||||||||||| || | ||| || ||  | |||||||| || ||||||||| | |    
T  38568478 attcataccttctcacccatggcatcttgaataagaacagtatcacctgacattctccctataacttctcctgtgtttgtttctttatcaaagaaagtaa 38568577  T
Q  176 tatcttgccttaaaattgctttgaggtataatgcccttattcttgcagcctgtct 230  Q
     |||||| ||||| |||| ||| |  || ||| | |||||||||||||| |||||    
T  38568578 catcttgtcttaatattgttttcaaatacaatcctcttattcttgcagcttgtct 38568632  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 5821219 - 5821153
Alignment:
Q  83 ccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaacaacctcaccact 149  Q
    |||| ||||||||||| |||||||| ||||  |||||||| ||||||||||||| |||||| |||||    
T  5821219 ccttttctcccatggcatcttgaatgagaatggtatcaccagacattcttccaataacctctccact 5821153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 5764298 - 5764242
Alignment:
Q  80 ataccttgtctcccatggcttcttgaataagaactgtatcacctgacattcttccaa 136  Q
    ||||||| ||||||||||| |||||||| |||| ||| ||||| |||||||| ||||    
T  5764298 ataccttttctcccatggcatcttgaatgagaattgtgtcaccagacattctaccaa 5764242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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